Liz Ortiz de Ora
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ortizdeora.bsky.social
Liz Ortiz de Ora
@ortizdeora.bsky.social
Microbiologist. Wholobiontist. Molecular and Cell Biologist.
Postdoc in the Wiles lab @UCIrvine.
Interested in illuminating the invisible connections of the gut microbiome within cross-kingdom interactions.
Pinned
I am thrilled to share the first manuscript from the Wiles lab! We present "Phollow", an in vivo phage-tagging approach that enables direct observation of phage outbreaks with single-virion resolution by live imaging. Here some highlights 👇 www.nature.com/articles/s41...
Phollow reveals in situ phage transmission dynamics in the zebrafish gut microbiome at single-virion resolution
Nature Microbiology - ‘Phollow’ is a live imaging-based fluorescence tagging approach that can track phage replication and spread in situ with single-virion resolution.
www.nature.com
Reposted by Liz Ortiz de Ora
Expression level of anti-phage defence systems controls a trade-off between protection range and autoimmunity
By Nitzan Aframian and Avigdor Eldar.
www.nature.com/articles/s41...
Expression level of anti-phage defence systems controls a trade-off between protection range and autoimmunity - Nature Microbiology
The authors examine several defense systems and find that increased expression enhances their protection range, albeit at a cost of autoimmunity.
www.nature.com
July 26, 2025 at 6:59 AM
Reposted by Liz Ortiz de Ora
1/16 New pre-print from the Sternberg Lab!
We uncover how temperate phages can use RNA-guided transcription factors to remodel the flagellar composition of their bacterial host and enhance their fitness.
Find the preprint and full story here: tinyurl.com/mshwjd77
July 24, 2025 at 7:58 PM
Reposted by Liz Ortiz de Ora
We took the day off from the lab and spent all day in Paradise Valley, Montana on the Yellowstone River
July 25, 2025 at 1:36 AM
Reposted by Liz Ortiz de Ora
E. coli prophages encode an arsenal of defense systems to protect against temperate phages: Cell Host & Microbe www.cell.com/cell-host-mi...
E. coli prophages encode an arsenal of defense systems to protect against temperate phages
Bacteria contain an array of immune systems, with many yet to be discovered. Brenes and Laub isolate temperate phages from diverse E. coli strains, enabling identification of 17 conserved, prophage-en...
www.cell.com
June 1, 2025 at 3:21 PM
🤯
🚨New paper!

A prophage-encoded sRNA limits lytic phage infection in adherent-invasive E. coli.

Huge thanks to members of the Round Lab, @duerkoplab.bsky.social, Wiedenheft Lab, and phage legend Sherwood Casjens.

#microsky 🦠🧫🧪🧬

www.biorxiv.org/content/10.1...
May 7, 2025 at 2:38 PM
We’re thrilled to be featured on the May cover of Nature Microbiology... And our Research Briefing is out now—check it out, it’s 🔥! www.nature.com/articles/s41...
May 6, 2025 at 7:18 PM
Reposted by Liz Ortiz de Ora
🚨OUT NOW 🚨

Phollow Reveals In Situ Phage Transmission Dynamics in the Zebrafish Gut Microbiome at Single-Virion Resolution 🦠🐟

#MicroSky #MicrobiomeSky

www.nature.com/articles/s41...
Phollow reveals in situ phage transmission dynamics in the zebrafish gut microbiome at single-virion resolution - Nature Microbiology
‘Phollow’ is a live imaging-based fluorescence tagging approach that can track phage replication and spread in situ with single-virion resolution.
www.nature.com
April 25, 2025 at 2:24 PM
I am thrilled to share the first manuscript from the Wiles lab! We present "Phollow", an in vivo phage-tagging approach that enables direct observation of phage outbreaks with single-virion resolution by live imaging. Here some highlights 👇 www.nature.com/articles/s41...
Phollow reveals in situ phage transmission dynamics in the zebrafish gut microbiome at single-virion resolution
Nature Microbiology - ‘Phollow’ is a live imaging-based fluorescence tagging approach that can track phage replication and spread in situ with single-virion resolution.
www.nature.com
April 18, 2025 at 6:38 PM
Reposted by Liz Ortiz de Ora
Legitmately thrilled to share our latest work, in which @fernpizza.bsky.social solved an experimental challenge in plasmid biology as old as the field: measuring how plasmids compete and evolve within individual cells!
February 21, 2025 at 8:42 PM
Reposted by Liz Ortiz de Ora
Curious about how the gut microbiome modulates the neurological health of pregnant women and their offspring? Check out my recent review with @pipethero.bsky.social out now @jclinical-invest.bsky.social! 🦠🤰👶🧠

www.jci.org/articles/vie...
JCI - The microbiome as a modulator of neurological health across the maternal-offspring interface
www.jci.org
February 17, 2025 at 9:51 PM
Reposted by Liz Ortiz de Ora
February 7, 2025 at 3:47 PM
Reposted by Liz Ortiz de Ora
In the literature of domestication and microbiomes there seems to be the expectation that: domestication should lead to the loss of microbiome diversity and host-control. Alejandra Hernandez-Teran and I were both skeptical of both, so we decided to see what we know so far (1/6)
shorturl.at/FHY9H
Plant domestication does not reduce diversity in root microbiomes
Domestication has profoundly shaped human civilization and the genetic makeup of numerous plant and animal species. While the effects of plant domestication at the genetic and phenotypic levels are well-documented, its impact on plant microbiome remains less understood. Root microbiomes play crucial roles in nutrient acquisition, pathogen defense, and biotic stress tolerance, yet the influence of domestication on their diversity and assembly is still debated. Two primary hypotheses have been proposed: 1) the reduction in microbial diversity resulting from the domestication process, and 2) the diminished ability of host plants to control their microbiomes. To evaluate these hypotheses, we conducted a meta-analysis of multiple crops, comparing the root microbiomes of domesticated plants and their wild relatives. Our results indicate that the effects of domestication are species-specific and context-dependent, with most domesticated plants exhibiting increased microbial diversity and more structured communities, while others show no significant change. Overall, this study provides evidence that plant domestication does not lead to a uniform reduction in microbial diversity or a consistently diminished ability of plants to influence their microbiomes. Based on these findings, we discuss new perspectives and the need for future studies incorporating native soils and host genetic variation in such experiments, analyzing not only diversity but also microbiome function, and considering how root morphology might affect microbiome recruitment. Finally, we highlight the need for research on the potential adaptive or maladaptive consequences that introgression between wild and domesticated plants could have from a microbiome perspective. ### Competing Interest Statement The authors have declared no competing interest.
doi.org
January 18, 2025 at 1:44 AM
Reposted by Liz Ortiz de Ora
So Excited to share the newest @biorxivpreprint preprint from the #Nicholaslab Congrats Naveena my 1st #gradstudent on this work. T cells are necessary for development of PCOS reproductive symptoms in a letrozole-induced mouse model of PCOS | bioRxiv www.biorxiv.org/content/10.1...
T cells are necessary for development of PCOS reproductive symptoms in a letrozole-induced mouse model of PCOS
Polycystic ovary syndrome (PCOS) is a complex condition with clear genetic susceptibilities that impact the heterogeneous clinical presentation of symptoms and severity through unknown mechanisms. Chr...
www.biorxiv.org
January 14, 2025 at 1:33 AM
Reposted by Liz Ortiz de Ora
Thursday! Time for a new #MattersMicrobialepisode! Episode #73 with with Dr. Travis Wiles of UC Irvine about directly visualizing the dynamics of the gut microbiome! Filled with #OMG and #WTM moments. PLEASE spread the #GoodMicrobialWord! @bunsen_B @microbe.tv

youtu.be/P9UExZIjH_M?...
January 9, 2025 at 11:28 PM
Reposted by Liz Ortiz de Ora
Friends, please help spread the word about our microbiology REU program at Montana State University.
www.montana.edu/mbi/reu/

Each student receives a stipend ($7000 for 10 wks). Travel compensation, room, and board are also provided.

Details in the attached pic--Feb 13 deadline
🧫🧪🦠#microsky
January 6, 2025 at 9:13 PM
Reposted by Liz Ortiz de Ora
Just finished recording Episode #73 of #MattersMicrobial with Dr. Travis Wiles of UC Irvine. Such an exciting conversation about visualizing the microbiome and observing changes in real time. Wow. @bunsenb @univpugetsound @ASMicrobiology
January 3, 2025 at 9:36 PM
Reposted by Liz Ortiz de Ora
Pervasive phosphorylation by phage T7 kinase disarms bacterial defenses https://www.biorxiv.org/content/10.1101/2024.12.20.629319v1
December 21, 2024 at 7:16 AM
Reposted by Liz Ortiz de Ora
Keeping your symbiosis genes on a plasmid is a smart move if you have multiple potential hosts. Here a gut bacterial symbiont, but same is true for N-fixing Rhizobia.
www.science.org/doi/10.1126/...
A conserved bacterial genetic basis for commensal-host specificity
Animals selectively acquire specific symbiotic gut bacteria from their environments that aid host fitness. To colonize, a symbiont must locate its niche and sustain growth within the gut. Adhesins are...
www.science.org
December 7, 2024 at 1:17 PM