Charles University Structural Bioinformatics Group
@cusbg.bsky.social
Research group at the intersection of structural bioinformatics 🧬 and machine learning 🤖. Developing http://prankweb.cz, http://apoholo.cz, https://rnacentral.org/r2dt
Lab: bioinformatics.cuni.cz/cusbg
Heads: @davhox.bsky.social & @majek.bsky.social
Lab: bioinformatics.cuni.cz/cusbg
Heads: @davhox.bsky.social & @majek.bsky.social
Reposted by Charles University Structural Bioinformatics Group
🌿 The Botanical Garden of Charles University’s Faculty of Science turns 250! Founded in 1775, it is one of Central Europe’s oldest university gardens.
Join us for a special anniversary program 15–21 Sept 2025. 🎉
@unikarlova.cuni.cz @botanickazahradauk.bsky.social
Join us for a special anniversary program 15–21 Sept 2025. 🎉
@unikarlova.cuni.cz @botanickazahradauk.bsky.social
September 16, 2025 at 8:22 AM
🌿 The Botanical Garden of Charles University’s Faculty of Science turns 250! Founded in 1775, it is one of Central Europe’s oldest university gardens.
Join us for a special anniversary program 15–21 Sept 2025. 🎉
@unikarlova.cuni.cz @botanickazahradauk.bsky.social
Join us for a special anniversary program 15–21 Sept 2025. 🎉
@unikarlova.cuni.cz @botanickazahradauk.bsky.social
Reposted by Charles University Structural Bioinformatics Group
September 16, 2025 at 4:48 PM
Reposted by Charles University Structural Bioinformatics Group
Kickstarting our symposium “Protein Annotations in the age of AI” at UCL!
September 16, 2025 at 10:19 AM
Kickstarting our symposium “Protein Annotations in the age of AI” at UCL!
Reposted by Charles University Structural Bioinformatics Group
We opened Day 2 of our #CECAM flagship workshop in Prague with the CECAM director Andrea Cavalli, highlighting steered #MD, dynamical docking & the complexity of binding energetics, and the challenges ahead. 🚀
#CECAMinPrague @iocbprague.bsky.social @cecamevents.bsky.social @iocbtech.bsky.social
#CECAMinPrague @iocbprague.bsky.social @cecamevents.bsky.social @iocbtech.bsky.social
September 9, 2025 at 11:21 AM
We opened Day 2 of our #CECAM flagship workshop in Prague with the CECAM director Andrea Cavalli, highlighting steered #MD, dynamical docking & the complexity of binding energetics, and the challenges ahead. 🚀
#CECAMinPrague @iocbprague.bsky.social @cecamevents.bsky.social @iocbtech.bsky.social
#CECAMinPrague @iocbprague.bsky.social @cecamevents.bsky.social @iocbtech.bsky.social
Reposted by Charles University Structural Bioinformatics Group
CATH turns 30 years old 🥳
They celebrate with a Symposium on September 16th! I'll be presenting our work: "An Atlas of Energetic Evolutionary Constraints Across Protein Families"
Unbelievable selection of speakers! So if you are around London, you can register to attend:
tinyurl.com/2pnk8hj5
They celebrate with a Symposium on September 16th! I'll be presenting our work: "An Atlas of Energetic Evolutionary Constraints Across Protein Families"
Unbelievable selection of speakers! So if you are around London, you can register to attend:
tinyurl.com/2pnk8hj5
August 23, 2025 at 3:08 PM
CATH turns 30 years old 🥳
They celebrate with a Symposium on September 16th! I'll be presenting our work: "An Atlas of Energetic Evolutionary Constraints Across Protein Families"
Unbelievable selection of speakers! So if you are around London, you can register to attend:
tinyurl.com/2pnk8hj5
They celebrate with a Symposium on September 16th! I'll be presenting our work: "An Atlas of Energetic Evolutionary Constraints Across Protein Families"
Unbelievable selection of speakers! So if you are around London, you can register to attend:
tinyurl.com/2pnk8hj5
Reposted by Charles University Structural Bioinformatics Group
The first day of our bioML symposium at @iocbprague.bsky.social went very well. It is amazing to see how fast this field is moving forward. Thanks to everyone for the fantastic talks! 🤖🧬
August 21, 2025 at 8:22 PM
The first day of our bioML symposium at @iocbprague.bsky.social went very well. It is amazing to see how fast this field is moving forward. Thanks to everyone for the fantastic talks! 🤖🧬
Reposted by Charles University Structural Bioinformatics Group
🚀 GPU-accelerated docking to P2Rank-predicted pockets
I'm excited to share our new preprint: PocketVina — a fast, scalable, and accurate multi-pocket molecular docking method.
Docking remains essential in early-stage drug discovery, but recent deep learning–based approaches still face limitations in generating...
Thread - (1/n)
Docking remains essential in early-stage drug discovery, but recent deep learning–based approaches still face limitations in generating...
Thread - (1/n)
June 27, 2025 at 7:25 AM
🚀 GPU-accelerated docking to P2Rank-predicted pockets
Reposted by Charles University Structural Bioinformatics Group
Fantastic to work with so many talented people! today at departmental conference of cell biology department of @sciencecharles.bsky.social . Many thanks to our guests from Israel for joining us and sharing their results and time with us
June 19, 2025 at 9:06 AM
Fantastic to work with so many talented people! today at departmental conference of cell biology department of @sciencecharles.bsky.social . Many thanks to our guests from Israel for joining us and sharing their results and time with us
Congratulations! 🎉
On personal #Alphafoldology notice - I’ve got my Professorship in Biomolecular Chemistry and Structural Biology today.
June 16, 2025 at 7:25 PM
Congratulations! 🎉
Reposted by Charles University Structural Bioinformatics Group
🚀 Our paper on the updated PrankWeb, a web app for protein binding site prediction using P2Rank, is out in
@narjournal.bsky.social. Now with docking integration!
👨💻 Try it: prankweb.cz
📄 Paper: doi.org/10.1093/nar/...
💻 GitHub: github.com/cusbg/prankweb
Developed at @cusbg.bsky.social
@narjournal.bsky.social. Now with docking integration!
👨💻 Try it: prankweb.cz
📄 Paper: doi.org/10.1093/nar/...
💻 GitHub: github.com/cusbg/prankweb
Developed at @cusbg.bsky.social
June 10, 2025 at 3:09 PM
🚀 Our paper on the updated PrankWeb, a web app for protein binding site prediction using P2Rank, is out in
@narjournal.bsky.social. Now with docking integration!
👨💻 Try it: prankweb.cz
📄 Paper: doi.org/10.1093/nar/...
💻 GitHub: github.com/cusbg/prankweb
Developed at @cusbg.bsky.social
@narjournal.bsky.social. Now with docking integration!
👨💻 Try it: prankweb.cz
📄 Paper: doi.org/10.1093/nar/...
💻 GitHub: github.com/cusbg/prankweb
Developed at @cusbg.bsky.social
Reposted by Charles University Structural Bioinformatics Group
I am #exhilarated to share that our new paper "LIGYSIS-web: a resource for the analysis of protein-ligand binding sites" is now published in @narjournal.bsky.social! After almost two years of development and more than 600 commits, LIGYSIS-web is out!
📜 : tinyurl.com/utges-LIGYSI...
📜 : tinyurl.com/utges-LIGYSI...
May 19, 2025 at 10:37 AM
I am #exhilarated to share that our new paper "LIGYSIS-web: a resource for the analysis of protein-ligand binding sites" is now published in @narjournal.bsky.social! After almost two years of development and more than 600 commits, LIGYSIS-web is out!
📜 : tinyurl.com/utges-LIGYSI...
📜 : tinyurl.com/utges-LIGYSI...
Reposted by Charles University Structural Bioinformatics Group
Join us for the next #Bioinformatics seminar hosted by
@sciencecharles.bsky.social and @mff.unikarlova.cuni.cz. Nora Martin from CRG : “How does the structure of a genotype-phenotype map shape variation and evolutionary processes?”.
📅 Wed, Apr 30
🕕 17:20
bioinformatics.cuni.cz/seminar
@sciencecharles.bsky.social and @mff.unikarlova.cuni.cz. Nora Martin from CRG : “How does the structure of a genotype-phenotype map shape variation and evolutionary processes?”.
📅 Wed, Apr 30
🕕 17:20
bioinformatics.cuni.cz/seminar
Binformatics seminar
Petr Daněček David Hoksza Marian Novotný
bioinformatics.cuni.cz
April 28, 2025 at 3:59 PM
Join us for the next #Bioinformatics seminar hosted by
@sciencecharles.bsky.social and @mff.unikarlova.cuni.cz. Nora Martin from CRG : “How does the structure of a genotype-phenotype map shape variation and evolutionary processes?”.
📅 Wed, Apr 30
🕕 17:20
bioinformatics.cuni.cz/seminar
@sciencecharles.bsky.social and @mff.unikarlova.cuni.cz. Nora Martin from CRG : “How does the structure of a genotype-phenotype map shape variation and evolutionary processes?”.
📅 Wed, Apr 30
🕕 17:20
bioinformatics.cuni.cz/seminar
Reposted by Charles University Structural Bioinformatics Group
Back in July 2023 we organized a small bioML symposium at @iocbprague.bsky.social, and it turned out to be a very pleasant and successful event. This summer we are following up with a great line-up of speakers. Please register for free, deadline May 30. tinyurl.com/bioMLPrague25
April 11, 2025 at 11:34 AM
Back in July 2023 we organized a small bioML symposium at @iocbprague.bsky.social, and it turned out to be a very pleasant and successful event. This summer we are following up with a great line-up of speakers. Please register for free, deadline May 30. tinyurl.com/bioMLPrague25
Reposted by Charles University Structural Bioinformatics Group
3DSIG has now joined BlueSky!! Follow us there to keep building a strong community around the fields of Structural Bioinformatics and Computational Biophysics!
💻Hello world! We are 3D-SIG: Structural Bioinformatics and Computational Biophysics, track of the International Society for Computational Biology (ISCB) @iscb.bsky.social 🙌
April 10, 2025 at 10:06 PM
3DSIG has now joined BlueSky!! Follow us there to keep building a strong community around the fields of Structural Bioinformatics and Computational Biophysics!
Reposted by Charles University Structural Bioinformatics Group
A new preprint from our lab at @fchupol.bsky.social
Pathogenicity Patterns in Cytochrome P450 Family https://www.biorxiv.org/content/10.1101/2025.03.30.646180v1
April 4, 2025 at 10:55 AM
A new preprint from our lab at @fchupol.bsky.social
Reposted by Charles University Structural Bioinformatics Group
🧪🇨🇿 A reminder: there’s a starter pack with Czech science institutions and research labs. A bunch of new ones have joined Bluesky lately -- and some, like Charles University (@charlesuni.cuni.cz), have fully made the move here from the other place.
A starter pack with science institutions and research labs in Czech Republic.
Let us know what is missing!
go.bsky.app/Bjam2aQ
Let us know what is missing!
go.bsky.app/Bjam2aQ
April 3, 2025 at 11:00 AM
🧪🇨🇿 A reminder: there’s a starter pack with Czech science institutions and research labs. A bunch of new ones have joined Bluesky lately -- and some, like Charles University (@charlesuni.cuni.cz), have fully made the move here from the other place.
Reposted by Charles University Structural Bioinformatics Group
March 22, 2025 at 7:54 AM
Reposted by Charles University Structural Bioinformatics Group
Joe et al. have a fresh preprint on the MARTINI simulations of the #ribosome.
arxiv.org/abs/2503.21357
arxiv.org/abs/2503.21357
now we will move with bacterial ribosome by coarse grain simulations with Josef Cikhart from @mhko.bsky.social group at @vschtpraha.bsky.social
March 28, 2025 at 9:28 AM
Joe et al. have a fresh preprint on the MARTINI simulations of the #ribosome.
arxiv.org/abs/2503.21357
arxiv.org/abs/2503.21357
Reposted by Charles University Structural Bioinformatics Group
we continue 1st @elixircz.bsky.social PhD conference with keynote by Martin Čech from @iocbprague.bsky.social and Cesnet on usegalaxy.cz
March 28, 2025 at 8:15 AM
we continue 1st @elixircz.bsky.social PhD conference with keynote by Martin Čech from @iocbprague.bsky.social and Cesnet on usegalaxy.cz
Reposted by Charles University Structural Bioinformatics Group
1st @elixircz.bsky.social PhD conference at Telč on 27-28th March 2025 superthread.
March 27, 2025 at 3:28 PM
1st @elixircz.bsky.social PhD conference at Telč on 27-28th March 2025 superthread.
Reposted by Charles University Structural Bioinformatics Group
🎉 #ELIXIRCZ celebrated 10 transformative years in life sciences! Thanks, everyone, for celebrating with us!
🥂 Cheers to a decade of growth & many more to come! #Science #Innovation #DataScience @elixir-europe.org
www.elixir-czech.cz/news/10-year...
🥂 Cheers to a decade of growth & many more to come! #Science #Innovation #DataScience @elixir-europe.org
www.elixir-czech.cz/news/10-year...
March 25, 2025 at 1:30 PM
🎉 #ELIXIRCZ celebrated 10 transformative years in life sciences! Thanks, everyone, for celebrating with us!
🥂 Cheers to a decade of growth & many more to come! #Science #Innovation #DataScience @elixir-europe.org
www.elixir-czech.cz/news/10-year...
🥂 Cheers to a decade of growth & many more to come! #Science #Innovation #DataScience @elixir-europe.org
www.elixir-czech.cz/news/10-year...
Reposted by Charles University Structural Bioinformatics Group
we continue 1st @elixircz.bsky.social PhD conference (I should made a hashtag - too late) with student presentations
March 27, 2025 at 1:16 PM
we continue 1st @elixircz.bsky.social PhD conference (I should made a hashtag - too late) with student presentations
Reposted by Charles University Structural Bioinformatics Group
We are grateful and fortunate to have Sameer Velankar, the head of @pdbeurope.bsky.social, to start first ever @elixircz.bsky.social phd conference. Thank you RSJ and @elixircz.bsky.social for general support!
March 27, 2025 at 12:19 PM
We are grateful and fortunate to have Sameer Velankar, the head of @pdbeurope.bsky.social, to start first ever @elixircz.bsky.social phd conference. Thank you RSJ and @elixircz.bsky.social for general support!
Reposted by Charles University Structural Bioinformatics Group
we continue with keynote lecture by Sameer Velankar from @pdbeurope.bsky.social
March 27, 2025 at 12:13 PM
we continue with keynote lecture by Sameer Velankar from @pdbeurope.bsky.social