CAPRI
@capridock.bsky.social
The community-wide CAPRI protein docking and assembly modeling experiment
A new CAPRI round is coming up with 4 antibody-antigen targets! The registration opens next Monday (Sept. 22nd). Check it out at www.ebi.ac.uk/pdbe/complex...
The European Bioinformatics Institute < EMBL-EBI
EMBL-EBI
www.ebi.ac.uk
September 19, 2025 at 9:35 PM
A new CAPRI round is coming up with 4 antibody-antigen targets! The registration opens next Monday (Sept. 22nd). Check it out at www.ebi.ac.uk/pdbe/complex...
Reposted by CAPRI
Navigating the pre- and post-AlphaFold divide: CAPRI 8th evaluation meeting
www.authorea.com/users/348903...
www.authorea.com/users/348903...
Navigating the Pre- and Post-AlphaFold Divide: CAPRI 8th evaluation meeting, February 12-14, Grenoble, FR
Navigating the Pre- and Post-AlphaFold Divide: CAPRI 8th evaluation meeting, February 12-14, Grenoble, FRAlexandre M.J.J. Bonvin1 and M. F. Lensink21 Bijvoet Centre for Biomolecular Research, Faculty ...
www.authorea.com
September 15, 2025 at 3:36 PM
Navigating the pre- and post-AlphaFold divide: CAPRI 8th evaluation meeting
www.authorea.com/users/348903...
www.authorea.com/users/348903...
We are happy to announce CAPRI Round 60, with one target: an antibody-peptide complex.
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
The European Bioinformatics Institute < EMBL-EBI
EMBL-EBI
www.ebi.ac.uk
May 28, 2025 at 2:05 PM
We are happy to announce CAPRI Round 60, with one target: an antibody-peptide complex.
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
Registration is open.
Prediction starts June 9th.
www.ebi.ac.uk/pdbe/complex...
After a busy CASP/CAPRI year we resume our rolling CAPRI rounds, announcing the 1st target of 2025.
It consists of an antibody-glycan complex. The glycan is heptyl α-D-mannopyranoside.
Registration for this target is now open.
pdbe.org/capri
It consists of an antibody-glycan complex. The glycan is heptyl α-D-mannopyranoside.
Registration for this target is now open.
pdbe.org/capri
The European Bioinformatics Institute < EMBL-EBI
EMBL-EBI
pdbe.org
December 19, 2024 at 1:15 PM
After a busy CASP/CAPRI year we resume our rolling CAPRI rounds, announcing the 1st target of 2025.
It consists of an antibody-glycan complex. The glycan is heptyl α-D-mannopyranoside.
Registration for this target is now open.
pdbe.org/capri
It consists of an antibody-glycan complex. The glycan is heptyl α-D-mannopyranoside.
Registration for this target is now open.
pdbe.org/capri
Reposted by CAPRI
Early December, the CASP16 Meeting was held in the Palladium resort in Punta Cana, Dominican Republic. Nick Grishin, myself, and Qian Qong presented the assessment of the monomeric structure predictions, the assembly predictions and of monomers in their oligomeric context. 1/n
December 12, 2024 at 4:54 PM
Early December, the CASP16 Meeting was held in the Palladium resort in Punta Cana, Dominican Republic. Nick Grishin, myself, and Qian Qong presented the assessment of the monomeric structure predictions, the assembly predictions and of monomers in their oligomeric context. 1/n
CAPRI conclusions from the CASP16 assembly session
December 2, 2024 at 4:26 PM
CAPRI conclusions from the CASP16 assembly session
Improvement in performance with availability of MassiveFold data. Round 58 (CASP stage2 vs stage1)
December 2, 2024 at 3:58 PM
Improvement in performance with availability of MassiveFold data. Round 58 (CASP stage2 vs stage1)
CAPRI ranking on relative model quality (highlighting predictors that do well on the more difficult targets)
December 2, 2024 at 3:55 PM
CAPRI ranking on relative model quality (highlighting predictors that do well on the more difficult targets)
The CAPRI ranking on absolute model quality for CAPRI Round 57 (CASP16 session)
December 2, 2024 at 3:53 PM
The CAPRI ranking on absolute model quality for CAPRI Round 57 (CASP16 session)
Reposted by CAPRI
And the main conclusions for this years multimer predictions
December 2, 2024 at 2:50 PM
And the main conclusions for this years multimer predictions
How much has the protein assembly modeling field progressed the past two years?
At the CASP16 conference in Punta Cana early December we will present the results of the CASP/CAPRI joint blind prediction round: Round 57 (normal), Round 58 (with MassiveFold data) and Scoring (also with MassiveFold)
At the CASP16 conference in Punta Cana early December we will present the results of the CASP/CAPRI joint blind prediction round: Round 57 (normal), Round 58 (with MassiveFold data) and Scoring (also with MassiveFold)
November 25, 2024 at 12:54 PM
How much has the protein assembly modeling field progressed the past two years?
At the CASP16 conference in Punta Cana early December we will present the results of the CASP/CAPRI joint blind prediction round: Round 57 (normal), Round 58 (with MassiveFold data) and Scoring (also with MassiveFold)
At the CASP16 conference in Punta Cana early December we will present the results of the CASP/CAPRI joint blind prediction round: Round 57 (normal), Round 58 (with MassiveFold data) and Scoring (also with MassiveFold)
Reposted by CAPRI
MassiveFold: unveiling AlphaFold’s hidden potential with optimized and parallelized massive sampling.
Out now.
www.nature.com/articles/s43...
Out now.
www.nature.com/articles/s43...
MassiveFold: unveiling AlphaFold’s hidden potential with optimized and parallelized massive sampling - Nature Computational Science
Although AlphaFold is very efficient for protein structure prediction, massive sampling is a very GPU demanding task. MassiveFold overcomes this limitation, being capable of parallelizing structure pr...
www.nature.com
November 11, 2024 at 10:49 AM
MassiveFold: unveiling AlphaFold’s hidden potential with optimized and parallelized massive sampling.
Out now.
www.nature.com/articles/s43...
Out now.
www.nature.com/articles/s43...
CASP16 / CAPRI Round 57 has started.
The first target was released today.
The first target was released today.
May 1, 2024 at 9:51 PM
CASP16 / CAPRI Round 57 has started.
The first target was released today.
The first target was released today.
Reposted by CAPRI
Reposted by CAPRI
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment
doi.org/10.1002/prot...
doi.org/10.1002/prot...
October 31, 2023 at 5:14 PM
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment
doi.org/10.1002/prot...
doi.org/10.1002/prot...
Welcome to the bluesky presence of the community-wide CAPRI protein docking and assembly modeling experiment.
Please note the 8th CAPRI assessment meeting will be held Feb 12-16 in Grenoble, France, back-to-back with the Integrative Computational Biology meeting. Details to follow.
Please note the 8th CAPRI assessment meeting will be held Feb 12-16 in Grenoble, France, back-to-back with the Integrative Computational Biology meeting. Details to follow.
November 14, 2023 at 10:59 AM
Welcome to the bluesky presence of the community-wide CAPRI protein docking and assembly modeling experiment.
Please note the 8th CAPRI assessment meeting will be held Feb 12-16 in Grenoble, France, back-to-back with the Integrative Computational Biology meeting. Details to follow.
Please note the 8th CAPRI assessment meeting will be held Feb 12-16 in Grenoble, France, back-to-back with the Integrative Computational Biology meeting. Details to follow.