John McBride
@johnmcbride4lyf.bsky.social
Scientist studying the evolution of proteins and music (so far, separately).
https://scholar.google.com/citations?hl=en&user=PYTwBWIAAAAJ
https://github.com/jomimc
https://scholar.google.com/citations?hl=en&user=PYTwBWIAAAAJ
https://github.com/jomimc
Reposted by John McBride
Delighted to share our latest research on consonance. We asked participants from India and UK to rate how “tense” different harmonic intervals sound. We found that musicians across both cultures agreed almost perfectly on which intervals feel tense or relaxed, however, ....
November 6, 2025 at 9:44 AM
Delighted to share our latest research on consonance. We asked participants from India and UK to rate how “tense” different harmonic intervals sound. We found that musicians across both cultures agreed almost perfectly on which intervals feel tense or relaxed, however, ....
Reposted by John McBride
I wish I could impress upon my students that "agree" or "disagree" are not the only two options for engaging with, or responding to, a piece of philosophy that tells you something about the world or about how experience is had.
You don't need to agree with a thing for it to tell you something.
You don't need to agree with a thing for it to tell you something.
October 31, 2025 at 5:52 AM
I wish I could impress upon my students that "agree" or "disagree" are not the only two options for engaging with, or responding to, a piece of philosophy that tells you something about the world or about how experience is had.
You don't need to agree with a thing for it to tell you something.
You don't need to agree with a thing for it to tell you something.
Reposted by John McBride
Replication Research (R2), a diamond open access journal, has joined our growing list of PCI-friendly journals 🎉 Learn more about them here is.gd/r2_journal #PsychSciSky #SciPub
About the Journal | Replication Research
Replication Research is an interdisciplinary journal for replication research. This includes reproductions, where the same code and data are used to verify the originally reported results, close…
is.gd
October 20, 2025 at 9:58 PM
Replication Research (R2), a diamond open access journal, has joined our growing list of PCI-friendly journals 🎉 Learn more about them here is.gd/r2_journal #PsychSciSky #SciPub
Reposted by John McBride
While journal publishing has always been deeply problematic, hurting both the pace and trajectory of science, something is happening in this moment that is finally causing the system to crumble under its own weight and cost.
1/
1/
September 8, 2025 at 7:52 PM
While journal publishing has always been deeply problematic, hurting both the pace and trajectory of science, something is happening in this moment that is finally causing the system to crumble under its own weight and cost.
1/
1/
Reposted by John McBride
Amos Goldberg is an Israeli professor of Holocaust history at the Hebrew University of Jerusalem. He teaches Holocaust and genocide history.
When does Goldberg think the genocide began? In April 2024, Goldberg concluded that Israel was committing genocide …
www.middleeasteye.net/news/israel-...
When does Goldberg think the genocide began? In April 2024, Goldberg concluded that Israel was committing genocide …
www.middleeasteye.net/news/israel-...
Israel’s war on Gaza: Why do legal experts say it’s genocide?
Experts, including UN rapporteur Francesca Albanese, are unanimous: the most serious of international crimes is happening in Gaza
www.middleeasteye.net
August 17, 2025 at 8:13 PM
Amos Goldberg is an Israeli professor of Holocaust history at the Hebrew University of Jerusalem. He teaches Holocaust and genocide history.
When does Goldberg think the genocide began? In April 2024, Goldberg concluded that Israel was committing genocide …
www.middleeasteye.net/news/israel-...
When does Goldberg think the genocide began? In April 2024, Goldberg concluded that Israel was committing genocide …
www.middleeasteye.net/news/israel-...
Reposted by John McBride
Cool new @PeerCommunityIn.ecoevo.social.ap.brid.gy recommendation by @alexmesoudi.com of an article on melodic evolution by @johnmcbride4lyf.bsky.social et al.
evolbiol.peercommunityin.org/articles/rec...
evolbiol.peercommunityin.org/articles/rec...
Human cognition structures cross-cultural variation in musical m...
evolbiol.peercommunityin.org
July 13, 2025 at 11:36 AM
Cool new @PeerCommunityIn.ecoevo.social.ap.brid.gy recommendation by @alexmesoudi.com of an article on melodic evolution by @johnmcbride4lyf.bsky.social et al.
evolbiol.peercommunityin.org/articles/rec...
evolbiol.peercommunityin.org/articles/rec...
Reposted by John McBride
How can we reform science? I have some ideas. But I am not sure you’ll like them, because they don’t promise much. elevanth.org/blog/2025/07...
Which Kind of Science Reform
What hope is there for science reform, if we can't agree on what to reform? Right now, principles are more important than practices.
elevanth.org
July 9, 2025 at 1:40 PM
How can we reform science? I have some ideas. But I am not sure you’ll like them, because they don’t promise much. elevanth.org/blog/2025/07...
Reposted by John McBride
From today, all new submissions to Nature that are published will be accompanied by referees’ reports and author responses — to illuminate the process of producing rigorous science
https://go.nature.com/4kIRR01
https://go.nature.com/4kIRR01
Transparent peer review to be extended to all of Nature’s research papers
From today, all new submissions to Nature that are published will be accompanied by referees’ reports and author responses — to illuminate the process of producing rigorous science.
go.nature.com
June 16, 2025 at 4:44 PM
From today, all new submissions to Nature that are published will be accompanied by referees’ reports and author responses — to illuminate the process of producing rigorous science
https://go.nature.com/4kIRR01
https://go.nature.com/4kIRR01
Reposted by John McBride
Paper is finally up and open access (www.journals.uchicago.edu/doi/10.1086/...), it's a sequel to an earlier paper where we'd argued that there's not good evidence that pre-publication peer review is a net benefit (www.journals.uchicago.edu/doi/10.1093/...). So in this one we suggest an alternative.
June 14, 2025 at 8:28 AM
Paper is finally up and open access (www.journals.uchicago.edu/doi/10.1086/...), it's a sequel to an earlier paper where we'd argued that there's not good evidence that pre-publication peer review is a net benefit (www.journals.uchicago.edu/doi/10.1093/...). So in this one we suggest an alternative.
Reposted by John McBride
✨We are organising (again) an online workshop on Theoretical Modeling for PhD candidates and Master students in cognitive science and psychology. Check out the website and the schedule: Registration is open! (closes July 1, spaces are limited) 🧵1/n computationalcognitivescience.github.io/workshop/
May 29, 2025 at 7:33 PM
✨We are organising (again) an online workshop on Theoretical Modeling for PhD candidates and Master students in cognitive science and psychology. Check out the website and the schedule: Registration is open! (closes July 1, spaces are limited) 🧵1/n computationalcognitivescience.github.io/workshop/
I joined bsky as a scientist, not as an activist, but I feel compelled to share this video essay on the genocidal nature of the war in Gaza.
I support the right of Israel to exist, and I commiserate with my Israeli friends on the brutal horrors of Oct 7.
But this brutal war must stop, now.
I support the right of Israel to exist, and I commiserate with my Israeli friends on the brutal horrors of Oct 7.
But this brutal war must stop, now.
Is Israel Committing Genocide in Gaza?
YouTube video by Alonso Gurmendi
www.youtube.com
May 30, 2025 at 4:20 PM
I joined bsky as a scientist, not as an activist, but I feel compelled to share this video essay on the genocidal nature of the war in Gaza.
I support the right of Israel to exist, and I commiserate with my Israeli friends on the brutal horrors of Oct 7.
But this brutal war must stop, now.
I support the right of Israel to exist, and I commiserate with my Israeli friends on the brutal horrors of Oct 7.
But this brutal war must stop, now.
Reposted by John McBride
We who study the philosophy/sociology/science of science etc. have an obligation to explain the true gold standard.
It's not a checklist that makes a result impeccable, but rather the development of consensus among experts through nuanced interpretation of multiple (imperfect) sources of data.
It's not a checklist that makes a result impeccable, but rather the development of consensus among experts through nuanced interpretation of multiple (imperfect) sources of data.
May 27, 2025 at 9:30 PM
We who study the philosophy/sociology/science of science etc. have an obligation to explain the true gold standard.
It's not a checklist that makes a result impeccable, but rather the development of consensus among experts through nuanced interpretation of multiple (imperfect) sources of data.
It's not a checklist that makes a result impeccable, but rather the development of consensus among experts through nuanced interpretation of multiple (imperfect) sources of data.
Reposted by John McBride
Reposted by John McBride
If true (which I have no idea about) bluesky should stop it.
Amigues, por favor, firmad esta carta cuando tengáis un momento. Solo tenéis que dar vuestro nombre y/o usuario.
Bluesky está borrando sistemáticamente las cuentas de gazatíes, silenciándoles y ocultando su sufrimiento.
Bluesky está borrando sistemáticamente las cuentas de gazatíes, silenciándoles y ocultando su sufrimiento.
We were hoping that this letter to @bsky.app could first be shared by a Gazan, but we were too worried that doing so would get their account deleted so we are sharing first.
You can sign on to the letter about the unfair treatment of Gazans on Bluesky here:
docs.google.com/document/d/1...
You can sign on to the letter about the unfair treatment of Gazans on Bluesky here:
docs.google.com/document/d/1...
May 25, 2025 at 12:39 PM
If true (which I have no idea about) bluesky should stop it.
Reposted by John McBride
This is unfathomable...
The UN must intervene, all governments and organizations who can, must intervene and deliver large scale humanitarian aid to Gaza.
The UN must intervene, all governments and organizations who can, must intervene and deliver large scale humanitarian aid to Gaza.
May 20, 2025 at 9:28 PM
This is unfathomable...
The UN must intervene, all governments and organizations who can, must intervene and deliver large scale humanitarian aid to Gaza.
The UN must intervene, all governments and organizations who can, must intervene and deliver large scale humanitarian aid to Gaza.
Reposted by John McBride
Our Programmatic Stage 1 Registered Report exploring cross-cultural consistency in song-speech relationships ("Many Voices 3") received In Principle Acceptance from @pci-regreports.bsky.social!
Recommendation & public reviews: rr.peercommunityin.org/articles/rec...
Manuscript: osf.io/c2dba
(1/4)
Recommendation & public reviews: rr.peercommunityin.org/articles/rec...
Manuscript: osf.io/c2dba
(1/4)
May 9, 2025 at 4:27 AM
Our Programmatic Stage 1 Registered Report exploring cross-cultural consistency in song-speech relationships ("Many Voices 3") received In Principle Acceptance from @pci-regreports.bsky.social!
Recommendation & public reviews: rr.peercommunityin.org/articles/rec...
Manuscript: osf.io/c2dba
(1/4)
Recommendation & public reviews: rr.peercommunityin.org/articles/rec...
Manuscript: osf.io/c2dba
(1/4)
Reposted by John McBride
Are dance & infant-directed song human universals? Like many people, I've long thought so.
But in a new paper in Current Biology, Kim Hill & I report that the Northern Aché (Paraguay) lacked both behaviors, likely losing them after cultural collapse.
Open-access link: www.cell.com/current-biol...
But in a new paper in Current Biology, Kim Hill & I report that the Northern Aché (Paraguay) lacked both behaviors, likely losing them after cultural collapse.
Open-access link: www.cell.com/current-biol...
Loss of dance and infant-directed song among the Northern Aché
Singh and Hill report no evidence of dance or infant-directed song among the Northern
Aché of Paraguay, based on 122 months of fieldwork. Their findings challenge claims
of these behaviors’ universali...
www.cell.com
April 29, 2025 at 3:13 PM
Are dance & infant-directed song human universals? Like many people, I've long thought so.
But in a new paper in Current Biology, Kim Hill & I report that the Northern Aché (Paraguay) lacked both behaviors, likely losing them after cultural collapse.
Open-access link: www.cell.com/current-biol...
But in a new paper in Current Biology, Kim Hill & I report that the Northern Aché (Paraguay) lacked both behaviors, likely losing them after cultural collapse.
Open-access link: www.cell.com/current-biol...
Reposted by John McBride
"De novo prediction of protein structural dynamics"
I'll be presenting an overview of the field tomorrow at a workshop. Link to a PDF copy of the presentation: delalamo.xyz/assets/post_...
I'll be presenting an overview of the field tomorrow at a workshop. Link to a PDF copy of the presentation: delalamo.xyz/assets/post_...
delalamo.xyz
April 27, 2025 at 2:16 PM
"De novo prediction of protein structural dynamics"
I'll be presenting an overview of the field tomorrow at a workshop. Link to a PDF copy of the presentation: delalamo.xyz/assets/post_...
I'll be presenting an overview of the field tomorrow at a workshop. Link to a PDF copy of the presentation: delalamo.xyz/assets/post_...
Reposted by John McBride
Looks interesting @johnmcbride4lyf.bsky.social and others interested in scale tunings
www.cell.com/current-biol...
www.cell.com/current-biol...
Simple frequency ratios naturally make precisely perceived melodies
Demany et al. provide experimental evidence that musical scales employing simple frequency
ratios (2:1, 3:2, and 4:3) are intrinsically advantageous for the perceptual processing
of melodies, at odds ...
www.cell.com
April 23, 2025 at 8:25 PM
Looks interesting @johnmcbride4lyf.bsky.social and others interested in scale tunings
www.cell.com/current-biol...
www.cell.com/current-biol...
Work with Steven Brown and Elizabeth Phillips: They annotated by ear an impressive set of ~400 scales from vocal music across the world. I used algorithms to get accurate estimates of scale degrees in cents. Cool stuff!
Data is all available here:
zenodo.org/records/1060...
Will release code later
Data is all available here:
zenodo.org/records/1060...
Will release code later
Musical scales optimize pitch spacing: a global analysis of traditional vocal music - Humanities and Social Sciences Communications
Humanities and Social Sciences Communications - Musical scales optimize pitch spacing: a global analysis of traditional vocal music
www.nature.com
April 17, 2025 at 8:59 AM
Work with Steven Brown and Elizabeth Phillips: They annotated by ear an impressive set of ~400 scales from vocal music across the world. I used algorithms to get accurate estimates of scale degrees in cents. Cool stuff!
Data is all available here:
zenodo.org/records/1060...
Will release code later
Data is all available here:
zenodo.org/records/1060...
Will release code later
Reposted by John McBride
Our beautiful birds of prey are routinely and illegally slaughtered on driven grouse moors . If you are as sick of this criminal persecution as me then please sign this @wildjustice.bsky.social petition petition.parliament.uk/petitions/70... Please RT
April 15, 2025 at 8:42 AM
Our beautiful birds of prey are routinely and illegally slaughtered on driven grouse moors . If you are as sick of this criminal persecution as me then please sign this @wildjustice.bsky.social petition petition.parliament.uk/petitions/70... Please RT
My latest work, out in Nature Physics. This takes the prize for longest project I've been involved in (although I joined late), slightly beating the 6 years that my work on the evolution of musical scales took.
summary: tools from physics may pinpoint hotspots in proteins that are key to dynamics
summary: tools from physics may pinpoint hotspots in proteins that are key to dynamics
#Enzymes = viscoelastic catalytic machines
whose mechano-chemical specifications are encoded in the gene.
QY Tang has now written a lucid news & views piece on this idea in doi.org/10.1038/s415...
whose mechano-chemical specifications are encoded in the gene.
QY Tang has now written a lucid news & views piece on this idea in doi.org/10.1038/s415...
The mechanics of protein sweet spots - Nature Physics
Proteins rely on dynamic flexibility to function as life’s molecular machines. Now, artificial intelligence predictions and mechanics experiments reveal how mutations at specific protein sites modulat...
doi.org
April 7, 2025 at 9:56 AM
My latest work, out in Nature Physics. This takes the prize for longest project I've been involved in (although I joined late), slightly beating the 6 years that my work on the evolution of musical scales took.
summary: tools from physics may pinpoint hotspots in proteins that are key to dynamics
summary: tools from physics may pinpoint hotspots in proteins that are key to dynamics
Reposted by John McBride
Cultural differences and similarities in animals sounds: cats [miau] in almost all languages, but pigs [ojŋk], [røf], [ʔut it]...
pudding.cool/2025/03/lang...
pudding.cool/2025/03/lang...
How do animals sound across languages?
Analyzing animal onomatopoeia across languages can demystify how we shape sound into meaning.
pudding.cool
March 19, 2025 at 12:24 PM
Cultural differences and similarities in animals sounds: cats [miau] in almost all languages, but pigs [ojŋk], [røf], [ʔut it]...
pudding.cool/2025/03/lang...
pudding.cool/2025/03/lang...
Anyone want to listen to music from protein sequences (technically NMR data)?
I was wondering when I would get round to integrating my protein and music evolution research themes, but it looks like someone else has got there first!
www.biorxiv.org/content/10.1...
I was wondering when I would get round to integrating my protein and music evolution research themes, but it looks like someone else has got there first!
www.biorxiv.org/content/10.1...
March 19, 2025 at 7:55 AM
Anyone want to listen to music from protein sequences (technically NMR data)?
I was wondering when I would get round to integrating my protein and music evolution research themes, but it looks like someone else has got there first!
www.biorxiv.org/content/10.1...
I was wondering when I would get round to integrating my protein and music evolution research themes, but it looks like someone else has got there first!
www.biorxiv.org/content/10.1...
Reposted by John McBride
Bluesky tip for newbies: Bluesky has no real algorithm. Likes here do nothing but show the poster that you enjoyed their content.
That kindness is always going to be appreciated by creators, but if you want to help to boost something here, you have to repost it so others see it. 🙂
That kindness is always going to be appreciated by creators, but if you want to help to boost something here, you have to repost it so others see it. 🙂
November 18, 2024 at 10:27 AM
Bluesky tip for newbies: Bluesky has no real algorithm. Likes here do nothing but show the poster that you enjoyed their content.
That kindness is always going to be appreciated by creators, but if you want to help to boost something here, you have to repost it so others see it. 🙂
That kindness is always going to be appreciated by creators, but if you want to help to boost something here, you have to repost it so others see it. 🙂