Jose A. Seoane
@seoaneja.bsky.social
Head of Cancer computational biology group @ VHIO
Stanford & UoBristol postdoc, UDC PhD. Repunantiño
Stanford & UoBristol postdoc, UDC PhD. Repunantiño
Reposted by Jose A. Seoane
Are you a cancer scientist looking to strengthen your genomics epidemiology skills and knowledge?
Join experts at our #CancerEpi2026 course to transform your understanding of cancer causes and prevention.
🗓️ 16-18 February 2026
Apply by 3 November
📎bit.ly/41mRDnD
#OncSky #GeneSky 🧪🖥️🧬
Join experts at our #CancerEpi2026 course to transform your understanding of cancer causes and prevention.
🗓️ 16-18 February 2026
Apply by 3 November
📎bit.ly/41mRDnD
#OncSky #GeneSky 🧪🖥️🧬
August 5, 2025 at 7:00 AM
Are you a cancer scientist looking to strengthen your genomics epidemiology skills and knowledge?
Join experts at our #CancerEpi2026 course to transform your understanding of cancer causes and prevention.
🗓️ 16-18 February 2026
Apply by 3 November
📎bit.ly/41mRDnD
#OncSky #GeneSky 🧪🖥️🧬
Join experts at our #CancerEpi2026 course to transform your understanding of cancer causes and prevention.
🗓️ 16-18 February 2026
Apply by 3 November
📎bit.ly/41mRDnD
#OncSky #GeneSky 🧪🖥️🧬
Reposted by Jose A. Seoane
Meet our exceptional training team for #CancerEpi2026 💫
Field experts will guide you through how to use the best genomics tools and approaches to detect cancer mutations.
🗓️ 16-18 February 2026
Apply by 3 November - bursaries available
📎 bit.ly/41mRDnD
#OncSky #GeneSky #CancerSky 🧪🖥️🧬
Field experts will guide you through how to use the best genomics tools and approaches to detect cancer mutations.
🗓️ 16-18 February 2026
Apply by 3 November - bursaries available
📎 bit.ly/41mRDnD
#OncSky #GeneSky #CancerSky 🧪🖥️🧬
October 23, 2025 at 7:00 AM
Meet our exceptional training team for #CancerEpi2026 💫
Field experts will guide you through how to use the best genomics tools and approaches to detect cancer mutations.
🗓️ 16-18 February 2026
Apply by 3 November - bursaries available
📎 bit.ly/41mRDnD
#OncSky #GeneSky #CancerSky 🧪🖥️🧬
Field experts will guide you through how to use the best genomics tools and approaches to detect cancer mutations.
🗓️ 16-18 February 2026
Apply by 3 November - bursaries available
📎 bit.ly/41mRDnD
#OncSky #GeneSky #CancerSky 🧪🖥️🧬
Reposted by Jose A. Seoane
Last week, pre-doctoral researchers @juanravm.bsky.social and @mariabuxi.bsky.social attended #CCEsumschool25 to showcase some of our group's research 👏🏼
Thanks to @vhio.bsky.social and @cancercoreeurope.bsky.social for this valuable opportunity for the next generation of cancer researchers 🔬
Thanks to @vhio.bsky.social and @cancercoreeurope.bsky.social for this valuable opportunity for the next generation of cancer researchers 🔬
October 16, 2025 at 10:19 AM
Last week, pre-doctoral researchers @juanravm.bsky.social and @mariabuxi.bsky.social attended #CCEsumschool25 to showcase some of our group's research 👏🏼
Thanks to @vhio.bsky.social and @cancercoreeurope.bsky.social for this valuable opportunity for the next generation of cancer researchers 🔬
Thanks to @vhio.bsky.social and @cancercoreeurope.bsky.social for this valuable opportunity for the next generation of cancer researchers 🔬
Reposted by Jose A. Seoane
Studying cancer evolution needs multi-region or single cell seq for phylogenetics, right? Amazingly (I think!) we found single-sample bulk methylation suffices, via analysis of "fluctuating methylation". In @nature.com today led by brilliant @calumgabbutt.bsky.social www.nature.com/articles/s41...
Fluctuating DNA methylation tracks cancer evolution at clinical scale - Nature
Cancer evolutionary dynamics are quantitatively inferred using a method, EVOFLUx, applied to fluctuating DNA methylation.
www.nature.com
September 10, 2025 at 3:21 PM
Studying cancer evolution needs multi-region or single cell seq for phylogenetics, right? Amazingly (I think!) we found single-sample bulk methylation suffices, via analysis of "fluctuating methylation". In @nature.com today led by brilliant @calumgabbutt.bsky.social www.nature.com/articles/s41...
Reposted by Jose A. Seoane
Un algoritmo epigenético rastrea el origen del cáncer y predice su progresión
Un algoritmo epigenético rastrea el origen del cáncer y predice su progresión
Un equipo científico hispano-británico halla una 'caja negra' del cáncer que puede ayudar a desvelar la procedencia de los tumores y anticipar su evolución
www.eldiario.es
September 10, 2025 at 4:59 PM
Un algoritmo epigenético rastrea el origen del cáncer y predice su progresión
Reposted by Jose A. Seoane
@jengreitz.bsky.social l & my lab want to co-hire a computational biologist/biostatistician with project management expertise to help map the regulatory code of the human genome and discover genetic mechanisms of disease.
Details below
careersearch.stanford.edu/jobs/computa...
Plz RT
Details below
careersearch.stanford.edu/jobs/computa...
Plz RT
August 19, 2025 at 12:29 AM
@jengreitz.bsky.social l & my lab want to co-hire a computational biologist/biostatistician with project management expertise to help map the regulatory code of the human genome and discover genetic mechanisms of disease.
Details below
careersearch.stanford.edu/jobs/computa...
Plz RT
Details below
careersearch.stanford.edu/jobs/computa...
Plz RT
Reposted by Jose A. Seoane
Are you looking for a statistics/ML postdoc? Come to work with @antonis02.bsky.social and me in the NEMO study, an international collaboration aiming to detect ovarian cancer earlier through cutting-edge multi-omics, funded by the Alliance for Cancer Early Detection.
www.cam.ac.uk/jobs/researc...
www.cam.ac.uk/jobs/researc...
Research Associate*/Research Assistant in Multi-omics Early Detection of Ovarian Cancer (Fixed Term)
An exciting opportunity has arisen for a highly motivated Research Associate to join the Centre for Cancer Genetic Epidemiology (CCGE) at the Department of Public Health & Primary Care, University of
www.cam.ac.uk
August 13, 2025 at 9:09 AM
Are you looking for a statistics/ML postdoc? Come to work with @antonis02.bsky.social and me in the NEMO study, an international collaboration aiming to detect ovarian cancer earlier through cutting-edge multi-omics, funded by the Alliance for Cancer Early Detection.
www.cam.ac.uk/jobs/researc...
www.cam.ac.uk/jobs/researc...
Reposted by Jose A. Seoane
📢 We have an open position at University of Geneva for a PhD student with CS/Math/Physics background to study adaptive immune responses using deep learning. If interested please contact me directly!
August 5, 2025 at 10:06 AM
📢 We have an open position at University of Geneva for a PhD student with CS/Math/Physics background to study adaptive immune responses using deep learning. If interested please contact me directly!
Reposted by Jose A. Seoane
We are hiring!
We are searching for a motivated bioinformatics scientist interested in joining our team!
Apply below:
jobs.vhio.net/jobs/6203915...
We are searching for a motivated bioinformatics scientist interested in joining our team!
Apply below:
jobs.vhio.net/jobs/6203915...
2025-040-01 Bioinformatics Scientist - VHIO
Under the leadership of Josep Tabernero, VHIO is an internationally recognized cancer center. Its multidisciplinary, collaborative model drives scientific progress and innovative cancer treatments.
jobs.vhio.net
July 21, 2025 at 10:01 AM
We are hiring!
We are searching for a motivated bioinformatics scientist interested in joining our team!
Apply below:
jobs.vhio.net/jobs/6203915...
We are searching for a motivated bioinformatics scientist interested in joining our team!
Apply below:
jobs.vhio.net/jobs/6203915...
Reposted by Jose A. Seoane
Atul Butte died yesterday.
The world lost a giant.
A big bear of a man.
With a huge smile.
With love for everyone.
With energy that could power a room.
I loved everything about Atul.
I loved how he was always happy.
I loved how excited he was about science and helping people.
The world lost a giant.
A big bear of a man.
With a huge smile.
With love for everyone.
With energy that could power a room.
I loved everything about Atul.
I loved how he was always happy.
I loved how excited he was about science and helping people.
June 14, 2025 at 6:35 PM
Atul Butte died yesterday.
The world lost a giant.
A big bear of a man.
With a huge smile.
With love for everyone.
With energy that could power a room.
I loved everything about Atul.
I loved how he was always happy.
I loved how excited he was about science and helping people.
The world lost a giant.
A big bear of a man.
With a huge smile.
With love for everyone.
With energy that could power a room.
I loved everything about Atul.
I loved how he was always happy.
I loved how excited he was about science and helping people.
Reposted by Jose A. Seoane
Reminder that the MSCA postdoctoral program exists. If you have a PhD and want to work in a European lab, you have until September to apply. Just contact them now.
ec.europa.eu/info/funding...
ec.europa.eu/info/funding...
ec.europa.eu
June 6, 2025 at 5:47 PM
Reminder that the MSCA postdoctoral program exists. If you have a PhD and want to work in a European lab, you have until September to apply. Just contact them now.
ec.europa.eu/info/funding...
ec.europa.eu/info/funding...
Reposted by Jose A. Seoane
I have an opportunity to hire a staff scientist for my lab. Looking for someone with outstanding skillset in ML/statistics, genomics applications; interest in mentoring, strong publication record, PD experience required.
Email CV to me+cc my assistant (see 'contact' on my website). Ad to follow.
Email CV to me+cc my assistant (see 'contact' on my website). Ad to follow.
June 1, 2025 at 3:33 PM
I have an opportunity to hire a staff scientist for my lab. Looking for someone with outstanding skillset in ML/statistics, genomics applications; interest in mentoring, strong publication record, PD experience required.
Email CV to me+cc my assistant (see 'contact' on my website). Ad to follow.
Email CV to me+cc my assistant (see 'contact' on my website). Ad to follow.
Reposted by Jose A. Seoane
Our work on lineage tracing with somatic epimutations is finally out in @nature.com!
Check out the thread by @larsplus.bsky.social below.
EPI-clone is a revolutionary technique for lineage tracing and it will immediately impact how we trace clones everywhere.
Detailed protocols coming out soon!
Check out the thread by @larsplus.bsky.social below.
EPI-clone is a revolutionary technique for lineage tracing and it will immediately impact how we trace clones everywhere.
Detailed protocols coming out soon!
Out @nature.com: Clonal tracing with somatic epimutations
🧬 Single cell methylome encodes cell state & clonal identity
🔨 EPI-Clone reads out both (+mutations, +RNA) at scale
🩸 Clonal expansions of HSCs are universal from age 50, not driven by CH mutations
doi.org/10.1038/s415...
🧵
🧬 Single cell methylome encodes cell state & clonal identity
🔨 EPI-Clone reads out both (+mutations, +RNA) at scale
🩸 Clonal expansions of HSCs are universal from age 50, not driven by CH mutations
doi.org/10.1038/s415...
🧵
Clonal tracing with somatic epimutations reveals dynamics of blood ageing - Nature
The discovery that DNA methylation of different CpG sites can serve as digital barcodes of clonal identity led to the development of EPI-Clone, an algorithm that enables single-cell lineage tracing th...
doi.org
May 21, 2025 at 4:06 PM
Our work on lineage tracing with somatic epimutations is finally out in @nature.com!
Check out the thread by @larsplus.bsky.social below.
EPI-clone is a revolutionary technique for lineage tracing and it will immediately impact how we trace clones everywhere.
Detailed protocols coming out soon!
Check out the thread by @larsplus.bsky.social below.
EPI-clone is a revolutionary technique for lineage tracing and it will immediately impact how we trace clones everywhere.
Detailed protocols coming out soon!
Reposted by Jose A. Seoane
🚨 Exciting Opportunity ‼️ The #VHIO Undergraduate International Computational Oncology Award is now OPEN 🚀
Join a one-month stay at VHIO’s computational oncology labs & contribute to cutting-edge cancer research!
Apply 👉 https://linke.to/VHIOUndergraduate25 📅 Deadline: May 23rd
#SOMMVHIO #CRISVHIO
Join a one-month stay at VHIO’s computational oncology labs & contribute to cutting-edge cancer research!
Apply 👉 https://linke.to/VHIOUndergraduate25 📅 Deadline: May 23rd
#SOMMVHIO #CRISVHIO
April 17, 2025 at 5:02 PM
🚨 Exciting Opportunity ‼️ The #VHIO Undergraduate International Computational Oncology Award is now OPEN 🚀
Join a one-month stay at VHIO’s computational oncology labs & contribute to cutting-edge cancer research!
Apply 👉 https://linke.to/VHIOUndergraduate25 📅 Deadline: May 23rd
#SOMMVHIO #CRISVHIO
Join a one-month stay at VHIO’s computational oncology labs & contribute to cutting-edge cancer research!
Apply 👉 https://linke.to/VHIOUndergraduate25 📅 Deadline: May 23rd
#SOMMVHIO #CRISVHIO
Reposted by Jose A. Seoane
🔬Exposomal determinants of non-genetic plasticity in tumor initiation.
✍️ Davide Carra, Silvana C.E. Maas, @seoaneja.bsky.social, @direnaac.bsky.social
📰 @cp-trendscancer.bsky.social
Read more here 🔗 https://shorturl.at/CaicQ
📌 DOI: https://doi.org/10.1016/j.trecan.2025.01.010
#IRBScience 🧪
✍️ Davide Carra, Silvana C.E. Maas, @seoaneja.bsky.social, @direnaac.bsky.social
📰 @cp-trendscancer.bsky.social
Read more here 🔗 https://shorturl.at/CaicQ
📌 DOI: https://doi.org/10.1016/j.trecan.2025.01.010
#IRBScience 🧪
April 16, 2025 at 9:02 AM
🔬Exposomal determinants of non-genetic plasticity in tumor initiation.
✍️ Davide Carra, Silvana C.E. Maas, @seoaneja.bsky.social, @direnaac.bsky.social
📰 @cp-trendscancer.bsky.social
Read more here 🔗 https://shorturl.at/CaicQ
📌 DOI: https://doi.org/10.1016/j.trecan.2025.01.010
#IRBScience 🧪
✍️ Davide Carra, Silvana C.E. Maas, @seoaneja.bsky.social, @direnaac.bsky.social
📰 @cp-trendscancer.bsky.social
Read more here 🔗 https://shorturl.at/CaicQ
📌 DOI: https://doi.org/10.1016/j.trecan.2025.01.010
#IRBScience 🧪
Reposted by Jose A. Seoane
Excited to share our perspective led by @davidecarra.bsky.social with @silvanamaas.bsky.social & @seoaneja.bsky.social on how non-genetic #plasticity rewires epithelial cells and their stromal/immune/microbial contextures to fuel #cancer initiation, linking exposomal histories with disease fates ⬇️
We turned 10! 🥳 We're celebrating a decade of progress and the vital role of early career researchers in shaping the future of cancer research. Explore our special issue—featuring work by researchers within 6 years of independence #ecr. www.cell.com/trends/cance...
April 10, 2025 at 8:27 PM
Excited to share our perspective led by @davidecarra.bsky.social with @silvanamaas.bsky.social & @seoaneja.bsky.social on how non-genetic #plasticity rewires epithelial cells and their stromal/immune/microbial contextures to fuel #cancer initiation, linking exposomal histories with disease fates ⬇️
Reposted by Jose A. Seoane
📢#JOBOFFER: Junior Group Leader in Computational Cancer Biomedicine to establish an independent research group
We seek a talented scientist with expertise in:
• Bioinformatics
• AI
• Multi-omics data integration
📅 Deadline April 14
👉https://f.mtr.cool/tyfiexzxuo
We seek a talented scientist with expertise in:
• Bioinformatics
• AI
• Multi-omics data integration
📅 Deadline April 14
👉https://f.mtr.cool/tyfiexzxuo
April 1, 2025 at 12:02 PM
📢#JOBOFFER: Junior Group Leader in Computational Cancer Biomedicine to establish an independent research group
We seek a talented scientist with expertise in:
• Bioinformatics
• AI
• Multi-omics data integration
📅 Deadline April 14
👉https://f.mtr.cool/tyfiexzxuo
We seek a talented scientist with expertise in:
• Bioinformatics
• AI
• Multi-omics data integration
📅 Deadline April 14
👉https://f.mtr.cool/tyfiexzxuo
Reposted by Jose A. Seoane
Post-doc opening to join our lab @ebi.embl.org to develop&apply #bioinformatics and #machine-learning methods to study intra-/extra cellular networks to extract disease mechanisms from #single-cell and #spatial multiomic data - please share 🙏 : embl.wd103.myworkdayjobs.com/EMBL/job/Hin...
Postdoctoral fellow - Saez-Rodriguez Group
Your group Saez-Rodriguez Research Group Your supervisor Julio Saez-Rodriguez Your role As a postdoctoral fellow in the Saez Rodriguez group, you will develop and apply computational methods and tools...
embl.wd103.myworkdayjobs.com
February 11, 2025 at 10:17 AM
Post-doc opening to join our lab @ebi.embl.org to develop&apply #bioinformatics and #machine-learning methods to study intra-/extra cellular networks to extract disease mechanisms from #single-cell and #spatial multiomic data - please share 🙏 : embl.wd103.myworkdayjobs.com/EMBL/job/Hin...
Reposted by Jose A. Seoane
Rates of #cancer in #young #adults have risen dramatically in recent years - as discussed in this article..
We urgently need to invest in #research 🧪 on early-onset cancers to understand - why?
www.theguardian.com/science/2025...
We urgently need to invest in #research 🧪 on early-onset cancers to understand - why?
www.theguardian.com/science/2025...
Ultra-processed food? Forever chemicals? Declining birth rates? What’s behind rising cancer in the under-50s?
Research into the disease has never been more far-reaching, but there is little consensus as to what is causing the rocketing rates of diagnosis in young adults
www.theguardian.com
January 26, 2025 at 1:53 PM
Rates of #cancer in #young #adults have risen dramatically in recent years - as discussed in this article..
We urgently need to invest in #research 🧪 on early-onset cancers to understand - why?
www.theguardian.com/science/2025...
We urgently need to invest in #research 🧪 on early-onset cancers to understand - why?
www.theguardian.com/science/2025...
Reposted by Jose A. Seoane
Open call for a Junior Group Leader position in #ComputationalOncology at Vall d'Hebron Institute of Oncology (VHIO) @vhio.bsky.social.
See details below and consider applying jobs.vhio.net/en/jobs/5412... #CancerResearch
See details below and consider applying jobs.vhio.net/en/jobs/5412... #CancerResearch
2024-081-01 Junior Group Leader - VHIO
Under the leadership of Josep Tabernero, VHIO is an internationally recognized cancer center. Its multidisciplinary, collaborative model drives scientific progress and innovative cancer treatments.
jobs.vhio.net
January 9, 2025 at 6:38 PM
Open call for a Junior Group Leader position in #ComputationalOncology at Vall d'Hebron Institute of Oncology (VHIO) @vhio.bsky.social.
See details below and consider applying jobs.vhio.net/en/jobs/5412... #CancerResearch
See details below and consider applying jobs.vhio.net/en/jobs/5412... #CancerResearch
Reposted by Jose A. Seoane
Now online in Cancer Discovery: Ancestral Differences in Anti-Cancer Treatment Efficacy and Their Underlying Genomic and Molecular Alterations - by Mei Luo, Jingwen Yang, Gordon Mills, Eytan Ruppin, Leng Han, and colleagues doi.org/10.1158/2159...
November 27, 2024 at 4:47 PM
Now online in Cancer Discovery: Ancestral Differences in Anti-Cancer Treatment Efficacy and Their Underlying Genomic and Molecular Alterations - by Mei Luo, Jingwen Yang, Gordon Mills, Eytan Ruppin, Leng Han, and colleagues doi.org/10.1158/2159...
