David Rosenberger
drosen285.bsky.social
David Rosenberger
@drosen285.bsky.social
Computational physical chemist. Currently Postdoc@BAM (Bundesanstalt für Materialforschung-und prüfung). Real Football and American Football Enthusiast
Reposted by David Rosenberger
"It is not a stretch to say that every pharmaceutical company now studying cancer, HIV-AIDS, COVID-19, and a host of other diseases has made use of Jorgensen’s water models."

As we all do, 45k citations and counting! 👏🏻👏🏻👏🏻

news.yale.edu/2025/11/18/d...
November 25, 2025 at 7:30 AM
Reposted by David Rosenberger
Our latest paper on the interpretation on Neural Network Potentials is now published on Nature Communications: nature.com/articles/s41.... Congratulations to Klara Bonneau, Jonas Lederer and all authors. In collaboration with Klaus-Robert Müller's group.
Peering inside the black box by learning the relevance of many-body functions in neural network potentials - Nature Communications
Machine-learned force fields are becoming increasingly popular but suffer from their “black-box” nature. Here the authors adapt explainable AI techniques to coarse-grained graph neural network potenti...
nature.com
November 10, 2025 at 4:28 PM
Reposted by David Rosenberger
A new preprint and two firsts:
Joana Bustamante's first first-author preprint in our group and us developing a model for thermal conductivity!

Feedback welcome!

arxiv.org/abs/2510.23133

#compchem
Thermal Transport in Ag8TS6 (T= Si, Ge, Sn) Argyrodites: An Integrated Experimental, Quantum-Chemical, and Computational Modelling Study
Argyrodite-type Ag-based sulfides combine exceptionally low lattice thermal and high ionic conductivity, making them promising candidates for thermoelectric and solid-state energy applications. In thi...
arxiv.org
October 28, 2025 at 7:48 AM
Reposted by David Rosenberger
We (@sobuelow.bsky.social) developed AF-CALVADOS to integrate AlphaFold and CALVADOS to simulate flexible multidomain proteins at scale

See preprint for:
— Ensembles of >12000 full-length human proteins
— Analysis of IDRs in >1500 TFs

📜 doi.org/10.1101/2025...
💾 github.com/KULL-Centre/...
October 20, 2025 at 11:26 AM
Reposted by David Rosenberger
Integrative modelling of biomolecular dynamics

Time-dependent and -resolved experiments combined with computation provide a view on molecular dynamics beyond that available from static, ensemble-averaged experiments

Review w @dariagusew.bsky.social & Carl G Henning Hansen
doi.org/10.48550/arX...
October 2, 2025 at 7:54 AM
Reposted by David Rosenberger
I am super excited to announce that we have a tenure-track faculty position in biophysics open in the Department of Physics at Carnegie Mellon! 🧪

Interfolio link: apply.interfolio.com/174360

PLEASE, share widely across the blue skies!

Let me briefly explain what we're looking for:

1/10
September 26, 2025 at 3:35 PM
Reposted by David Rosenberger
Apple now has a protein folding NN?...

arxiv.org/pdf/2509.18480
September 24, 2025 at 2:31 PM
Reposted by David Rosenberger
Die deutsche Nationalmannschaft aus der Irrelevanz zum Welt- und Europameister gemacht, dabei als Anführer immer dazu gelernt und gewachsen: Dennis Schröder ist sportartenübergreifend einer der größten deutschen Athleten ever. Punkt.
September 14, 2025 at 7:58 PM
Reposted by David Rosenberger
Who invented convolutional neural networks?
Who invented convolutional neural networks?
people.idsia.ch
September 2, 2025 at 4:50 PM
Reposted by David Rosenberger
Interested in predicting magnetism in transition metal compounds? We have written a paper on how to use exchange heuristics in such models. We also show limits of current theoretical approaches.
Please find our preprint here.
doi.org/10.26434/che...

#compchemsky
Can simple exchange heuristics guide us in predicting magnetic properties of solids?
A popular heuristic derived from the Kanamori-Goodenough-Anderson rules of superexchange connects bond angles and magnetism in certain transition metal compounds. We evaluate the fulfillment of this h...
doi.org
August 15, 2025 at 12:29 PM
Reposted by David Rosenberger
Our development of machine-learned transferable coarse-grained models in now on Nat Chem! doi.org/10.1038/s415...
I am so proud of my group for this work! Particularly first authors Nick Charron, Klara Bonneau, Aldo Pasos-Trejo, Andrea Guljas.
Navigating protein landscapes with a machine-learned transferable coarse-grained model - Nature Chemistry
The development of a universal protein coarse-grained model has been a long-standing challenge. A coarse-grained model with chemical transferability has now been developed by combining deep-learning m...
doi.org
July 18, 2025 at 10:45 AM
Reposted by David Rosenberger
The atomate2 paper is finally out: pubs.rsc.org/en/content/a...

Workflows for computational materials science that are ready to be used!!!

#compchem
pubs.rsc.org
July 1, 2025 at 9:09 PM
Reposted by David Rosenberger
🚀 After two+ years of intense research, we’re thrilled to introduce Skala — a scalable deep learning density functional that hits chemical accuracy on atomization energies and matches hybrid-level accuracy on main group chemistry — all at the cost of semi-local DFT ⚛️🔥🧪🧬
June 18, 2025 at 11:24 AM
Some will say yet another league title for Bayern, but they won it with two players with Tottenham DNA… must be the biggest accomplishment in modern football #fcb #miasanmia
May 4, 2025 at 5:52 PM
Reposted by David Rosenberger
AlphaFold is amazing but gives you static structures 🧊

In a fantastic teamwork, @mcagiada.bsky.social and @emilthomasen.bsky.social developed AF2χ to generate conformational ensembles representing side-chain dynamics using AF2 💃

Code: github.com/KULL-Centre/...
Colab: github.com/matteo-cagia...
April 17, 2025 at 7:11 PM
DFB Pokal, du geiler #BIEB04
April 1, 2025 at 8:47 PM
Reposted by David Rosenberger
How can we improve the synthesizability prediction of inorganic materials? In our new paper, Sasan Amariamir, me, and Philipp Benner suggest so-called co-training (i.e., using the power of two different model architectures)!

Just out in Digital Discovery:
doi.org/10.1039/D4DD...

#compchem
SynCoTrain: a dual classifier PU-learning framework for synthesizability prediction
Material discovery is a cornerstone of modern science, driving advancements in diverse disciplines from biomedical technology to climate solutions. Predicting synthesizability, a critical factor in re...
doi.org
March 28, 2025 at 6:28 PM
Reposted by David Rosenberger
CECAM school on automated ab initio calculations came to an end.

Nearly all teaching material including videos of our atomate2 school is already or will be online:

www.cecam.org/workshop-det...

#compchem

@virtualatoms.bsky.social @naikaakash.bsky.social and many more not on here 😀
www.cecam.org
March 21, 2025 at 8:40 AM
Das Wort zum Mittwoch.
Kompany-Ticker

40 Spiele
29 Siege
5 Remis
6 Niederlagen
110:38 Tore
#B04FCB

>> Und SECHS Halbzeiten gg Leverkusen ohne Gegentor.
March 11, 2025 at 10:08 PM
Reposted by David Rosenberger
Our paper on FIORA is now officially published in @naturecomms.bsky.social! 🔓Peer-reviewed and ready to shake up mass spec predictions. ⚗️🔨💻📈

Github: github.com/BAMeScience/...
Paper: www.nature.com/articles/s41...

Many thanks to everyone involved 🙌 #MachineLearning #MassSpec #Metabolomics #FIORA
FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events - Nature Communications
FIORA, an advanced graph neural network, enhances the simulation of tandem mass spectra by learning molecular bond-breaking patterns. The open-source algorithm generates high-quality reference spectra...
www.nature.com
March 11, 2025 at 9:35 AM
Reposted by David Rosenberger
#compchem New paper published in JCTC:
"Velocity Jumps for Molecular Dynamics"
pubs.acs.org/doi/10.1021/...
We introduce the Velocity Jumps approach, denoted as JUMP, a new class of Molecular dynamics integrators, replacing the Langevin dynamics. Amazing work by Nicolai Gouraud. #compchemsky
Velocity Jumps for Molecular Dynamics
We introduce the Velocity Jumps approach, denoted as JUMP, a new class of Molecular dynamics integrators, replacing the Langevin dynamics by a hybrid model combining a classical Langevin diffusion and a piecewise deterministic Markov process, where the expensive computation of long-range pairwise interactions is replaced by a resampling of the velocities at random times. This framework allows for an acceleration in the simulation speed while preserving sampling and dynamical properties such as the diffusion constant. It can also be integrated in classical multi-time-step methods, pushing further the computational speedup, while avoiding some of the resonance issues of the latter thanks to the random nature of jumps. The JUMP, JUMP-RESPA and JUMP-RESPA1 integrators have been implemented in the GPU-accelerated version of the Tinker-HP package and are shown to provide significantly enhanced performances compared to their BAOAB, BAOAB-RESPA and BAOAB-RESPA1 counterparts, respectively.
pubs.acs.org
March 7, 2025 at 6:50 AM
Reposted by David Rosenberger
🚨 Postdoc Opportunity #2 🚨

We are looking for candidates with a strong background in molecular dynamics simulations of membrane protein interactions to unravel the role of lipids in CD95 oligomerization and signaling!

Please apply by March 28!

#LipidTime @bzh-hd.bsky.social
March 6, 2025 at 3:43 PM
Excited to annouce that I‘m now working in the eSciene group at @bamresearch.bsky.social Looking forward to explore new frontiers in machine learning and materials.
March 3, 2025 at 8:02 PM
Reposted by David Rosenberger
Stand with UKRAINE! #standWithUkraine
February 28, 2025 at 9:16 PM
Reposted by David Rosenberger
Structural biology is in an era of dynamics & assemblies but turning raw experimental data into atomic models at scale remains challenging. @minhuanli.bsky.social and I present ROCKET🚀: an AlphaFold augmentation that integrates crystallographic and cryoEM/ET data with room for more! 1/14.
February 24, 2025 at 12:23 PM