Sorek Lab
soreklab.bsky.social
Sorek Lab
@soreklab.bsky.social
The Sorek Lab
Weizmann Institute of Science, Israel

https://www.weizmann.ac.il/molgen/Sorek/
Reposted by Sorek Lab
Exciting chemsky work out First Release in @science.org from @gracegdhan.bsky.social and collaborators, scrunching up pyrimidones so tight with UV light that the strain release can boil water!

www.science.org/doi/10.1126/...
Molecular solar thermal energy storage in Dewar pyrimidone beyond 1.6 MJ/kg
Storing sunlight in a compact and rechargeable form remains a central challenge for solar energy utilization. Molecular solar thermal (MOST) energy storage systems, which harness photon energy and rel...
www.science.org
February 12, 2026 at 7:34 PM
Reposted by Sorek Lab
Abstract submission is now OPEN for the 2026 Symposium on the Immune System of Bacteria!

sisb2026.rockefeller.edu
🗓 May 5–7, 2026
📍 Rockefeller University, New York City
⏰ Abstract deadline: March 16, 2026

Attendance will be capped, be sure to register early and secure your spot.

See you in NYC!
SISB2026
sisb2026.rockefeller.edu
February 11, 2026 at 2:05 PM
Reposted by Sorek Lab
Molecular basis for anti-jumbo phage #immunity by AVAST type 5.

Avs5 detects an early jumbo‑phage activator and halts infection by rapidly hydrolyzing NAD+.

www.sciencedirect.com/science/arti... #phage #bacteriophage #MicroSky
February 7, 2026 at 7:26 PM
Reposted by Sorek Lab
Aude Bernheim @audeber.bsky.social and Eugene Koonin discuss one of most interesting questions in the field connecting bacterial and animal immunity!

www.nature.com/articles/s41...
The paradox of immune systems conservation between prokaryotes and eukaryotes - Nature Reviews Microbiology
The widespread prokaryotic immune systems, in particular restriction–modification, CRISPR–Cas and defensive toxin–antitoxin systems, are absent in eukaryotes, whereas relatively rare ones, such as Arg...
www.nature.com
February 6, 2026 at 3:15 PM
Reposted by Sorek Lab
The immune systems paradox

Some widespread prokaryotic immune systems are absent in eukaryotes, whereas relatively rare ones became central to eukaryotic innate immunity

@audeber.bsky.social & E. Koonin hypothesize the answer is #HGT

shareable link: rdcu.be/e2EmD

www.nature.com/articles/s41...
The paradox of immune systems conservation between prokaryotes and eukaryotes - Nature Reviews Microbiology
The widespread prokaryotic immune systems, in particular restriction–modification, CRISPR–Cas and defensive toxin–antitoxin systems, are absent in eukaryotes, whereas relatively rare ones, such as Arg...
www.nature.com
February 6, 2026 at 10:22 AM
Reposted by Sorek Lab
Amazing findings in geometry-based immune activation! Two bacterial defence systems detect phage-encoded ring oligomers, assemble high-order molecular complexes, and trigger abortive infection.

www.nature.com/articles/s41...
www.nature.com/articles/s41...
February 4, 2026 at 6:25 PM
Reposted by Sorek Lab
A DNA damage-activated kinase controls bacterial immune pathway expression https://www.biorxiv.org/content/10.64898/2026.02.02.703251v1
February 4, 2026 at 4:16 AM
Reposted by Sorek Lab
Bacteriophages mobilize bacterial defense systems via lateral transduction

#phage #virus #microecoevo

www.science.org/doi/10.1126/...
Bacteriophages mobilize bacterial defense systems via lateral transduction
Bacteriophages and PICIs spread bacterial defenses via lateral transduction, shaping microbial immunity and pathogen evolution.
www.science.org
January 25, 2026 at 3:55 PM
Reposted by Sorek Lab
A widespread extended arbitrium system controls lysis/lysogeny through antirepression

@cp-cellhostmicrobe.bsky.social from Avigdor Eldar

www.sciencedirect.com/science/arti...
A widespread extended arbitrium system controls lysis/lysogeny through antirepression
Many temperate Bacillus phages use the arbitrium peptide-based signaling system to regulate lysis-lysogeny decisions. In this system, the secreted Aim…
www.sciencedirect.com
February 1, 2026 at 11:21 AM
Highly recommended
For anyone interested in the history of molecular biology, I cannot recommend Judson's The Eighth Day of Creation highly enough. One of the great book on the history of science.

I have two copies because a actually wore out the first one (paperback)

www.cshlpress.com/default.tpl?...
January 31, 2026 at 3:59 PM
Reposted by Sorek Lab
Chemical inhibition of a bacterial immune system

Small molecules inhibit type II Thoeris anti-phage systems from diverse bacteria. One compound, IP6C, improves phage-therapy against P. aeruginosa & is effective against Thoeris in polymicrobial communities
www.cell.com/cell-host-mi...
Chemical inhibition of a bacterial immune system
Bacteriophages are promising alternatives to antibiotics for treating bacterial infections. However, bacteria possess immune systems that neutralize bacteriophages. Zang et al. discover small molecule...
www.cell.com
January 30, 2026 at 5:20 PM
Reposted by Sorek Lab
FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social.
📄 www.science.org/doi/10.1126/...
🌐 search.foldseek.com/foldmason
💾 github.com/steineggerla...
Multiple protein structure alignment at scale with FoldMason
Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...
www.science.org
January 30, 2026 at 6:11 AM
We found a new mode by which bacteria deplete NAD+ to protect from phages. And then we found how phages overcome this defense

Discovered by talented biochemist Dr Ilya Osterman, read the preprint: tinyurl.com/Narp-ap

A thread 🧵
Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases
Many bacterial defense systems restrict phage infection by breaking the molecule NAD+ to its constituents, adenosine diphosphate ribose (ADPR) and nicotinamide (Nam). To counter NAD+ depletion-mediated defense, phages evolved NAD+ reconstitution pathway 1 (NARP1), which uses ADPR and Nam to rebuild NAD+. Here we report a bacterial defense system called aRES, involving RES-domain proteins that degrade NAD+ into Nam and ADPR-1″-phosphate (ADPR-1P). This molecule cannot serve as a substrate for NARP1, so that NAD+ depletion by aRES defends against phages even if they encode NARP1. We further discover that some phages evolved an extended NARP1 pathway capable of overcoming aRES defense. In these phages, the NARP1 operon also includes a specialized phosphatase, which dephosphorylates ADPR-1P to form ADPR, a substrate from which NARP1 then reconstitutes NAD+. Other phages encode inhibitors that directly bind aRES proteins and physically block their active sites. Our study describes new layers in the NAD+-centric arms race between bacteria and phages and highlights the centrality of the NAD+ pool in cellular battles between viruses and their hosts. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, ERC-AdG GA 101018520 Israel Science Foundation, MAPATS grant 2720/22 Deutsche Forschungsgemeinschaft, SPP 2330, grant 464312965 Minerva Foundation with funding from the Federal German Ministry for Education and Research research grant from Magnus Konow in honor of his mother Olga Konow Rappaport Ministry of Aliyah and Immigrant Absorption, https://ror.org/05aycsg86 Clore Scholars Program
tinyurl.com
January 29, 2026 at 3:34 PM
Reposted by Sorek Lab
Today @nature.com, it's #AlphaGenome, to decipher and determine functionality of the regulatory (very challenging) variants in our genome.
Another big step of AI for advancing life science
nature.com/articles/s41...
January 28, 2026 at 4:19 PM
Reposted by Sorek Lab
A prophage-encoded abortive infection protein preserves host and prophage spread www.nature.com/articles/s41...
A prophage-encoded abortive infection protein preserves host and prophage spread - Nature
A Gifsy-1 prophage–encoded higher eukaryotes and prokaryotes nucleotide-binding protein, HepS, senses Siphoviridae infection, activates abortive defence by cleaving host transfer RNAs, blocks rival ph...
www.nature.com
January 28, 2026 at 7:13 PM
Reposted by Sorek Lab
Another cool finding of nucleotides activating antiphage defense 👇🏽

5′-phosphorylated deoxydinucleotides arising during host genome degradation activate the doughnut shaped ApeA oligomer, to cleave host
tRNAs and abort infection

✂️🧬➡️🍩✨➡️✂️☠️🦠

www.biorxiv.org/content/10.6...
www.biorxiv.org
January 27, 2026 at 1:13 PM
Reposted by Sorek Lab
A new paper from the lab on virus-like particles called eCISs www.nature.com/articles/s41...

How bacteria evolved thousands of precision nanoinjectors?

Some bacteria don’t secrete toxins — they inject them using phage-derived machines called extracellular contractile injection systems (eCISs).
A comprehensive catalogue of receptor-binding domains in extracellular contractile injection systems - Nature Communications
Extracellular contractile injection systems (eCISs) are bacteriophage tail-derived toxin delivery complexes that are present in many prokaryotes. Here, the authors present an analysis of eCIS tail fib...
www.nature.com
January 26, 2026 at 1:26 PM
Model bacteria that lack (or have minimal) defense systems have been crucial for understanding bacterial immunity. Now, there is a model defenseless plant. One may expect that this model can accelerate discoveries on plant immunity
Decoding plant defense signaling using the defenseless mutant

Baral and Brosché

nph.onlinelibrary.wiley.com/doi/10.1111/...
January 26, 2026 at 1:03 PM
Extremely well deserved! Congratulations Philip!
Join us in congratulating Philip J. Kranzusch (@kranzuschlab.bsky.social) of @danafarber.bsky.social and @harvardmed.bsky.social, winner of the 2026 NAS Award in Molecular Biology for his groundbreaking work advancing understanding of innate immunity! www.nasonline.org/award/nas-aw... #NASaward
January 22, 2026 at 4:36 PM
Reposted by Sorek Lab
Our latest CRISPR ring nuclease paper focusses on Csx15 - which seems to act as of a sponge as well as a canonical phosphodiesterase. Great work led by @haotianchi.bsky.social

www.biorxiv.org/content/10.6...
www.biorxiv.org
January 22, 2026 at 8:57 AM
Reposted by Sorek Lab
January 19, 2026 at 2:08 PM
Reposted by Sorek Lab
I’m thrilled to share our work on phage triggers of the bacterial immune system in its final form @natmicrobiol.nature.com www.nature.com/articles/s41...
A phage protein screen identifies triggers of the bacterial innate immune system - Nature Microbiology
A library of 400 phage protein-coding genes is used to find a trove of antiphage systems, revealing systems that target tail fibre and major capsid proteins.
www.nature.com
January 18, 2026 at 10:45 PM
Reposted by Sorek Lab
A researchers’ propensity for risky projects is passed down to their doctoral students — and stays with trainees after they leave the laboratory

go.nature.com/4qvaffO
PhD students’ taste for risk mirrors their supervisors’
Nature - Learned risk-taking behaviours can persist for years after leaving the lab — and even after taking on a new research topic.
go.nature.com
January 18, 2026 at 1:45 PM
Reposted by Sorek Lab
Out Now! A phage protein screen identifies triggers of the bacterial innate immune system #MicroSky
A phage protein screen identifies triggers of the bacterial innate immune system
Nature Microbiology, Published online: 16 January 2026; doi:10.1038/s41564-025-02239-6A library of 400 phage protein-coding genes is used to find a trove of antiphage systems, revealing systems that target tail fibre and major capsid proteins.
go.nature.com
January 16, 2026 at 4:53 PM
Reposted by Sorek Lab
Our new paper is out in Nature 🎉. We show that m1Ψ in mRNA vaccines doesn’t just quiet immunity, it also directly enhance translation by reshaping ribosome dynamics in a sequence-dependent way 🧬
Full paper : rdcu.be/eY5gx
N1-Methylpseudouridine directly modulates translation dynamics
Nature - N1-Methylpseudouridine enhances the translation of synthetic mRNAs, independently of innate immunity.
rdcu.be
January 15, 2026 at 11:56 AM