Klaas van Wijk Lab
kvwlabcornell.bsky.social
Klaas van Wijk Lab
@kvwlabcornell.bsky.social
Research into chloroplast proteostasis & proteolysis - from structure-function discovery to protease networks. Mining large scale protein raw mass spectrometry data for plants (Arabidopsis thaliana and maize) & building PeptideAtlas resources.
Reposted by Klaas van Wijk Lab
And now formally published, a chemical probe that can detect hypoxia in plants - congratulations to all authors! nph.onlinelibrary.wiley.com/doi/full/10....
Hypoxia‐activated fluorescent probes as markers of oxygen levels in plant cells and tissues
Low oxygen signalling in plants is important in development and stress responses. Measurement of oxygen levels in plant cells and tissues is hampered by a lack of chemical tools with which to reliab...
nph.onlinelibrary.wiley.com
May 9, 2025 at 9:35 AM
Reposted by Klaas van Wijk Lab
super important👇
Great News, Michigan!

Lansing #StandUpForScience2025 is happening.

Friday, March 7, 12-4pm, East steps of the Capitol Bldg.

Tell 3 friends! Make a carpool plan! Have a sign-making party! Share with your networks!

#ScienceIsForEveryone

@standupforscience.bsky.social
February 26, 2025 at 1:58 AM
Reposted by Klaas van Wijk Lab
#Microproteins may be the next frontier in #proteomics. But figuring out the publications can be tough.

If you are looking for some advice about microprotein evidence, check out the latest from our consortium. Lead by @carvunis.bsky.social and Aaron Wacholder!

🧬 💻
#genomics
#RNASky

bit.ly/4bgJSDm
Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment
Thousands of short open reading frames (sORFs) are translated outside of annotated coding sequences. Recent studies have pioneered searching for sORF-encoded microproteins in mass spectrometry (MS)-ba...
bit.ly
February 24, 2025 at 12:33 PM
Reposted by Klaas van Wijk Lab
📅New #PlantSciEvents Event Added: Gordon Research Conference on Chloroplast Biotechnology; Engineering Plastids for Better Crops and New Functions🌱

👉https://eventform.plantae.org/plantae.calendar/detail/1367/1743368400000

#PlantScience
Gordon Research Conference on Chloroplast Biotechnology; Engineering Plastids for Better Crops and New Functions
Sun 30 Mar, 5:00 PM - Fri 4 Apr, 9:00 AM [EDT]: The Chloroplast Biotechnology GRC is a premier, international scientific conference focused on advancing the frontiers of science through the…
eventform.plantae.org
January 13, 2025 at 4:03 PM
Reposted by Klaas van Wijk Lab
BIG enhances Arg/N-degron pathway-mediated protein degradation to regulate Arabidopsis hypoxia responses and suberin deposition
academic.oup.com/plcell/advan...
#plantscience
April 14, 2024 at 12:31 PM
Reposted by Klaas van Wijk Lab
If you are interested in TPD tech but worried about synthesis of the compound, you can still design your own TPD agent using Aptamer and N-Degron Ensemble (AptaGron) platform. Check out our strategy from our latest study.

pubs.acs.org/doi/10.1021/...

#KoreaUniversity #PROTAC #TPD
Aptamer and N-Degron Ensemble (AptaGron) as a Target Protein Degradation Strategy
Target protein degradation (TPD) is a promising strategy for catalytic downregulation of target proteins through various cellular proteolytic pathways. Despite numerous reports on novel TPD mechanisms, the discovery of target-specific ligands remains a major challenge. Unlike small-molecule ligands, aptamers offer significant advantages, owing to their SELEX-based systematic screening method. To fully utilize aptamers for TPD, we designed an aptamer and N-degron ensemble system (AptaGron) that circumvents the need for synthetic conjugations between aptamers and proteolysis-recruiting units. In our AptaGron system, a peptide nucleic acid containing an N-degron peptide and a sequence complementary to the aptamer was designed. Using this system, we successfully degraded three target proteins, tau, nucleolin, and eukaryotic initiation factor 4E (eIF4E), which lack specific small-molecule ligands. Our results highlight the potential of the AptaGron approach as a robust platform for targeted protein degradation.
pubs.acs.org
December 22, 2024 at 4:23 AM
Reposted by Klaas van Wijk Lab
PPIs: The messengers between organelles in plant cells. 🌿

Shreya Pramanik covers work from Sedaghatmehr & colleagues #MPIMP_Potsdam exploring the lipid composition of chloroplast membranes by developing PPI biosensors. #preprint #PlantBiology

#preLight ⬇️👀
prelights.biologists.com/highlights/n...
New evidence for the presence and function of phosphoinositides (PPIs) in the chloroplast - preLights
PPIs: The messengers between organelles in plant cells.
prelights.biologists.com
December 12, 2024 at 4:04 PM
Reposted by Klaas van Wijk Lab
Second paper from the lab out today (woohoo!). This one led by Rachael DeTar. Check out what happens to mito+plastid translation machinery in plants that have lost photosynthesis!

Published in @pnas.org: www.pnas.org/doi/10.1073/...

Also available on bioRxiv: www.biorxiv.org/content/10.1...
December 18, 2024 at 7:26 PM
Reposted by Klaas van Wijk Lab
Species-wide inventory of Arabidopsis thaliana organellar variation reveals ample phenotypic variation for photosynthetic performance | PNAS www.pnas.org/doi/10.1073/... @pnas.org
Species-wide inventory of Arabidopsis thaliana organellar variation reveals ample phenotypic variation for photosynthetic performance | PNAS
Efforts to improve photosynthetic performance are increasingly employing natural genetic variation. However, genetic variation in the organellar ge...
www.pnas.org
November 28, 2024 at 7:08 AM
Reposted by Klaas van Wijk Lab
Abstract Submission OPEN for #ICAR2025 International Conference on Arabidopsis Research!
Topics for Concurrent and Workshop sessions published!
📅 June 16-20 Ghent 🇧🇪
🕸️ icar2025.com
Summary. - International Conference on Arabidopsis Research: ICAR2025
icar2025.com
December 1, 2024 at 7:39 PM
Reposted by Klaas van Wijk Lab
Happy to be here on Bluesky. We'll be doing a little series of "meet the committee members" over the next few weeks, having just held our elections for new members. Look out for the old and new faces coming soon 😊
December 8, 2024 at 7:00 PM
Reposted by Klaas van Wijk Lab
Spatial Proteomics is the Method of the Year 2024!
December 6, 2024 at 6:14 PM
Trying out Bluesky social for posting and following science news about the van Wijk lab in Cornell, novel discoveries in proteolysis & proteostasis, chloroplast biology and advances in proteomics and mass spectrometry
December 8, 2024 at 10:48 PM