Anthony M. Bonacolta
@ambonacolta.bsky.social
Postdoctoral fellow in the Keeling Lab @ UBC studying marine protistan symbionts. Previously: del Campo Lab & Coral Reef Futures Lab 🐠🪸🌊🧬 He/Him 🏳️🌈
Reposted by Anthony M. Bonacolta
🎉 There are currently 4 opportunities to join the Holt lab in beautiful Bath! 🎉
If you're interested in protists, parasites, and/or biodiversity then please check out our website:
theholtlab.com/posts/ln5-21...
🚨 Deadlines vary between project.
✉️ Please reach out if you have any questions!
If you're interested in protists, parasites, and/or biodiversity then please check out our website:
theholtlab.com/posts/ln5-21...
🚨 Deadlines vary between project.
✉️ Please reach out if you have any questions!
November 24, 2025 at 2:30 PM
🎉 There are currently 4 opportunities to join the Holt lab in beautiful Bath! 🎉
If you're interested in protists, parasites, and/or biodiversity then please check out our website:
theholtlab.com/posts/ln5-21...
🚨 Deadlines vary between project.
✉️ Please reach out if you have any questions!
If you're interested in protists, parasites, and/or biodiversity then please check out our website:
theholtlab.com/posts/ln5-21...
🚨 Deadlines vary between project.
✉️ Please reach out if you have any questions!
Reposted by Anthony M. Bonacolta
AI slop gracing the cover of Royal Society B. Not only in AI yellow but scientifically nonsensical. Come on. I'm certain human photographs and artworks were ignored to platform ... this.
November 18, 2025 at 10:49 AM
AI slop gracing the cover of Royal Society B. Not only in AI yellow but scientifically nonsensical. Come on. I'm certain human photographs and artworks were ignored to platform ... this.
Reposted by Anthony M. Bonacolta
📢 rphylopic 📦 1.6.0 is now on #CRAN!
- resolve_phylopic() retries failing API calls 🔄
- geom_phylopic()/add_phylopic() work with ggplot2 4.0.0 🪛
- add_phylopic_tree() wraps add_phylopic() for base R trees
- get_phylopic() can get og source files from #PhyloPic 👤
rphylopic.palaeoverse.org
#Rstats
- resolve_phylopic() retries failing API calls 🔄
- geom_phylopic()/add_phylopic() work with ggplot2 4.0.0 🪛
- add_phylopic_tree() wraps add_phylopic() for base R trees
- get_phylopic() can get og source files from #PhyloPic 👤
rphylopic.palaeoverse.org
#Rstats
November 18, 2025 at 3:30 PM
📢 rphylopic 📦 1.6.0 is now on #CRAN!
- resolve_phylopic() retries failing API calls 🔄
- geom_phylopic()/add_phylopic() work with ggplot2 4.0.0 🪛
- add_phylopic_tree() wraps add_phylopic() for base R trees
- get_phylopic() can get og source files from #PhyloPic 👤
rphylopic.palaeoverse.org
#Rstats
- resolve_phylopic() retries failing API calls 🔄
- geom_phylopic()/add_phylopic() work with ggplot2 4.0.0 🪛
- add_phylopic_tree() wraps add_phylopic() for base R trees
- get_phylopic() can get og source files from #PhyloPic 👤
rphylopic.palaeoverse.org
#Rstats
Reposted by Anthony M. Bonacolta
My first #PhD dissertation chapter was just published in Ecology and Evolution! We characterized the gene expression patterns of staghorn and knobby brain corals in response to thermal preconditioning. read our #openaccess paper here! onlinelibrary.wiley.com/doi/10.1002/...
November 14, 2025 at 9:48 PM
My first #PhD dissertation chapter was just published in Ecology and Evolution! We characterized the gene expression patterns of staghorn and knobby brain corals in response to thermal preconditioning. read our #openaccess paper here! onlinelibrary.wiley.com/doi/10.1002/...
Reposted by Anthony M. Bonacolta
The Lariviere lab at UMiami is recruiting PhD students! Incoming students will join us in studying host-microbe interactions in the honey bee gut, using molecular and genetic approaches. Please see the attached flyer for more details.
#Symbiosis #SymbioSky #MicroSky #PhDOpportunity #AcademicJobs
#Symbiosis #SymbioSky #MicroSky #PhDOpportunity #AcademicJobs
November 13, 2025 at 3:14 PM
The Lariviere lab at UMiami is recruiting PhD students! Incoming students will join us in studying host-microbe interactions in the honey bee gut, using molecular and genetic approaches. Please see the attached flyer for more details.
#Symbiosis #SymbioSky #MicroSky #PhDOpportunity #AcademicJobs
#Symbiosis #SymbioSky #MicroSky #PhDOpportunity #AcademicJobs
Reposted by Anthony M. Bonacolta
NEW pub in @science.org 🥳
Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life?
For over 15 years, #phylogenomic studies have been divided.
We provide new evidence suggesting that...
🔗: www.science.org/doi/10.1126/...
Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life?
For over 15 years, #phylogenomic studies have been divided.
We provide new evidence suggesting that...
🔗: www.science.org/doi/10.1126/...
November 13, 2025 at 8:34 PM
NEW pub in @science.org 🥳
Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life?
For over 15 years, #phylogenomic studies have been divided.
We provide new evidence suggesting that...
🔗: www.science.org/doi/10.1126/...
Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life?
For over 15 years, #phylogenomic studies have been divided.
We provide new evidence suggesting that...
🔗: www.science.org/doi/10.1126/...
Reposted by Anthony M. Bonacolta
Here, we show that deep below, corals and feather stars don’t just share space – they share microbes. Endozoicomonadaceae + Nitrosopumilaceae inhabit both hosts in a “promiscuous” symbiosis that may fuel nitrogen cycling in the deep sea.
doi.org/10.1186/s401... 🌊🪸🧪 #Bioinformatics 🧬💻 #SymbioSky
doi.org/10.1186/s401... 🌊🪸🧪 #Bioinformatics 🧬💻 #SymbioSky
November 13, 2025 at 6:11 AM
Here, we show that deep below, corals and feather stars don’t just share space – they share microbes. Endozoicomonadaceae + Nitrosopumilaceae inhabit both hosts in a “promiscuous” symbiosis that may fuel nitrogen cycling in the deep sea.
doi.org/10.1186/s401... 🌊🪸🧪 #Bioinformatics 🧬💻 #SymbioSky
doi.org/10.1186/s401... 🌊🪸🧪 #Bioinformatics 🧬💻 #SymbioSky
Reposted by Anthony M. Bonacolta
Our paper on the #genome of the Trebouxia #photobiont from Xanthoria is now out in @newphyt.bsky.social! Check below for a near-chromosome level assembly, secretome analysis, evidence of ancient HGT, and transcriptomic comparison of the alga in symbiosis and in pure culture
doi.org/10.1111/nph.70728
doi.org/10.1111/nph.70728
November 12, 2025 at 3:46 PM
Our paper on the #genome of the Trebouxia #photobiont from Xanthoria is now out in @newphyt.bsky.social! Check below for a near-chromosome level assembly, secretome analysis, evidence of ancient HGT, and transcriptomic comparison of the alga in symbiosis and in pure culture
doi.org/10.1111/nph.70728
doi.org/10.1111/nph.70728
Reposted by Anthony M. Bonacolta
We are looking for a PhD student to work on an exciting plastid endosymbiosis in microbial eukaryotes. This position involves sampling, exciting microscopy such as CARDFISH, ExM and FIBSEM, single-cell transcriptomics and more. #protistsonsky 1/2
November 12, 2025 at 9:50 AM
We are looking for a PhD student to work on an exciting plastid endosymbiosis in microbial eukaryotes. This position involves sampling, exciting microscopy such as CARDFISH, ExM and FIBSEM, single-cell transcriptomics and more. #protistsonsky 1/2
Reposted by Anthony M. Bonacolta
Excited to share our new paper introducing BEREN, a tool for identifying giant and other dsDNA viruses from metagenomic data — now online!
Beren improves viral genome recovery and expands our view of the virosphere.
academic.oup.com/bioinformati...
Beren improves viral genome recovery and expands our view of the virosphere.
academic.oup.com/bioinformati...
BEREN: A bioinformatic tool for recovering Giant viruses, Polinton-like Viruses, and Virophages in metagenomic data
AbstractMotivation. Viruses in the kingdom Bamfordvirae, specifically giant viruses (NCLDVs) in the phylum Nucleocytoviricota and smaller members in the Pr
academic.oup.com
November 8, 2025 at 6:41 PM
Excited to share our new paper introducing BEREN, a tool for identifying giant and other dsDNA viruses from metagenomic data — now online!
Beren improves viral genome recovery and expands our view of the virosphere.
academic.oup.com/bioinformati...
Beren improves viral genome recovery and expands our view of the virosphere.
academic.oup.com/bioinformati...
Reposted by Anthony M. Bonacolta
Oligonucleotide design meets big data:
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
November 7, 2025 at 12:54 PM
Oligonucleotide design meets big data:
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
We present oligoN-design, a simple, reproducible and versatile open-source tool to design specific primers and probes directly from large environmental DNA datasets.
🔗 DOI: doi.org/10.1101/2025...
👉 github.com/MiguelMSandi...
Reposted by Anthony M. Bonacolta
🥶Our GW4+ PhD project exploring polar protist diversity is accepting applications!🥶
With @tweethinking.bsky.social (@uniofbath.bsky.social) and Melody Clark (@bas.ac.uk), you will uncover the ecological roles, evolutionary histories, and environmental adaptions of polar protists!
Interested? 👀
With @tweethinking.bsky.social (@uniofbath.bsky.social) and Melody Clark (@bas.ac.uk), you will uncover the ecological roles, evolutionary histories, and environmental adaptions of polar protists!
Interested? 👀
GW4+ DLTP PhD Project: Ecological and Evolutionary Insights from Polar Protists at University of Bath on FindAPhD.com
PhD Project - GW4+ DLTP PhD Project: Ecological and Evolutionary Insights from Polar Protists at University of Bath, listed on FindAPhD.com
www.findaphd.com
November 7, 2025 at 3:37 PM
🥶Our GW4+ PhD project exploring polar protist diversity is accepting applications!🥶
With @tweethinking.bsky.social (@uniofbath.bsky.social) and Melody Clark (@bas.ac.uk), you will uncover the ecological roles, evolutionary histories, and environmental adaptions of polar protists!
Interested? 👀
With @tweethinking.bsky.social (@uniofbath.bsky.social) and Melody Clark (@bas.ac.uk), you will uncover the ecological roles, evolutionary histories, and environmental adaptions of polar protists!
Interested? 👀
Reposted by Anthony M. Bonacolta
We have a great PhD project supported by SWBio Doctoral Training Partnership at @uniofbath.bsky.social for 2026!
Come and apply cutting-edge sequencing approaches to tackle animal health in aquaculture! We'll be characterising protist parasites to learn more about their interactions and evolution
🐟
Come and apply cutting-edge sequencing approaches to tackle animal health in aquaculture! We'll be characterising protist parasites to learn more about their interactions and evolution
🐟
SWBio DTP PhD Project: Decoding Protist Parasites in Aquaculture with Single-Cell Sequencing at University of Bath on FindAPhD.com
PhD Project - SWBio DTP PhD Project: Decoding Protist Parasites in Aquaculture with Single-Cell Sequencing at University of Bath, listed on FindAPhD.com
www.findaphd.com
November 5, 2025 at 12:04 PM
We have a great PhD project supported by SWBio Doctoral Training Partnership at @uniofbath.bsky.social for 2026!
Come and apply cutting-edge sequencing approaches to tackle animal health in aquaculture! We'll be characterising protist parasites to learn more about their interactions and evolution
🐟
Come and apply cutting-edge sequencing approaches to tackle animal health in aquaculture! We'll be characterising protist parasites to learn more about their interactions and evolution
🐟
Reposted by Anthony M. Bonacolta
annoSnake: a Snakemake workflow for taxonomic and functional annotation of metagenomes and metagenome-assembled genomes (MAGs) www.biorxiv.org/content/10.1... #jcampubs
November 5, 2025 at 4:28 PM
annoSnake: a Snakemake workflow for taxonomic and functional annotation of metagenomes and metagenome-assembled genomes (MAGs) www.biorxiv.org/content/10.1... #jcampubs
Reposted by Anthony M. Bonacolta
Please join us next week for the second iteration of the DinoSphere Seminars! This time our two speakers will talk about host-associated dinoflagellates and any challenges they might have encountered when working with them. All current and future friends of dinoflagellates welcome!
#ProtistsOnSky
#ProtistsOnSky
We’re back with the next DinoSphere Online Seminar!
Join us on Nov 4th, we're hosting:
Edmée Royen (ULiège) - Symbiodinium
Nicolas dos Santos Pacheco (Cambridge) - Perkinsids
📅 Tue, Nov 4 - 4 PM CET/3 PM GMT
💻 Zoom link: sites.google.com/view/dinosphere
Please spread the word!
#protistonsky
Join us on Nov 4th, we're hosting:
Edmée Royen (ULiège) - Symbiodinium
Nicolas dos Santos Pacheco (Cambridge) - Perkinsids
📅 Tue, Nov 4 - 4 PM CET/3 PM GMT
💻 Zoom link: sites.google.com/view/dinosphere
Please spread the word!
#protistonsky
October 29, 2025 at 9:19 AM
Please join us next week for the second iteration of the DinoSphere Seminars! This time our two speakers will talk about host-associated dinoflagellates and any challenges they might have encountered when working with them. All current and future friends of dinoflagellates welcome!
#ProtistsOnSky
#ProtistsOnSky
Reposted by Anthony M. Bonacolta
Python was awarded a funding grant, funding grant asked Python foundation to remove all diversity and inclusion initiatives they have.
Python foundation said no and rejected the grant.
If you use Python, send a few dollars to the charity to keep it going. I’m pushing a dono on behalf of ScamGuard.
Python foundation said no and rejected the grant.
If you use Python, send a few dollars to the charity to keep it going. I’m pushing a dono on behalf of ScamGuard.
Please read our statement, share it with your networks, and support us if you can. www.python.org/sponsors/app... psfmember.org/civicrm/cont...
October 27, 2025 at 4:11 PM
Python was awarded a funding grant, funding grant asked Python foundation to remove all diversity and inclusion initiatives they have.
Python foundation said no and rejected the grant.
If you use Python, send a few dollars to the charity to keep it going. I’m pushing a dono on behalf of ScamGuard.
Python foundation said no and rejected the grant.
If you use Python, send a few dollars to the charity to keep it going. I’m pushing a dono on behalf of ScamGuard.
😢 Heat-driven functional extinction of Caribbean Acropora corals from Florida’s Coral Reef | Science www.science.org/doi/10.1126/...
Heat-driven functional extinction of Caribbean Acropora corals from Florida’s Coral Reef
In 2023, a record-setting marine heat wave triggered the ninth mass coral bleaching event on Florida’s Coral Reef (FCR). We examined spatial patterns of heat exposure along the ~560-kilometer length o...
www.science.org
October 24, 2025 at 1:32 AM
😢 Heat-driven functional extinction of Caribbean Acropora corals from Florida’s Coral Reef | Science www.science.org/doi/10.1126/...
Reposted by Anthony M. Bonacolta
#Microsporidia are #parasites of growing importance. @amjadkhalaf.bsky.social @mblaxter.bsky.social @marakat.bsky.social &co present 40 new genomes from #DarwinTreeofLife sequencing of their arthropod hosts, revealing insights into #tetraploidy & #reproduction @plosbiology.org 🧪 plos.io/48HsAQJ
October 22, 2025 at 4:26 PM
#Microsporidia are #parasites of growing importance. @amjadkhalaf.bsky.social @mblaxter.bsky.social @marakat.bsky.social &co present 40 new genomes from #DarwinTreeofLife sequencing of their arthropod hosts, revealing insights into #tetraploidy & #reproduction @plosbiology.org 🧪 plos.io/48HsAQJ
They should invent a phone that takes good pictures of fall foliage 🍁
October 21, 2025 at 11:22 PM
They should invent a phone that takes good pictures of fall foliage 🍁
Reposted by Anthony M. Bonacolta
Lunch today halfway around the world in Hangzhou and met a new asst professor who was very thankful for this resource. Please help out folks like them and other early career scientists with examples of job apps. Submit yours!
github.com/RILAB/statem...
github.com/RILAB/statem...
GitHub - RILAB/statements: Successful Job Applications and Grants
Successful Job Applications and Grants. Contribute to RILAB/statements development by creating an account on GitHub.
github.com
October 21, 2025 at 6:55 AM
Lunch today halfway around the world in Hangzhou and met a new asst professor who was very thankful for this resource. Please help out folks like them and other early career scientists with examples of job apps. Submit yours!
github.com/RILAB/statem...
github.com/RILAB/statem...
Microbial outreach at Science World! Thanks Lilith South for organizing 🦠 🔬
October 20, 2025 at 12:59 AM
Microbial outreach at Science World! Thanks Lilith South for organizing 🦠 🔬
Reposted by Anthony M. Bonacolta
We have recently shown the large potential of organellar genome-resolved metagenomics by assembling 100s of new marine plastid MAGs (ptMAGs), including revealing the new deep-branching algal group leptophytes: www.biorxiv.org/content/10.1...
New deep-branching environmental plastid genomes on the algal tree of life
Marine algae support the entire ocean ecosystem and greatly impact planetary biology. The availability of algae in culture poorly represents their large environmental diversity, and we still have a li...
www.biorxiv.org
October 17, 2025 at 7:33 AM
We have recently shown the large potential of organellar genome-resolved metagenomics by assembling 100s of new marine plastid MAGs (ptMAGs), including revealing the new deep-branching algal group leptophytes: www.biorxiv.org/content/10.1...
Reposted by Anthony M. Bonacolta
Ever wondered how single-celled predators in soil boost plant health?
🧬 Protists don't just eat bacteria -they team up with them to shape the rhizosphere.
📈 Auxin isn't just a plant hormone -it's an interkingdom signal influencing microbial and protist life.
🌱 Read: academic.oup.com/ismej/advanc...
🧬 Protists don't just eat bacteria -they team up with them to shape the rhizosphere.
📈 Auxin isn't just a plant hormone -it's an interkingdom signal influencing microbial and protist life.
🌱 Read: academic.oup.com/ismej/advanc...
Diverse soil protists show auxin regulated growth in partnership with auxin-producing bacteria
Abstract. Predatory protists are single-cell eukaryotic organisms capable of hunting and ingesting bacteria and other microorganisms, which are thought to
academic.oup.com
October 16, 2025 at 2:35 PM
Ever wondered how single-celled predators in soil boost plant health?
🧬 Protists don't just eat bacteria -they team up with them to shape the rhizosphere.
📈 Auxin isn't just a plant hormone -it's an interkingdom signal influencing microbial and protist life.
🌱 Read: academic.oup.com/ismej/advanc...
🧬 Protists don't just eat bacteria -they team up with them to shape the rhizosphere.
📈 Auxin isn't just a plant hormone -it's an interkingdom signal influencing microbial and protist life.
🌱 Read: academic.oup.com/ismej/advanc...
Reposted by Anthony M. Bonacolta
We also reconstruct the evolution of the algal-hosting cell type gene expression program (see @xgrau.bsky.social's beautiful summary figure below!)
October 15, 2025 at 8:00 PM
We also reconstruct the evolution of the algal-hosting cell type gene expression program (see @xgrau.bsky.social's beautiful summary figure below!)