PathoGenOmics Lab
@pathogenomics.bsky.social
PathoGenOmics research group at I2SysBio. Having fun learning how pathogens evolve.
Reposted by PathoGenOmics Lab
🚨JOB ALERT
Dr. Buceta at @i2sysbio.es welcome applications for 36-month postdocs on:
👉 Mechanical markers of tissue dysfunction due to ageing – digital twins & machine learning
Details here: fgcsic.es/convocatoria...
📩 Contact javier.buceta@csic.es to shape your proposal!
@epimechfc.bsky.social
Dr. Buceta at @i2sysbio.es welcome applications for 36-month postdocs on:
👉 Mechanical markers of tissue dysfunction due to ageing – digital twins & machine learning
Details here: fgcsic.es/convocatoria...
📩 Contact javier.buceta@csic.es to shape your proposal!
@epimechfc.bsky.social
ComFuturo Fourth Edition: ComFuturo iAGE Call - FGCSIC
The Fundación General CSIC (FGCSIC) launches the fourth edition of its ComFuturo programme: ComFuturo iAGE, a postdoctoral initiative co-financed by the Marie Skłodowska-Curie Actions COFUND scheme of...
fgcsic.es
October 13, 2025 at 1:04 PM
🚨JOB ALERT
Dr. Buceta at @i2sysbio.es welcome applications for 36-month postdocs on:
👉 Mechanical markers of tissue dysfunction due to ageing – digital twins & machine learning
Details here: fgcsic.es/convocatoria...
📩 Contact javier.buceta@csic.es to shape your proposal!
@epimechfc.bsky.social
Dr. Buceta at @i2sysbio.es welcome applications for 36-month postdocs on:
👉 Mechanical markers of tissue dysfunction due to ageing – digital twins & machine learning
Details here: fgcsic.es/convocatoria...
📩 Contact javier.buceta@csic.es to shape your proposal!
@epimechfc.bsky.social
Come and join us in Valencia next January for the meeting of the Spanish Society of Evolutionary Biology. Deadline for abstracts October 22nd. sesbe2026.es/registration/
October 16, 2025 at 11:10 AM
Come and join us in Valencia next January for the meeting of the Spanish Society of Evolutionary Biology. Deadline for abstracts October 22nd. sesbe2026.es/registration/
Reposted by PathoGenOmics Lab
Back from #MycoVLC2025 after presenting our M. tuberculosis work. Huge thanks to Mireia for stellar mentorship. Proud of my @pathogenomics.bsky.social mycolegas for standout posters. Energized to turn ideas into results. #TB #TBResearch @i2sysbio.es
October 10, 2025 at 8:04 PM
Back from #MycoVLC2025 after presenting our M. tuberculosis work. Huge thanks to Mireia for stellar mentorship. Proud of my @pathogenomics.bsky.social mycolegas for standout posters. Energized to turn ideas into results. #TB #TBResearch @i2sysbio.es
Reposted by PathoGenOmics Lab
Then, we Mireia Coscollà ( @pathogenomics.bsky.social ), from I2SysBio ( @i2sysbio.es ) talked about compatibility between hosts in bacterial infections.
October 12, 2025 at 3:12 PM
Then, we Mireia Coscollà ( @pathogenomics.bsky.social ), from I2SysBio ( @i2sysbio.es ) talked about compatibility between hosts in bacterial infections.
Reposted by PathoGenOmics Lab
From fàstic to fantastic population genetics with @pathogenomics.bsky.social :announcing Fstic a high-performance Rust CLI that computes N×N genetic distance matrices from VCFs or allele-frequency tables at scale. (fàstic=Valencian/Catalan for annoyance)Code: github.com/PathoGenOmic... @i2sysbio.es
GitHub - PathoGenOmics-Lab/fstic: Calculates pairwise distances between samples using alelle frequencies
Calculates pairwise distances between samples using alelle frequencies - PathoGenOmics-Lab/fstic
github.com
August 13, 2025 at 7:21 AM
From fàstic to fantastic population genetics with @pathogenomics.bsky.social :announcing Fstic a high-performance Rust CLI that computes N×N genetic distance matrices from VCFs or allele-frequency tables at scale. (fàstic=Valencian/Catalan for annoyance)Code: github.com/PathoGenOmic... @i2sysbio.es
Reposted by PathoGenOmics Lab
El #I2SysBio (@csic.es - @uv.es) ha lanzado una serie de vídeos sobre los diferentes grupos de investigación en este centro. El nuevo video es sobre el grupo Orquestación transcripcional del metabolismo vegetal de Tomas Matús @jtmatus.bsky.social
🎥🌐 youtu.be/43V4MOtAf4k?...
🧪🧬🖥️ 🌾🌱🍇 #plantscience
🎥🌐 youtu.be/43V4MOtAf4k?...
🧪🧬🖥️ 🌾🌱🍇 #plantscience
Interview of Tomás Matus, PI of the Transcriptional Orchestration of plant metabolism group
YouTube video by Institute for Integrative Systems Biology I2SysBio
youtu.be
July 18, 2025 at 7:56 AM
El #I2SysBio (@csic.es - @uv.es) ha lanzado una serie de vídeos sobre los diferentes grupos de investigación en este centro. El nuevo video es sobre el grupo Orquestación transcripcional del metabolismo vegetal de Tomas Matús @jtmatus.bsky.social
🎥🌐 youtu.be/43V4MOtAf4k?...
🧪🧬🖥️ 🌾🌱🍇 #plantscience
🎥🌐 youtu.be/43V4MOtAf4k?...
🧪🧬🖥️ 🌾🌱🍇 #plantscience
Spanish Society Evolutionary Biology meeting January 2026 in the botanical Garden @uv.es in Spain. Registration 200-350€. Preliminary program with confirmed keynote speakers: sesbe2026.es/programme/. Abstract submission until September 15th. sesbe2026.es/abstract/. Come to Valencia and join us!
July 14, 2025 at 11:05 AM
Spanish Society Evolutionary Biology meeting January 2026 in the botanical Garden @uv.es in Spain. Registration 200-350€. Preliminary program with confirmed keynote speakers: sesbe2026.es/programme/. Abstract submission until September 15th. sesbe2026.es/abstract/. Come to Valencia and join us!
Reposted by PathoGenOmics Lab
VIPERA v1.2.1 is here!! 🐍🐍🐍
Our workflow for SARS-CoV-2 intra-patient evolution analysis now fully supports Snakemake 8/9 (with dedicated CI tests), BIONJ trees, richer reports, added config parameters, modular Snakefiles and more! 🧪👉 github.com/PathoGenOmics-Lab/VIPERA
Our workflow for SARS-CoV-2 intra-patient evolution analysis now fully supports Snakemake 8/9 (with dedicated CI tests), BIONJ trees, richer reports, added config parameters, modular Snakefiles and more! 🧪👉 github.com/PathoGenOmics-Lab/VIPERA
GitHub - PathoGenOmics-Lab/VIPERA: A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis - PathoGenOmics-Lab/VIPERA
github.com
June 30, 2025 at 7:54 AM
VIPERA v1.2.1 is here!! 🐍🐍🐍
Our workflow for SARS-CoV-2 intra-patient evolution analysis now fully supports Snakemake 8/9 (with dedicated CI tests), BIONJ trees, richer reports, added config parameters, modular Snakefiles and more! 🧪👉 github.com/PathoGenOmics-Lab/VIPERA
Our workflow for SARS-CoV-2 intra-patient evolution analysis now fully supports Snakemake 8/9 (with dedicated CI tests), BIONJ trees, richer reports, added config parameters, modular Snakefiles and more! 🧪👉 github.com/PathoGenOmics-Lab/VIPERA
@ahmig.es presented the poster "Expanding the scope of evolution reporting and analysis: from intra patient dynamics to outbreaks" at MCEB 2025 in Granada thanks to the funding @bcbhubcsic.bsky.social and @ageinves.bsky.social.
May 27, 2025 at 10:13 AM
@ahmig.es presented the poster "Expanding the scope of evolution reporting and analysis: from intra patient dynamics to outbreaks" at MCEB 2025 in Granada thanks to the funding @bcbhubcsic.bsky.social and @ageinves.bsky.social.
Reposted by PathoGenOmics Lab
Just back from MCEB 2025 in Granada! I presented our year-long work expanding VIPERA🐍 to help us better track pathogen evolution, here at @pathogenomics.bsky.social - @i2sysbio.bsky.social. I learned so much and returned full of ideas! Thanks to @bcbhubcsic.bsky.social for funding my attendance! 🧪
May 20, 2025 at 2:55 PM
Just back from MCEB 2025 in Granada! I presented our year-long work expanding VIPERA🐍 to help us better track pathogen evolution, here at @pathogenomics.bsky.social - @i2sysbio.bsky.social. I learned so much and returned full of ideas! Thanks to @bcbhubcsic.bsky.social for funding my attendance! 🧪
Reposted by PathoGenOmics Lab
Today, I2SysBio researchers were busy with #scienceoutreach activities at #Expociencia. Here are photos of the Pathogenomics lab @pathogenomics.bsky.social explaning in a playful way how our immune system works 🧬🖥🦠🧫🧪
Nuestro 4to año superado con creces, #expociencia2025 @pathogenomics.bsky.social @i2sysbio.bsky.social
May 10, 2025 at 7:25 PM
Today, I2SysBio researchers were busy with #scienceoutreach activities at #Expociencia. Here are photos of the Pathogenomics lab @pathogenomics.bsky.social explaning in a playful way how our immune system works 🧬🖥🦠🧫🧪
Reposted by PathoGenOmics Lab
Nuestro 4to año superado con creces, #expociencia2025 @pathogenomics.bsky.social @i2sysbio.bsky.social
May 10, 2025 at 7:17 PM
Nuestro 4to año superado con creces, #expociencia2025 @pathogenomics.bsky.social @i2sysbio.bsky.social
🔬 Beca JAE Intro en Bioinformática
Desarrolla HaploScope, una pipeline híbrida (Illumina + Nanopore/PacBio) para reconstrucción de haplotipos bacterianos y virales en @i2sysbio.bsky.social
Código: JAEINT25_EX_1603
🗓️ Solicita hasta 2 mayo
🔗 rb.gy/c6c8p2
#Bioinformática #Nextflow #JAEIntro #CSIC #TFM
Desarrolla HaploScope, una pipeline híbrida (Illumina + Nanopore/PacBio) para reconstrucción de haplotipos bacterianos y virales en @i2sysbio.bsky.social
Código: JAEINT25_EX_1603
🗓️ Solicita hasta 2 mayo
🔗 rb.gy/c6c8p2
#Bioinformática #Nextflow #JAEIntro #CSIC #TFM
April 4, 2025 at 11:14 AM
🔬 Beca JAE Intro en Bioinformática
Desarrolla HaploScope, una pipeline híbrida (Illumina + Nanopore/PacBio) para reconstrucción de haplotipos bacterianos y virales en @i2sysbio.bsky.social
Código: JAEINT25_EX_1603
🗓️ Solicita hasta 2 mayo
🔗 rb.gy/c6c8p2
#Bioinformática #Nextflow #JAEIntro #CSIC #TFM
Desarrolla HaploScope, una pipeline híbrida (Illumina + Nanopore/PacBio) para reconstrucción de haplotipos bacterianos y virales en @i2sysbio.bsky.social
Código: JAEINT25_EX_1603
🗓️ Solicita hasta 2 mayo
🔗 rb.gy/c6c8p2
#Bioinformática #Nextflow #JAEIntro #CSIC #TFM
Reposted by PathoGenOmics Lab
Today: Online link for World TB Day symposium 9-5 GMT: lshtm.zoom.us/j/92519123639. Programme information at ucl.ac.uk/tb/events/wo...
March 24, 2025 at 8:28 AM
Today: Online link for World TB Day symposium 9-5 GMT: lshtm.zoom.us/j/92519123639. Programme information at ucl.ac.uk/tb/events/wo...
🧬 Estudiamos la genética tras la compatibilidad patógeno-hospedador en tuberculosis (laboratorios BSL2/BSL3). Dale play al vídeo: ¡que lo contagioso sea la ciencia! #EndTB #DíaMundialTuberculosis, Desde @csic.es, @ptisg.bsky.social, @i2sysbio.bsky.social y @paururo.bsky.social
March 24, 2025 at 9:45 AM
🧬 Estudiamos la genética tras la compatibilidad patógeno-hospedador en tuberculosis (laboratorios BSL2/BSL3). Dale play al vídeo: ¡que lo contagioso sea la ciencia! #EndTB #DíaMundialTuberculosis, Desde @csic.es, @ptisg.bsky.social, @i2sysbio.bsky.social y @paururo.bsky.social
🦠 ¿Amigos o enemigos? La infección por tuberculosis depende de la compatibilidad patógeno-hospedador. Si encajan bien, la bacteria prospera; si no, fracasa. ¡Cuestión de genética! #EndTB #DíaMundialTuberculosis
March 24, 2025 at 9:42 AM
🦠 ¿Amigos o enemigos? La infección por tuberculosis depende de la compatibilidad patógeno-hospedador. Si encajan bien, la bacteria prospera; si no, fracasa. ¡Cuestión de genética! #EndTB #DíaMundialTuberculosis
🦠 Friends or foes? Tuberculosis infection depends on host-pathogen compatibility. If they're genetically compatible, bacteria thrive; if not, they fail. It’s all about matching genes! #EndTB #WorldTBDay
March 24, 2025 at 9:41 AM
🦠 Friends or foes? Tuberculosis infection depends on host-pathogen compatibility. If they're genetically compatible, bacteria thrive; if not, they fail. It’s all about matching genes! #EndTB #WorldTBDay
🔬 On World TB Day, we show you how we study tuberculosis genomes safely in BSL2/BSL3 labs to understand and stop its spread. Hit play—spread science, not TB! #EndTB #WorldTBDay @i2sysbio.bsky.social & @paururo.bsky.social,
March 24, 2025 at 9:35 AM
🔬 On World TB Day, we show you how we study tuberculosis genomes safely in BSL2/BSL3 labs to understand and stop its spread. Hit play—spread science, not TB! #EndTB #WorldTBDay @i2sysbio.bsky.social & @paururo.bsky.social,
Visit to I2SysBio by ESTALMAT, the programme of mathematical talent promotion www.i2sysbio.es/communicatio...
i2sysbio -
www.i2sysbio.es
March 3, 2025 at 1:07 PM
Visit to I2SysBio by ESTALMAT, the programme of mathematical talent promotion www.i2sysbio.es/communicatio...
Reposted by PathoGenOmics Lab
#ESTALMAT is a project of the Spanish Royal Academy of Sciences @raciencias.bsky.social for detection and encouragement of mathematical talent in 12-13 years old students. They visited our research institite to learn about #DNA 🧪💻🧬 #outreach @javierbuceta.bsky.social @pathogenomics.bsky.social
February 23, 2025 at 6:54 PM
#ESTALMAT is a project of the Spanish Royal Academy of Sciences @raciencias.bsky.social for detection and encouragement of mathematical talent in 12-13 years old students. They visited our research institite to learn about #DNA 🧪💻🧬 #outreach @javierbuceta.bsky.social @pathogenomics.bsky.social
Check out our tools for genomic analisis at github.com/PathoGenOmic...
• get_MNV: Reclassifies SNVs as MNVs and predicts amino acid changes.
• snpick: SNP extraction for large alignments.
• VIPERA: Workflow for SARS-CoV-2 evolution.
• mycolorsTB: R color palette for M. tuberculosis.
• get_MNV: Reclassifies SNVs as MNVs and predicts amino acid changes.
• snpick: SNP extraction for large alignments.
• VIPERA: Workflow for SARS-CoV-2 evolution.
• mycolorsTB: R color palette for M. tuberculosis.
November 22, 2024 at 8:03 AM
Check out our tools for genomic analisis at github.com/PathoGenOmic...
• get_MNV: Reclassifies SNVs as MNVs and predicts amino acid changes.
• snpick: SNP extraction for large alignments.
• VIPERA: Workflow for SARS-CoV-2 evolution.
• mycolorsTB: R color palette for M. tuberculosis.
• get_MNV: Reclassifies SNVs as MNVs and predicts amino acid changes.
• snpick: SNP extraction for large alignments.
• VIPERA: Workflow for SARS-CoV-2 evolution.
• mycolorsTB: R color palette for M. tuberculosis.
I2SysBio joins World Antimicrobial Resistance Awareness Week
www.uv.es/institute-in...
www.uv.es/institute-in...
I2SysBio joins World Antimicrobial Resistance Awareness Week
Antimicrobial resistance (AMR) occurs when microorganisms become unresponsive to antimicrobial agents, making it difficult to treat infections and increasing health risks. Several lines of research at...
www.uv.es
November 21, 2024 at 12:22 PM
I2SysBio joins World Antimicrobial Resistance Awareness Week
www.uv.es/institute-in...
www.uv.es/institute-in...
Reposted by PathoGenOmics Lab
New bioinformatic tool SNPick for detection of SNPs developed at @i2sysbio.bsky.social @pathogenomics.bsky.social 🦠🔬🧫🧬🖥
checkout SNPick A fast and memory-efficient tool for SNP extraction from genomic alignments.
@i2sysbio.bsky.social available as well in bioconda bioconda.github.io/recipes/snpi... @pathogenomics.bsky.social
@i2sysbio.bsky.social available as well in bioconda bioconda.github.io/recipes/snpi... @pathogenomics.bsky.social
November 20, 2024 at 5:36 PM
New bioinformatic tool SNPick for detection of SNPs developed at @i2sysbio.bsky.social @pathogenomics.bsky.social 🦠🔬🧫🧬🖥