Shrikant N Kaushik
@shrikantk.bsky.social
PhD candidate in Computational Structural Biology. I am working around the protein-RNA conformational analysis to understand the protein-RNA recognition.
Pinned
Shrikant N Kaushik
@shrikantk.bsky.social
· Apr 15
Protein‐RNA Docking Benchmark v3.0 Integrated With Binding Affinity
We introduce an updated non-redundant protein-RNA docking benchmark version 3.0 (PRDBv3.0) containing 197 test cases curated from 288 unique protein–RNA complexes available in the Protein Data Bank u...
doi.org
🚀 Thrilled that the first chapter of my PhD, presenting the updated Protein–RNA Docking Benchmark v3.0 (PRDBv3.0), is now published in Proteins: Structure, Function, and Bioinformatics! 🧬
🔗 Paper: doi.org/10.1002/prot...
💻 GitHub: github.com/shrikantcomb...
🔗 Paper: doi.org/10.1002/prot...
💻 GitHub: github.com/shrikantcomb...
Reposted by Shrikant N Kaushik
🧪 We're beta testing – and we want your thoughts!
Try the new PDBe-KB Complex pages and let us know:
🔸 What’s working?
🔸 What’s confusing?
🔸 What features are lacking
💬 Feedback form: tinyurl.com/pdbekb-compl...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
Try the new PDBe-KB Complex pages and let us know:
🔸 What’s working?
🔸 What’s confusing?
🔸 What features are lacking
💬 Feedback form: tinyurl.com/pdbekb-compl...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
September 11, 2025 at 2:22 PM
🧪 We're beta testing – and we want your thoughts!
Try the new PDBe-KB Complex pages and let us know:
🔸 What’s working?
🔸 What’s confusing?
🔸 What features are lacking
💬 Feedback form: tinyurl.com/pdbekb-compl...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
Try the new PDBe-KB Complex pages and let us know:
🔸 What’s working?
🔸 What’s confusing?
🔸 What features are lacking
💬 Feedback form: tinyurl.com/pdbekb-compl...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
Please fill in a short survey!
#EMBL-EBI
#EMBL-EBI
If EMBL-EBI managed data resources have ever saved you time & effort, this is your chance to give back!
Fill in a 15-minute survey to help us:
🌍Demonstrate the real-world impact of our resources
🤓Understand your needs
🌟Secure continued funding
Closes 16 July
www.surveymonkey.com/r/QGFMBH8?ch...
Fill in a 15-minute survey to help us:
🌍Demonstrate the real-world impact of our resources
🤓Understand your needs
🌟Secure continued funding
Closes 16 July
www.surveymonkey.com/r/QGFMBH8?ch...
June 17, 2025 at 12:00 PM
Please fill in a short survey!
#EMBL-EBI
#EMBL-EBI
Reposted by Shrikant N Kaushik
We are happy to announce CAPRI Round 60, with one target: an antibody-peptide complex.
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
The European Bioinformatics Institute < EMBL-EBI
EMBL-EBI
www.ebi.ac.uk
May 28, 2025 at 2:05 PM
We are happy to announce CAPRI Round 60, with one target: an antibody-peptide complex.
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
🚀 Thrilled that the first chapter of my PhD, presenting the updated Protein–RNA Docking Benchmark v3.0 (PRDBv3.0), is now published in Proteins: Structure, Function, and Bioinformatics! 🧬
🔗 Paper: doi.org/10.1002/prot...
💻 GitHub: github.com/shrikantcomb...
🔗 Paper: doi.org/10.1002/prot...
💻 GitHub: github.com/shrikantcomb...
Protein‐RNA Docking Benchmark v3.0 Integrated With Binding Affinity
We introduce an updated non-redundant protein-RNA docking benchmark version 3.0 (PRDBv3.0) containing 197 test cases curated from 288 unique protein–RNA complexes available in the Protein Data Bank u...
doi.org
April 15, 2025 at 1:21 PM
🚀 Thrilled that the first chapter of my PhD, presenting the updated Protein–RNA Docking Benchmark v3.0 (PRDBv3.0), is now published in Proteins: Structure, Function, and Bioinformatics! 🧬
🔗 Paper: doi.org/10.1002/prot...
💻 GitHub: github.com/shrikantcomb...
🔗 Paper: doi.org/10.1002/prot...
💻 GitHub: github.com/shrikantcomb...
Reposted by Shrikant N Kaushik
I will soon become the Executive Director of @embl.org, leading EMBL with Peer Bork whilst EMBL finds its next Director General, my colleague, Jo McEntyre will become @ebi.embl.org's Interim Director. Jo's leadership and experience means I am confident EMBL-EBI will flourish over this time
📣 EMBL-EBI leadership update
Jo McEntyre will step into the role of Interim Director of EMBL-EBI, as Ewan Birney transitions to a new position as Executive Director of EMBL following Edith Heard’s upcoming departure.
www.ebi.ac.uk/about/news/a...
Jo McEntyre will step into the role of Interim Director of EMBL-EBI, as Ewan Birney transitions to a new position as Executive Director of EMBL following Edith Heard’s upcoming departure.
www.ebi.ac.uk/about/news/a...
Changes in EMBL-EBI leadership
Jo McEntyre will become Interim Director of EMBL-EBI as Ewan Birney takes up the role of EMBL Executive Director.
www.ebi.ac.uk
March 13, 2025 at 2:56 PM
I will soon become the Executive Director of @embl.org, leading EMBL with Peer Bork whilst EMBL finds its next Director General, my colleague, Jo McEntyre will become @ebi.embl.org's Interim Director. Jo's leadership and experience means I am confident EMBL-EBI will flourish over this time
Mashu Bhagat is presenting our work on "Structural analysis of proteins involved in binding both DNA and RNA" at The Expanding World of RBPs: from Posttranscriptional Control to Riboregulation at EMBL Heidelberg, Germany!
📍 Visit poster #47 to discuss our findings.
#EMBL #RBPs #EMBLRBP
📍 Visit poster #47 to discuss our findings.
#EMBL #RBPs #EMBLRBP
March 12, 2025 at 6:23 PM
Join us in Heidelberg for the 2nd edition of #EMBOComp3D! 🧬
Explore cutting-edge AI-driven innovations and classical methods in biomolecular research, new sessions on drug design, and make contacts during the job fair. Submit your abstract by 26 Aug 👉 s.embl.org/csb25-01-bl
Explore cutting-edge AI-driven innovations and classical methods in biomolecular research, new sessions on drug design, and make contacts during the job fair. Submit your abstract by 26 Aug 👉 s.embl.org/csb25-01-bl
February 26, 2025 at 4:21 AM
Reposted by Shrikant N Kaushik
New webinar series featuring InterPro, register now!
Are you curious about how LLMs can be applied to bioinformatics? This series of four webinars covers fundamentals through to cutting-edge applications in knowledge extraction & summarisation.
Registration is free but essential for each webinar: www.ebi.ac.uk/training/eve...
#GeneSky 🖥️🧬🧪
Registration is free but essential for each webinar: www.ebi.ac.uk/training/eve...
#GeneSky 🖥️🧬🧪
February 14, 2025 at 9:11 AM
New webinar series featuring InterPro, register now!
Excited to share the 1st Edition of the Computational Biology Conference (CBC 2025) organized by the Indian Biological Data Centre (IBDC) at the Regional Centre for Biotechnology (RCB), Faridabad, Haryana, India!
🗓 Dates: February 19–21, 2025
More Info: ibdc.dbtindia.gov.in/cbc2025/
🗓 Dates: February 19–21, 2025
More Info: ibdc.dbtindia.gov.in/cbc2025/
November 30, 2024 at 6:52 AM
Excited to share the 1st Edition of the Computational Biology Conference (CBC 2025) organized by the Indian Biological Data Centre (IBDC) at the Regional Centre for Biotechnology (RCB), Faridabad, Haryana, India!
🗓 Dates: February 19–21, 2025
More Info: ibdc.dbtindia.gov.in/cbc2025/
🗓 Dates: February 19–21, 2025
More Info: ibdc.dbtindia.gov.in/cbc2025/