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lacks22.bsky.social
CLLC
@lacks22.bsky.social
Reposted by CLLC
Reposted by CLLC
Spermidine Enhances Mitochondrial Function and Mitigates Aortic Valve Calcification: Implications for DNA Methyltransferase-1 Activity
www.sciencedirect.com/science/arti...
February 13, 2025 at 10:48 AM
Reposted by CLLC
•Single-cell tracking of tumor organoids maps cell-type transitions & #metabolism
#Cancer stem & differentiated cells vary in glycolytic rates & exchange #lactate
•Lactate drives cancer stem cell identity by disrupting cell fate commitment
•Lactate metabolism epigenetically activates MYC oncogene
February 10, 2025 at 5:54 PM
Reposted by CLLC
Lactate homeostasis is maintained through regulation of glycolysis and lipolysis: Cell Metabolism www.cell.com/cell-metabol...
Lactate homeostasis is maintained through regulation of glycolysis and lipolysis
Lactate elevations are a hallmark of human disease, but the mechanisms regulating lactate levels remain poorly understood. Here, Lee et al. elucidate the mechanisms of lactate homeostasis. These invol...
www.cell.com
February 1, 2025 at 4:13 PM
Reposted by CLLC
An impressive sleep study goes deep on links to lifestyle and diseases
—impact of gut microbiome and diet re: sleep apnea
—big contribution of lifestyle factors
—ability to predict across 16 body systems from sleep data
www.nature.com/articles/s41...
January 27, 2025 at 3:15 PM
Reposted by CLLC
Proximal Ascending aorta is made of #SmoothMuscleCell of dual lineage origins
Luminal side: Wnt1+ #CardiacNeuralCrest
Abluminal side: Mef2c+ #SecondHeartField

Their transcript profiles by scRNAseq + snATACseq👇

#AortaEd
#ATVB 2024 @ahajournals.bsky.social
www.ahajournals.org/doi/10.1161/...
January 26, 2025 at 1:39 PM
Reposted by CLLC
Ergothioneine improves healthspan of aged animals by enhancing cGPDH activity through CSE-dependent persulfidation: Cell Metabolism www.cell.com/cell-metabol...
Ergothioneine improves healthspan of aged animals by enhancing cGPDH activity through CSE-dependent persulfidation
Petrovic et al. demonstrate that ergothioneine acts as an alternative substrate for cystathionine gamma-lyase, an H2S-producing enzyme, leading to an increase of protein persulfidation. The persulfida...
www.cell.com
January 23, 2025 at 5:04 PM
Reposted by CLLC
New work from Coon Lab (Wisconsin), @harperlabhms.bsky.social & Gygi Lab @harvardcellbio.bsky.social reports global proteomics/lipidomics of > 2 dozen Lysosomal Storage Disease mutant cells & reveals iron defects associated with mitochondrial defects in NPC2 mutants www.science.org/doi/10.1126/...
Global cellular proteo-lipidomic profiling of diverse lysosomal storage disease mutants using nMOST
A nanoflow multiomic workflow reveals how lysosomal dysfunction disrupts autophagy and mitochondrial homeostasis in LSD mutants.
www.science.org
January 22, 2025 at 7:43 PM
Reposted by CLLC
MicroRNAs
From their role in cancer
jci.org/articles/vie...
to
Rejuvenating aged mice, w/ enhanced physical and cognitive function, and longevity
sciencedirect.com/science/arti...
+ explainer
nature.com/articles/d41...
January 17, 2025 at 9:08 PM
Reposted by CLLC
New study investigated the heart in a mouse model of ACDase deficiency, demonstrating ACDase deficiency induced lysosomal dysfunction, sphingolipid & cholesterol imbalances, tissue disruption, significant #inflammation, and impaired cardiac function 🧪❤️ #AJP🫀 journals.physiology.org/doi/full/10....
January 14, 2025 at 2:09 AM
Reposted by CLLC
Apology for the non-working link to this intriguing Spatial Skin paper.

Spatiotemporal single-cell roadmap of human skin wound healing

Here is the correct link

www.cell.com/cell-stem-ce...
December 28, 2024 at 12:34 AM
Reposted by CLLC
FAST MS: Software for the Automated Analysis of Top-Down Mass Spectra of Polymeric Molecules Including RNA, DNA, and Proteins #JASMS pubs.acs.org/doi/10.1021/...
FAST MS: Software for the Automated Analysis of Top-Down Mass Spectra of Polymeric Molecules Including RNA, DNA, and Proteins
Top-down mass spectrometry (MS) enables comprehensive characterization of modified proteins and nucleic acids and, when native electrospray ionization (ESI) is used, binding site mapping of their complexes with native or therapeutic ligands. However, the high complexity of top-down MS spectra poses a serious challenge to both manual and automated data interpretation, even when the protein, RNA, or DNA sequence and the type of modification or the ligand are known. Here, we introduce FAST MS, a user-friendly software that identifies, assigns and relatively quantifies signals of molecular and fragment ions in MS and MS/MS spectra of biopolymers with known sequence and provides a toolbox for statistical analysis. FAST MS searches mass spectra for ion signals by comparing all signals in the spectrum with isotopic profiles calculated from known sequences, resulting in superior sensitivity and an increased number of assigned fragment ions compared to algorithms that rely on artificial monomer units while maintaining the false positive rate on a moderate level (<5%). FAST MS is an open-source, cross-platform software for the accurate identification, localization and relative quantification of modifications, even in complex mixtures of positional isomers of proteins, oligonucleotides, or any other user-defined linear polymer.
pubs.acs.org
December 23, 2024 at 7:46 PM
Reposted by CLLC
Spatial omics of human arteries to understand what drives atherosclerosis: highlights role of the microvasculature (vasa vasorum), adventitial inflammation, migration of vascular smooth muscle cells (and more)
nature.com/articles/s44...
December 23, 2024 at 4:20 PM
Reposted by CLLC
Detection of triglyceride metabolism in white blood cells using a novel fluorescently labeled long chain fatty acid analogue https://www.biorxiv.org/content/10.1101/2024.12.18.629134v1
December 23, 2024 at 2:31 PM
Reposted by CLLC
Skin: Fighting infections with self-made antibodies

New research reveals the skin's role as an immune powerhouse, independently producing antibodies to balance its microbiota and prevent harmful infections.

Paper
www.nature.com/articles/s41...

News
www.news-medical.net/news/2024121...
December 21, 2024 at 5:11 PM
Reposted by CLLC
Predicting absolute protein folding stability using generative models

@mcagiada.bsky.social @sokrypton.org & I used ESM-IF to predict ∆G for folding & conformational change

Paper, code and colab
📜 dx.doi.org/10.1002/pro....
💾 github.com/KULL-Centre/...
👩‍💻 colab.research.google.com/github/KULL-...
December 14, 2024 at 2:58 PM
Reposted by CLLC
WOW!!! Beautiful new Nature paper from Burkart Lab UCSD reveals how non-ribosomal peptide natural product synthetases work together.

They use tetrazine click chemistry to capture these huge protein complexes mid-reaction. 3 different snapshots show different states.

www.nature.com/articles/s41...
December 14, 2024 at 3:47 AM
Reposted by CLLC
Intestinal #butyric acid-mediated disruption of #gut hormone secretion and lipid #metabolism in #vasopressin receptor-deficient mice
www.sciencedirect.com/science/arti...
December 13, 2024 at 5:30 PM
Reposted by CLLC
December 12, 2024 at 9:33 PM
Reposted by CLLC
Plasma proteins and brain aging.
Assessment of ~3,000 proteins in ~11, 000 UK biobank participants w/ over 11,000 MRI phenotypes
1. Brain aging is non-linear, with protein waves at ages 57, 70 and 78
December 9, 2024 at 4:07 PM
Reposted by CLLC
Metabolomic profiles differentiate between porto-sinusoidal vascular disorder, cirrhosis, and healthy individuals #JHEPRep #MassSpec www.jhep-reports.eu/article/S258...
DEFINE_ME
www.jhep-reports.eu
December 3, 2024 at 7:23 PM