ISCB RegSys COSI
@iscb-regsys.bsky.social
The ISCB Regulatory and Systems Genomics Community of Special Interest (RegSys COSI) focuses on computational methods for studying gene/systems regulation
http://cosi.iscb.org/wiki/RegSIG:Home
http://cosi.iscb.org/wiki/RegSIG:Home
Reposted by ISCB RegSys COSI
What a fantastic #ISMBECCB2025 conference it has been, with an outstanding #RegSys @iscb-regsys.bsky.social COSI track!
Thanks, everyone, for submitting, attending, presenting, and organizing @iscb.bsky.social @eccb-europe.bsky.social
Thanks, everyone, for submitting, attending, presenting, and organizing @iscb.bsky.social @eccb-europe.bsky.social
July 24, 2025 at 7:00 PM
What a fantastic #ISMBECCB2025 conference it has been, with an outstanding #RegSys @iscb-regsys.bsky.social COSI track!
Thanks, everyone, for submitting, attending, presenting, and organizing @iscb.bsky.social @eccb-europe.bsky.social
Thanks, everyone, for submitting, attending, presenting, and organizing @iscb.bsky.social @eccb-europe.bsky.social
Join us in room 11 for the opening talk of the RegSys COSI track in just 20 minutes from the amazing @verapancaldi.bsky.social - don’t miss it! #ISMBECCB2025
July 23, 2025 at 10:02 AM
Join us in room 11 for the opening talk of the RegSys COSI track in just 20 minutes from the amazing @verapancaldi.bsky.social - don’t miss it! #ISMBECCB2025
Reposted by ISCB RegSys COSI
Today marks the start of the #RegSys @iscb-regsys.bsky.social track at ##ISMBECCB2025! Very much looking forward to listening to the exciting science that will be presented.
Join us in room 11BC today and tomorrow.
Join us in room 11BC today and tomorrow.
July 23, 2025 at 7:41 AM
Today marks the start of the #RegSys @iscb-regsys.bsky.social track at ##ISMBECCB2025! Very much looking forward to listening to the exciting science that will be presented.
Join us in room 11BC today and tomorrow.
Join us in room 11BC today and tomorrow.
Reposted by ISCB RegSys COSI
The #RegSys @iscb-regsys.bsky.social track is gonna be outstanding again this year with a great selection of talks and keynotes @verapancaldi.bsky.social, Mafalda Dias, Roser Vento-Tormo, and @lucapinello.bsky.social !
www.iscb.org/ismbeccb2025...
www.iscb.org/ismbeccb2025...
RegSys
ISCB - International Society for Computational Biology
www.iscb.org
July 21, 2025 at 8:02 AM
The #RegSys @iscb-regsys.bsky.social track is gonna be outstanding again this year with a great selection of talks and keynotes @verapancaldi.bsky.social, Mafalda Dias, Roser Vento-Tormo, and @lucapinello.bsky.social !
www.iscb.org/ismbeccb2025...
www.iscb.org/ismbeccb2025...
Reposted by ISCB RegSys COSI
Day 3 of #ISMBECCB2025 started with an excellent talk from @jameszou.bsky.social which presented how AI can form virtual labs to discuss problems, how can AI reanalyse research data to get new biological results, and how we can interpret complex AI predictions 💻🤖
July 22, 2025 at 8:54 AM
Day 3 of #ISMBECCB2025 started with an excellent talk from @jameszou.bsky.social which presented how AI can form virtual labs to discuss problems, how can AI reanalyse research data to get new biological results, and how we can interpret complex AI predictions 💻🤖
Reposted by ISCB RegSys COSI
📢 1 week left to submit your abstract for #ISMBECCB2025!
Join the global #bioinformatics and #computationalbiology community at one of the top conferences in the field!
🗓️ Deadline: April 17, 2025
📥 Submit here: https://www.iscb.org/ismbeccb2025-call-for-abstracts
Join the global #bioinformatics and #computationalbiology community at one of the top conferences in the field!
🗓️ Deadline: April 17, 2025
📥 Submit here: https://www.iscb.org/ismbeccb2025-call-for-abstracts
April 10, 2025 at 12:01 PM
📢 1 week left to submit your abstract for #ISMBECCB2025!
Join the global #bioinformatics and #computationalbiology community at one of the top conferences in the field!
🗓️ Deadline: April 17, 2025
📥 Submit here: https://www.iscb.org/ismbeccb2025-call-for-abstracts
Join the global #bioinformatics and #computationalbiology community at one of the top conferences in the field!
🗓️ Deadline: April 17, 2025
📥 Submit here: https://www.iscb.org/ismbeccb2025-call-for-abstracts
Reposted by ISCB RegSys COSI
AI for modelling infectious disease epidemics https://www.nature.com/articles/s41586-024-08564-w (read free: https://rdcu.be/eaA6O) 🧬🖥️🧪
February 20, 2025 at 9:54 AM
AI for modelling infectious disease epidemics https://www.nature.com/articles/s41586-024-08564-w (read free: https://rdcu.be/eaA6O) 🧬🖥️🧪
Reposted by ISCB RegSys COSI
🚨 PhD in Bioinformatics & Gene Regulation 🚨
Join the Bioinformatics in Life Science (BiLS) initiative through a multidisciplinary project to unravel gene regulation from DNA to proteins, co-supervised by E. Valen @jonnings.bsky.social and me!
www.jobbnorge.no/en/available...
Join the Bioinformatics in Life Science (BiLS) initiative through a multidisciplinary project to unravel gene regulation from DNA to proteins, co-supervised by E. Valen @jonnings.bsky.social and me!
www.jobbnorge.no/en/available...
PhD Research Fellow in Bioinformatics and Gene Regulation (274506) | University of Oslo
Job title: PhD Research Fellow in Bioinformatics and Gene Regulation (274506), Employer: University of Oslo, Deadline: Friday, February 28, 2025
www.jobbnorge.no
February 4, 2025 at 7:45 PM
🚨 PhD in Bioinformatics & Gene Regulation 🚨
Join the Bioinformatics in Life Science (BiLS) initiative through a multidisciplinary project to unravel gene regulation from DNA to proteins, co-supervised by E. Valen @jonnings.bsky.social and me!
www.jobbnorge.no/en/available...
Join the Bioinformatics in Life Science (BiLS) initiative through a multidisciplinary project to unravel gene regulation from DNA to proteins, co-supervised by E. Valen @jonnings.bsky.social and me!
www.jobbnorge.no/en/available...
Reposted by ISCB RegSys COSI
Excited to post my first #skySplain about our recent work published yesterday in Nature Genetics! www.nature.com/articles/s41.... One of the first authors of this study - Annika Vannan – actually wrote this breakdown, but she's not yet over here on bluesky and asked me to post!
Spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis - Nature Genetics
Xenium spatial transcriptomic profiling of pulmonary fibrosis characterizes cell composition dynamics and histopathological features associated with the disease.
www.nature.com
February 4, 2025 at 2:11 PM
Excited to post my first #skySplain about our recent work published yesterday in Nature Genetics! www.nature.com/articles/s41.... One of the first authors of this study - Annika Vannan – actually wrote this breakdown, but she's not yet over here on bluesky and asked me to post!
Reposted by ISCB RegSys COSI
Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Hackathon - March 2025 (Online / Distributed)
A virtual hackathon with local sites to develop nf-core together
nf-co.re
February 3, 2025 at 12:56 PM
Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Reposted by ISCB RegSys COSI
Exciting new tool to make the most out of multimodal single-cell data from our friends and long-term collaborators of the @fabian_theis lab - check it out, it works beautifully and really makes sense out of your complex data! 👇👍😉
Excited to see Moscot (moscot-tools.org) published in @Nature! We scaled Optimal Transport (OT) in single-cell genomics & added multimodality together with spatiotemporal trajectory inference, finding exciting new biology in the pancreas! 🚀 Read at www.nature.com/articles/s41...
Mapping cells through time and space with moscot - Nature
Moscot is an optimal transport approach that overcomes current limitations of similar methods to enable multimodal, scalable and consistent single-cell analyses of datasets across spatial and temporal...
www.nature.com
January 23, 2025 at 6:43 AM
Exciting new tool to make the most out of multimodal single-cell data from our friends and long-term collaborators of the @fabian_theis lab - check it out, it works beautifully and really makes sense out of your complex data! 👇👍😉
Reposted by ISCB RegSys COSI
Multiscale footprints reveal the organization of cis-regulatory elements
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Multiscale footprints reveal the organization of cis-regulatory elements - Nature
We developed PRINT, a computational method that identifies footprints of DNA–protein interactions from bulk and single-cell chromatin accessibility data across multiple scales of protein size.
www.nature.com
January 22, 2025 at 8:21 PM
Multiscale footprints reveal the organization of cis-regulatory elements
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by ISCB RegSys COSI
How can we build an Al virtual cell that simulates all functions and interactions of a cell? How will it transform research and drive breakthroughs in programmable biology, drug discovery and personalized medicine?
Take a look at our paper in @cellpress.bsky.social!
www.cell.com/cell/fulltex...
Take a look at our paper in @cellpress.bsky.social!
www.cell.com/cell/fulltex...
December 12, 2024 at 8:09 PM
How can we build an Al virtual cell that simulates all functions and interactions of a cell? How will it transform research and drive breakthroughs in programmable biology, drug discovery and personalized medicine?
Take a look at our paper in @cellpress.bsky.social!
www.cell.com/cell/fulltex...
Take a look at our paper in @cellpress.bsky.social!
www.cell.com/cell/fulltex...
Reposted by ISCB RegSys COSI
🧪 let's see the impact of 🔵 sky for finding expertise! My dept is in ASAP need of somebody with bioinformatics expertise to provide content for several course developments. Work is remote and contract, courses will be online asynch. Courses are for bio and data science majors. Pls spread the word! 🙏
January 13, 2025 at 6:41 PM
🧪 let's see the impact of 🔵 sky for finding expertise! My dept is in ASAP need of somebody with bioinformatics expertise to provide content for several course developments. Work is remote and contract, courses will be online asynch. Courses are for bio and data science majors. Pls spread the word! 🙏
Reposted by ISCB RegSys COSI
🌍✨ Join the 14th ISCB Wikipedia Competition, running until May 2!
Students and postdocs can win monetary prizes + a 1-year ISCB membership by creating or improving #Wikipedia articles related to #computationalbiology.
Learn more here:
Students and postdocs can win monetary prizes + a 1-year ISCB membership by creating or improving #Wikipedia articles related to #computationalbiology.
Learn more here:
t.ly
January 17, 2025 at 11:20 AM
🌍✨ Join the 14th ISCB Wikipedia Competition, running until May 2!
Students and postdocs can win monetary prizes + a 1-year ISCB membership by creating or improving #Wikipedia articles related to #computationalbiology.
Learn more here:
Students and postdocs can win monetary prizes + a 1-year ISCB membership by creating or improving #Wikipedia articles related to #computationalbiology.
Learn more here:
Reposted by ISCB RegSys COSI
A comprehensive benchmark and guide for sequence-function interpretable deep learning models in genomics https://www.biorxiv.org/content/10.1101/2025.01.06.631405v1 🧬🖥️🧪 https://github.com/bioczsun/cisFinder
January 10, 2025 at 9:00 PM
A comprehensive benchmark and guide for sequence-function interpretable deep learning models in genomics https://www.biorxiv.org/content/10.1101/2025.01.06.631405v1 🧬🖥️🧪 https://github.com/bioczsun/cisFinder
Reposted by ISCB RegSys COSI
Friends and colleagues, I’ve written a book on effective functional genomics study design, which will be available on Amazon in a couple of weeks. Sharing the TOC to spark interest. I hope students and those planning genomics experiments will find it useful! I’ll share updates soon
January 10, 2025 at 3:40 AM
Friends and colleagues, I’ve written a book on effective functional genomics study design, which will be available on Amazon in a couple of weeks. Sharing the TOC to spark interest. I hope students and those planning genomics experiments will find it useful! I’ll share updates soon
Reposted by ISCB RegSys COSI
Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states academic.oup.com/nar/advance...
January 11, 2025 at 3:00 AM
Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states academic.oup.com/nar/advance...
Reposted by ISCB RegSys COSI
We want to make JASPAR (jaspar.elixir.no) even better for our users! Please share your experience and help us enhance the database by taking a quick survey: nettskjema.no/a/467842.
Your insights make a difference!
Your insights make a difference!
January 8, 2025 at 4:53 PM
We want to make JASPAR (jaspar.elixir.no) even better for our users! Please share your experience and help us enhance the database by taking a quick survey: nettskjema.no/a/467842.
Your insights make a difference!
Your insights make a difference!
We're on Bluesky! Hello to all our friends in the #ComputationalBiology community, we're excited to hear all about your amazing #bioinformatics work!
January 6, 2025 at 4:47 PM
We're on Bluesky! Hello to all our friends in the #ComputationalBiology community, we're excited to hear all about your amazing #bioinformatics work!