Thomas Frank
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frankfishlab.bsky.social
Thomas Frank
@frankfishlab.bsky.social
Reposted by Thomas Frank
POV: you are a young woman celebrating a recent academic success
November 17, 2025 at 7:20 PM
Reposted by Thomas Frank
🎉 I am very glad to share that our paper on the rapid isotropic light-sheet microscope has just been published in Nature Biotechnology @natbiotech.nature.com.

🔗 Read the full article:
www.nature.com/articles/s41...
Isotropic, aberration-corrected light sheet microscopy for rapid high-resolution imaging of cleared tissue - Nature Biotechnology
A light-sheet microscope built from off-the-shelf components enables high-resolution clear tissue imaging.
www.nature.com
November 14, 2025 at 9:27 PM
Reposted by Thomas Frank
Massive FOMo seeing the posts of people heading to #SfN2025, all that beach...ehm.. science I’m missing 😭

If you’re there, go say hi to the brilliant Bruno Pilcher and the INSS crew, who just built my lab a custom multiphoton microscope with a spatial light modulator that is pure chef’s kiss 👨‍🍳💋✨
Independent NeuroScience Services INSS was registered as a company on 14th November 2016, which means it's our 9th birthday today! As a birthday present we've treated ourselves to an SfN exhibitor booth for the first time ever. Come and say hello at Booth #3327
November 15, 2025 at 2:00 PM
Reposted by Thomas Frank
New work from Baier Lab 🧠 🐟

🔗 to paper: www.sciencedirect.com/science/arti...
November 10, 2025 at 3:20 PM
Reposted by Thomas Frank
Ohhh, that looks cool, also quite a few nice refs to the immune role of neuropeptides, including in the gut
November 10, 2025 at 10:52 AM
Reposted by Thomas Frank
New paper with @gili-ezranevo.bsky.social & Silvia Henriques from @ribeirocarlitos.bsky.social's lab out in @currentbiology.bsky.social. Appetite, driven by amino acid need 🥚🍖 reshapes olfactory receptor expression so flies 🪰 seek bacteria 🦠 and fermented cues 🥫 to restore nutritional balance ⚖️.
🦠 Microbes for dinner, anyone?

When fruit flies go short on nutrients, their brains literally change the way they smell the world, helping them sniff out the microbes they need to survive.

👉 Article: tinyurl.com/yw4rfph2
🔗 Paper: tinyurl.com/3j4avr4x

@currentbiology.bsky.social
October 28, 2025 at 12:53 PM
Reposted by Thomas Frank
First neurons didn’t appear overnight. We trace their roots to ancient secretory cells - showing how lifestyle & behavior shaped the evolution of first synapses.🧠🌊 #Evolution #Neuroscience

Our latest in @natrevneuro.nature.com
Link: rdcu.be/eMX3E

@jeffcolgren.bsky.social @msarscentre.bsky.social
The evolutionary origins of synaptic proteins and their changing roles in different organisms across evolution
Nature Reviews Neuroscience - Recent studies have shed further light on the evolutionary origins of chemical synapses, In this Review, Colgren and Burkhardt explore how ancient proteins were...
rdcu.be
October 27, 2025 at 6:48 PM
Reposted by Thomas Frank
Your reminder that many of the muscles, nerves and bones you use to hear and talk with correspond to gill structures in fish. 🧪 #evolution #paleontology
November 24, 2024 at 8:30 PM
Reposted by Thomas Frank
Our latest study on the neurobiology of collective behavior is now posted as a preprint, led by UCSD PhD student Jo-Hsien Yu @anitajhyu.bsky.social @ucsandiego.bsky.social @danionella.bsky.social

www.biorxiv.org/content/10.1...
September 30, 2025 at 7:36 PM
Reposted by Thomas Frank
The most universally agreed upon property that sets emotion/affect apart from everything else is valence: approach/avoid; pleasant/unpleasant. Here they target its computation in flies, where you can really figure out the biology. We know so little about how valence is computed by brains. Exciting!
How is valence computed in the brain? Check out our new preprint about a single cell that integrates excitatory and inhibitory input across modalities according to valence and impacts behavioral decisions. An exciting collaboration across many labs. Enjoy reading!
www.biorxiv.org/content/10.1...
A multisensory, bidirectional, valence encoder guides behavioral decisions
A key function of the brain is to categorize sensory cues as repulsive or attractive and respond accordingly. While we have some understanding of how sensory information is processed in the sensory pe...
www.biorxiv.org
September 27, 2025 at 12:18 PM
Reposted by Thomas Frank
How is valence computed in the brain? Check out our new preprint about a single cell that integrates excitatory and inhibitory input across modalities according to valence and impacts behavioral decisions. An exciting collaboration across many labs. Enjoy reading!
www.biorxiv.org/content/10.1...
A multisensory, bidirectional, valence encoder guides behavioral decisions
A key function of the brain is to categorize sensory cues as repulsive or attractive and respond accordingly. While we have some understanding of how sensory information is processed in the sensory pe...
www.biorxiv.org
September 27, 2025 at 5:46 AM
Reposted by Thomas Frank
Ever wonder if there are spatial maps in the brain outside the hippocampal-entorhinal regions? In this preprint, we describe a novel spatial map in the orbitofrontal cortex (OFC) that preserves the topological arrangements and distance between locations. However, ...

www.biorxiv.org/cgi/content/...
The orbitofrontal cortex forms a context-generalized spatial schema that preserves topology and distance
Flexible and efficient navigation requires the brain to construct maps that are both topological, preserving the relationships between locations, and schematic, enabling generalization across environm...
www.biorxiv.org
September 26, 2025 at 9:53 AM
Reposted by Thomas Frank
Want to image the adult zebrafish brain? Here's a nifty design that I made with the help of a talented master's student, Corey Steinhauser.

Supporting files here!
morgridge.org/research/lab...
September 26, 2025 at 2:08 AM
Reposted by Thomas Frank
Check out this exciting study led by Anh-Tuan Trinh from our lab, where we investigated how thalamocortical-like circuits in the zebrafish pallium receive, represent, and integrate sensory information:
🔗 doi.org/10.1101/2025...
Hierarchical processing of sensory information across topographically organized thalamocortical-like circuits in the zebrafish brain
Thalamocortical projections contribute to the spatial organization and functional hierarchies of the mammalian cortex. Primary sensory cortices receive topographically segregated information from firs...
doi.org
September 16, 2025 at 12:54 PM
Reposted by Thomas Frank
We currently have open positions for PhD and Postdocs! Interested in learning fUS: please apply!
brainwidenetworks.uni-goettingen.de/open-positio...
September 11, 2025 at 8:14 PM
Exciting new results now published in Science: responses to visual objects are boosted in the brain's spatial navigation system. Read more in the thread below! Congratulations to all the authors!!
Thrilled to share that our work is now published in Science! ✨

We found a preference for visual objects in the mouse spatial navigation system where they dynamically refine head-direction coding. In short, objects boost our inner compass! 🧭

www.science.org/doi/10.1126/...

🧵1/
September 11, 2025 at 9:06 PM
Reposted by Thomas Frank
Physik studieren? Oder ein anderes Fach?

In Göttingen geht jetzt beides, mit dem "Bachelor Interdisziplinär", der Physik mit spannenden Disziplinen Eurer Wahl, wie z.B. Künstlicher Intelligenz, Philosophie, Neurowissenschaften, ... kombiniert.

www.uni-goettingen.de/de/studium/6...
Studiengang Physik interdisziplinär - Georg-August-Universität Göttingen
Webseiten der Georg-August-Universität Göttingen
www.uni-goettingen.de
July 19, 2025 at 5:30 AM
Reposted by Thomas Frank
A. James Hudpseth, who died 16 August at age 79, devoted his 50-year career to untangling how the ear converts sound into electrical signals.

By @callimcflurry.bsky.social

www.thetransmitter.org/hearing/reme...
Remembering A. James Hudspeth, hair cell explorer
Hudspeth, who died 16 August at age 79, devoted his 50-year career to untangling how the ear converts sound into electrical signals.
www.thetransmitter.org
August 22, 2025 at 5:54 PM
Reposted by Thomas Frank
🚨🚨🚨 Tol2kit announcement! We have rebuilt the wiki that was corrupted a few months ago! We’re in the process of also linking it to the original address. Please visit us here:
tol2kitkwan.genetics.utah.edu
Thank you for your patience!!
#zebrafish #transgenesis #plasmids #sharing
tol2kit for kwan lab
tol2kitkwan.genetics.utah.edu
July 7, 2025 at 6:01 PM
Reposted by Thomas Frank
New preprint on common algorithms and evolutionary inventions that may account for apparent idiosyncratic encoding of odor concentration across species millions of years apart by taking advantage of divisive normalization: steered by Yang Shen, @arkarupbanerjee.bsky.social and Saket Navlakha. 1/3
An evolutionarily conserved scheme for reformatting odor concentration in early olfactory circuits
Understanding how stimuli from the sensory periphery are progressively reformatted to yield useful representations is a fundamental challenge in neuroscience. In olfaction, assessing odor concentration is key for many behaviors, such as tracking and navigation. Initially, as odor concentration increases, the average response of first-order sensory neurons also increases. However, the average response of second-order neurons remains flat with increasing concentration – a transformation that is believed to help with concentration-invariant odor identification, but that seemingly discards concentration information before it could be sent to higher brain regions. By combining neural data analyses from diverse species with computational modeling, we propose strategies by which second-order neurons preserve concentration information, despite flat mean responses at the population level. We find that individual second-order neurons have diverse concentration response curves that are unique to each odorant — some neurons respond more with higher concentration and others respond less — and together this diversity generates distinct combinatorial representations for different concentrations. We show that this encoding scheme can be recapitulated using a circuit computation, called divisive normalization, and we derive sufficient conditions for this diversity to emerge. We then discuss two mechanisms (spike rate vs. timing based) by which higher order brain regions may decode odor concentration from the reformatted representations. Since vertebrate and invertebrate olfactory systems likely evolved independently, our findings suggest that evolution converged on similar algorithmic solutions despite stark differences in neural circuit architectures. Finally, in land vertebrates a parallel olfactory pathway has evolved whose second-order neurons do not exhibit such diverse response curves; rather neurons in this pathway represent concentration information in a more monotonic fashion on average, potentially allowing for easier odor localization and identification at the expense of increased energy use. ### Competing Interest Statement The authors have declared no competing interest.
doi.org
March 26, 2025 at 10:27 AM
Reposted by Thomas Frank
🔗 to original research: www.nature.com/articles/s42...
March 10, 2025 at 7:08 PM
Reposted by Thomas Frank
⚡️ Excited to introduce ZAPBench, our #ICLR2025 spotlight: The Zebrafish Activity Prediction Benchmark measures progress in predicting neural activity within an entire vertebrate brain (70k+ neurons!)

Explore interactive visualizations, datasets, code + paper: google-research.github.io/zapbench

🧠🧪
ZAPBench
ZAPBench evaluates how well different models can predict the activity of over 70,000 neurons in a novel larval zebrafish dataset.
google-research.github.io
March 4, 2025 at 3:22 PM
Reposted by Thomas Frank
New paper! We studied how inhibitory circuits shape the processing of olfactory information using a tight interplay between modeling and experiments. Collaboration between @fmiscience.bsky.social and @frankfishlab.bsky.social . doi.org/10.1016/j.ce...
Redirecting
doi.org
February 21, 2025 at 12:23 PM
Exciting opportunity! Strongly encourage to apply.
Have you ever wondered how memories are processed downstream of the #hippocampus and how this is affected by #Alzheimer's? We believe we may find some answers by riding all the way down the fornix to the mammillary body. Apply here for a fully-funded #PhD with us: ovgu.b-ite.careers/56yvk
December 2, 2024 at 3:26 PM
Reposted by Thomas Frank
🚨New(ish) preprint
In mice, visual objects are encoded in the navigation syst, not much in the visual cx, certainly because they are used for orientation.
This new version now includes cool comp work from @dlevenstein.bsky.social using @kenmiller.bsky.social's SSNs.

www.biorxiv.org/content/10.1...
Visual objects refine head direction coding
Animals use visual objects to guide navigation-related behaviors, from hunting prey, to escaping predators, to exploring the world. However, little is known about where visual objects are encoded in t...
www.biorxiv.org
December 2, 2024 at 3:00 PM