Stefan Coassin
@stncsn.bsky.social
Molecular biology, nanopore sequencing and a pinch of bioinformatics. Genomics enthusiast. Lipoprotein(a) genetics and other strange DNA stuff. Assoc Prof at Med Univ Innsbruck, Austria.
https://genepi.i-med.ac.at/team/coassin-stefan/
https://genepi.i-med.ac.at/team/coassin-stefan/
Reposted by Stefan Coassin
Reposted by Stefan Coassin
Find all Springer Nature journal and imprint accounts on Bluesky ⬇️.
January 29, 2025 at 10:43 AM
Find all Springer Nature journal and imprint accounts on Bluesky ⬇️.
Reposted by Stefan Coassin
Wir müssen einfach für mehr Bildung sorgen, dachte ich lange. Wir müssen erklären, wie man wissenschaftlich denkt und logische Schlüsse zieht, dann wird alles gut.
Das war falsch. Was wir brauchen ist ein Grundkonsens über anständiges Verhalten. Ohne diese Basis ist jedes Wissen umsonst.
Das war falsch. Was wir brauchen ist ein Grundkonsens über anständiges Verhalten. Ohne diese Basis ist jedes Wissen umsonst.
Ohne Anstand keine Fakten
Wissenschaftliche Fakten sind wichtig in einer Zeit der Fake News. Aber sie alleine bringen überhaupt nichts.
futurezone.at
February 1, 2025 at 3:21 PM
Wir müssen einfach für mehr Bildung sorgen, dachte ich lange. Wir müssen erklären, wie man wissenschaftlich denkt und logische Schlüsse zieht, dann wird alles gut.
Das war falsch. Was wir brauchen ist ein Grundkonsens über anständiges Verhalten. Ohne diese Basis ist jedes Wissen umsonst.
Das war falsch. Was wir brauchen ist ein Grundkonsens über anständiges Verhalten. Ohne diese Basis ist jedes Wissen umsonst.
Reposted by Stefan Coassin
The #deepseekr1 memes will continue until morale improves
January 29, 2025 at 4:11 PM
The #deepseekr1 memes will continue until morale improves
Reposted by Stefan Coassin
Did I get it right? Open Source wiped half a trillion $ of perceived value in #AI stocks in one swift move? Wow.
So, is the battle over? Did open-source DeepSeek AI/LLM win the race? DeepSeek: Chinese AI chatbot sparks market turmoil for rivals such as Nvidia, Microsoft, Meta, and others
January 27, 2025 at 4:50 PM
Did I get it right? Open Source wiped half a trillion $ of perceived value in #AI stocks in one swift move? Wow.
Happy to see that @stephanamstler.bsky.social is today's headliner on the university website with our paper about applying UMI- #nanopore sequencing to the complex #lipoprotein(a) KIV-2 #VNTR. Congrats! Paper at doi.org/n292
Die neue Methode UMI-Nanopore-Sequencing erlaubt es, einen komplexen Abschnitt des Lipoprotein(a)-Gens (Atherosklerose-Risikofaktor) präzise zu entschlüsseln und unbekannte Mutationsmuster und deren Wiederholungen zu zählen. Team um Stephan Amstler und Stefan Coassin: www.i-med.ac.at/mypoint/news...
January 20, 2025 at 11:33 AM
Happy to see that @stephanamstler.bsky.social is today's headliner on the university website with our paper about applying UMI- #nanopore sequencing to the complex #lipoprotein(a) KIV-2 #VNTR. Congrats! Paper at doi.org/n292
Reposted by Stefan Coassin
Abonniere den Kanal Med Uni Innsbruck auf WhatsApp: whatsapp.com/channel/0029...
Med Uni Innsbruck | WhatsApp Channel
Med Uni Innsbruck WhatsApp Channel. Wissen|schaf(f)t Gesundheit: News, Tipps und Events der Med Uni Innsbruck für alle Interessierten. 144 followers
whatsapp.com
January 16, 2025 at 2:36 PM
Abonniere den Kanal Med Uni Innsbruck auf WhatsApp: whatsapp.com/channel/0029...
Reposted by Stefan Coassin
Are you working with one of the genotype imputation servers? Then this is your chance to see new features pretty soon on the server: @lukfor.bsky.social ky.social, @silvidm.bsky.social, and I are hosting our 2nd Nextflow in Genomics Hackathon to boost imputation servers here @i-med.ac.at
1/2
Nextflow In Genomics 2025 - Genepi Innsbruck
Institute of Genetic Epidemiology, Medical University of Innsbruck
genepi.i-med.ac.at
January 16, 2025 at 6:17 PM
Are you working with one of the genotype imputation servers? Then this is your chance to see new features pretty soon on the server: @lukfor.bsky.social ky.social, @silvidm.bsky.social, and I are hosting our 2nd Nextflow in Genomics Hackathon to boost imputation servers here @i-med.ac.at
1/2
Reposted by Stefan Coassin
Regulation of protein abundance in normal human tissues www.medrxiv.org/content/10.1...
GTEx's proteomics analysis finally out. 700 samples across 5 tissues, nearly 2000 cis-pQTLs, protein-protein correlations and comparison to RNA/eQTL.
GTEx's proteomics analysis finally out. 700 samples across 5 tissues, nearly 2000 cis-pQTLs, protein-protein correlations and comparison to RNA/eQTL.
January 15, 2025 at 5:30 PM
Regulation of protein abundance in normal human tissues www.medrxiv.org/content/10.1...
GTEx's proteomics analysis finally out. 700 samples across 5 tissues, nearly 2000 cis-pQTLs, protein-protein correlations and comparison to RNA/eQTL.
GTEx's proteomics analysis finally out. 700 samples across 5 tissues, nearly 2000 cis-pQTLs, protein-protein correlations and comparison to RNA/eQTL.
Reposted by Stefan Coassin
Massively parallel reporter assays (MPRAs) testing >680,000 sequences combined with machine learning to improve regulatory element & variant effect prediction. Amazing work by @vagar.bsky.social, Fumitaka Inoue, @jshendure.bsky.social and many others as part of ENCODE.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Massively parallel characterization of transcriptional regulatory elements - Nature
Lentivirus-based reporter assays for 680,000 regulatory sequences from three cell lines coupled to machine-learning models lead to insights into the grammar of cis-regulatory elements.
www.nature.com
January 15, 2025 at 5:05 PM
Massively parallel reporter assays (MPRAs) testing >680,000 sequences combined with machine learning to improve regulatory element & variant effect prediction. Amazing work by @vagar.bsky.social, Fumitaka Inoue, @jshendure.bsky.social and many others as part of ENCODE.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Stefan Coassin
Truveta has built a database of 120M de-identified EHRs for digital phenotyping—and now they're teaming up with Regeneron and Illumina to sequence 10M patients across 30 US health systems.
🧬 Major move for precision medicine!
www.geekwire.com/2025/seattle...
🧬 Major move for precision medicine!
www.geekwire.com/2025/seattle...
Seattle’s newest unicorn: Truveta lands $320M to fuel creation of massive new genome project
The Truveta team at its Bellevue, Wash., headquarters last year. (Truveta Photo) Seattle-area health data company Truveta announced $320 million in
www.geekwire.com
January 14, 2025 at 5:24 PM
Truveta has built a database of 120M de-identified EHRs for digital phenotyping—and now they're teaming up with Regeneron and Illumina to sequence 10M patients across 30 US health systems.
🧬 Major move for precision medicine!
www.geekwire.com/2025/seattle...
🧬 Major move for precision medicine!
www.geekwire.com/2025/seattle...
Reposted by Stefan Coassin
"How much do YOU think this advanced operating environment is worth? WAIT! Just one minute before you answer!" It's not hard to see how Steve Ballmer sold software in the 80s.
Windows 1.0 with Steve Ballmer (1986) (HQ, 60FPS)
Blue OS Museum (YouTube)
www.youtube.com
January 12, 2025 at 12:05 AM
"How much do YOU think this advanced operating environment is worth? WAIT! Just one minute before you answer!" It's not hard to see how Steve Ballmer sold software in the 80s.
Reposted by Stefan Coassin
40 years ago all of Genbank was published in print form by NAR. The same format today would require over 4 light seconds of shelf space. To a year of progress in 2025.
December 29, 2024 at 9:50 AM
40 years ago all of Genbank was published in print form by NAR. The same format today would require over 4 light seconds of shelf space. To a year of progress in 2025.
Reposted by Stefan Coassin
Honored to receive the Wael Almahmeed & IAS Research Training Fellowship! Grateful for this opportunity and excited to start my project: “Decoding #PCSK9: New Perspectives on the Mature and Furin-Cleaved Forms” in 2025. Thank you for the support! #CardioSky #MedSky #Atherosclerosis
December 31, 2024 at 10:59 AM
Honored to receive the Wael Almahmeed & IAS Research Training Fellowship! Grateful for this opportunity and excited to start my project: “Decoding #PCSK9: New Perspectives on the Mature and Furin-Cleaved Forms” in 2025. Thank you for the support! #CardioSky #MedSky #Atherosclerosis
Reposted by Stefan Coassin
Organelles meets dinos! 🦖🔬 Featuring Mitosaur, ERsaur, Golgisaur, Lysosaur, and others, it's such a creative take on the cellular world we know and love. 💚
Which dino-organelle is your favorite? Let us know below! 👇
Which dino-organelle is your favorite? Let us know below! 👇
December 28, 2024 at 7:10 PM
Organelles meets dinos! 🦖🔬 Featuring Mitosaur, ERsaur, Golgisaur, Lysosaur, and others, it's such a creative take on the cellular world we know and love. 💚
Which dino-organelle is your favorite? Let us know below! 👇
Which dino-organelle is your favorite? Let us know below! 👇
Reposted by Stefan Coassin
When groups meet to brainstorm, good ideas are lost. People bite their tongues due to conformity pressure, noise, and ego threat.
A better approach is brainwriting: generate ideas separately, then meet to assess and refine.
Group wisdom begins with individual creativity.
A better approach is brainwriting: generate ideas separately, then meet to assess and refine.
Group wisdom begins with individual creativity.
December 16, 2024 at 1:07 PM
When groups meet to brainstorm, good ideas are lost. People bite their tongues due to conformity pressure, noise, and ego threat.
A better approach is brainwriting: generate ideas separately, then meet to assess and refine.
Group wisdom begins with individual creativity.
A better approach is brainwriting: generate ideas separately, then meet to assess and refine.
Group wisdom begins with individual creativity.
Reposted by Stefan Coassin
Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social
🆕 10 new modules supporting new tools in this release:
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
- MosaiCatcher
- ataqv
- telseq
- Cell
- GTDB
- Checkm
- Checkm2
- Haplocheck
- mgikit
- Percolator
December 22, 2024 at 11:29 AM
Super cool! MultiQC now supports Haplocheck! 🚀 @sebschoenherr.bsky.social @whansi.bsky.social
Reposted by Stefan Coassin
In #AtheroTalk 🎙️, we uncover unique insights from leading scientists you won’t hear in typical scientific talks. As we’re new to podcasting, we’d love your feedback to help us improve. Don’t miss these exciting conversations!🫀 #cardiosky #MedSky #science #podcast
open.spotify.com/show/2zYZmr7...
open.spotify.com/show/2zYZmr7...
December 19, 2024 at 8:00 PM
In #AtheroTalk 🎙️, we uncover unique insights from leading scientists you won’t hear in typical scientific talks. As we’re new to podcasting, we’d love your feedback to help us improve. Don’t miss these exciting conversations!🫀 #cardiosky #MedSky #science #podcast
open.spotify.com/show/2zYZmr7...
open.spotify.com/show/2zYZmr7...
Reposted by Stefan Coassin
This summer, @lukfor.bsky.social and I migrated the Michigan Imputation Server to Nextflow. 2M genomes later, we can say it was a big success.
As a Christmas gift, we’re excited to show you how to set up your own local server in under 10 minutes.
##freeimputation
genepi.github.io/michigan-imp...
As a Christmas gift, we’re excited to show you how to set up your own local server in under 10 minutes.
##freeimputation
genepi.github.io/michigan-imp...
December 19, 2024 at 3:14 PM
This summer, @lukfor.bsky.social and I migrated the Michigan Imputation Server to Nextflow. 2M genomes later, we can say it was a big success.
As a Christmas gift, we’re excited to show you how to set up your own local server in under 10 minutes.
##freeimputation
genepi.github.io/michigan-imp...
As a Christmas gift, we’re excited to show you how to set up your own local server in under 10 minutes.
##freeimputation
genepi.github.io/michigan-imp...
Reposted by Stefan Coassin
In toxic cultures, people prove their intelligence by tearing others down.
In healthy cultures, people use their intelligence to build others up.
Knowledge and expertise are not weapons to wield. They're resources to share.
In healthy cultures, people use their intelligence to build others up.
Knowledge and expertise are not weapons to wield. They're resources to share.
December 9, 2024 at 1:12 PM
In toxic cultures, people prove their intelligence by tearing others down.
In healthy cultures, people use their intelligence to build others up.
Knowledge and expertise are not weapons to wield. They're resources to share.
In healthy cultures, people use their intelligence to build others up.
Knowledge and expertise are not weapons to wield. They're resources to share.
Reposted by Stefan Coassin
What a fantastic talk Silvia delivered today! Zooming into the dark genome is absolutely fascinating, and it may hold many hidden answers waiting to be discovered! @silvidm.bsky.social @sebschoenherr.bsky.social @meduniibk.bsky.social #GeneticsSky#MedSky #CardioSky
December 13, 2024 at 2:41 PM
What a fantastic talk Silvia delivered today! Zooming into the dark genome is absolutely fascinating, and it may hold many hidden answers waiting to be discovered! @silvidm.bsky.social @sebschoenherr.bsky.social @meduniibk.bsky.social #GeneticsSky#MedSky #CardioSky
Reposted by Stefan Coassin
Today @silvidm.bsky.social delivered an impressive talk on her latest research on repetitive regions in the human genome - could they hold the key to the missing heritability? Huge thanks to the Biocenter @meduniibk.bsky.social for hosting this. #ukb #nextflow #lpa #vntrs
December 13, 2024 at 3:05 PM
Today @silvidm.bsky.social delivered an impressive talk on her latest research on repetitive regions in the human genome - could they hold the key to the missing heritability? Huge thanks to the Biocenter @meduniibk.bsky.social for hosting this. #ukb #nextflow #lpa #vntrs
Reposted by Stefan Coassin
December 10, 2024 at 9:06 AM