Marcin J. Suskiewicz
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msuskiewicz.bsky.social
Marcin J. Suskiewicz
@msuskiewicz.bsky.social
Structural biologist and biochemist. CNRS researcher at CBM Orléans @cbm-upr4301.bsky.social. Interested in protein modifications & interactions. Also husband, dad of 2, friend, ☧. Personal website: msuskiewicz.github.io
Pinned
SUMO interactions: the 1st of two reviews which Aanchal (@origichals.bsky.social), El Hadji, and I have recently written on non-covalent interactions of SUMO is now out. The 1st covers interactions with E1, E2, and deSUMOylating enzymes; the 2nd - on interactions with SIMs etc. - will appear soon.
Non-covalent SUMO interactions with (de)conjugation enzymes
SUMOylation – a protein post-translational modification (PTM) related to ubiquitylation – involves the reversible covalent attachment of the small ubiquitin-like modifier (SUMO) to proteins. During th...
portlandpress.com
Reposted by Marcin J. Suskiewicz
People can appreciate science without AI?

Sorry to dunk on this but someone has to break up the chorus - qed isn't ready @biorxivpreprint.bsky.social

Do you implicitly want to send people to AI spin over the paper itself? Not what we're fighting for in #SciPub #AcademicSky #ResearchIntegrity
IT'S HAPPENING! 💥 I'm psyched to launch the collaboration between @qedscience.bsky.social & @openrxiv.bsky.social @biorxivpreprint.bsky.social! Preprint + q.e.d = your science is out there, and anyone can appreciate it. Let's care about making discoveries, and not on “getting published” (1/3) 👇
November 11, 2025 at 7:52 AM
A lovely example of how extensive cryoEM data classification can provide new insights into the recognition of the nucleosome by nucleosome-modifying proteins.
ALC1 Finds a New Foothold on the Nucleosome's Super-Groove https://www.biorxiv.org/content/10.1101/2025.11.10.687450v1
November 11, 2025 at 10:11 AM
Reposted by Marcin J. Suskiewicz
Design stable, folded proteins using only the 10 "ancient" amino acids.

www.biorxiv.org/content/10.1...
October 31, 2025 at 7:40 PM
Reposted by Marcin J. Suskiewicz
Inspired by the AI conference hosted by the Danish Presidency of the EU I've written a probably too long piece about my own shift from a multi-variate/bayesian genomicist to an AI aligned genomicist / biologist.

www.linkedin.com/pulse/though...
Thoughts on AI, Take 2
Further thoughts about AI brought together for me by the AI Science Summit organized by the European Commission and the Danish Presidency of the Council of the EU 2025 - in lovely Copenhagen - this ti...
www.linkedin.com
November 7, 2025 at 5:40 PM
Reposted by Marcin J. Suskiewicz
Here you can read our full review paper on the interplay between ADP-ribosylation and ubiquitination, with special focus on dual, hybrid modification ADPr-Ub:
pubmed.ncbi.nlm.nih.gov/41065402/
October 9, 2025 at 10:07 PM
Reposted by Marcin J. Suskiewicz
Excited to share the peer-reviewed version of our work, now online in @embojournal.org! Big thanks to our reviewers and @hvodermaier.bsky.social for facilitating this process. Looking forward to continuing this fun collaboration with @michaelnadbio.bsky.social!
www.embopress.org/doi/full/10....
October 30, 2025 at 3:33 PM
Reposted by Marcin J. Suskiewicz
this looks very interesting with numerous implications for nuclear biology and gene expression.

Mapping chromatin structure at base-pair resolution unveils a unified model of cis-regulatory element interactions: Cell www.cell.com/cell/fulltex...
Mapping chromatin structure at base-pair resolution unveils a unified model of cis-regulatory element interactions
Li et al. apply base-pair resolution Micro Capture-C ultra to map chromatin contacts between individual motifs within cis-regulatory elements and reveal a unified model of biophysically mediated enhan...
www.cell.com
November 9, 2025 at 5:07 PM
Reposted by Marcin J. Suskiewicz
Synthetic fluorophores enhance live-cell microscopy, enabling nanoscale to macroscale imaging with improved resolution. PMID:41188619, Nat Chem Biol 2025, @nchembio https://doi.org/10.1038/s41589-025-02038-4 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Synthetic fluorophores for live-cell fluorescence microscopy and biosensing | Nature Chemical Biology
Fluorescence microscopy has become an indispensable tool to investigate the dynamics of macromolecules directly in living cells on length scales ranging from the nanoscale via super-resolution microscopy (SRM) to the macroscale by light sheet technology. Advances in these microscopy techniques and the desire to perform experiments with high spatial and temporal resolution in living cells increase the requirements imposed on the fluorophores used. Tailor-made synthetic small-molecule fluorophores in combination with innovative labeling strategies help to overcome these challenges and continue to push the boundaries in live-cell microscopy. This Review discusses important advances in improving the performance of synthetic fluorophores for live-cell applications and how synergistic effects can be produced by using clever labeling strategies. We detail how synthetic fluorophores advance different microscopy modalities including live-cell SRM and showcase how they can be implemented into bi
doi.org
November 8, 2025 at 10:00 PM
Reposted by Marcin J. Suskiewicz
In light of the recent news, I did a thread a couple of years ago about some #classicpaper in #molecularbiology

I kept a record if anyone is interested

⬇️

aninfinityofhypotheses.wordpress.com/2018/09/28/c...
#Classicpaper
Recently I started a Twitter thread highlighting a couple of seminal discoveries in molecular biology going back in the 40’s 50’s #classicpaper. I received many positive feedback and the thread was…
aninfinityofhypotheses.wordpress.com
November 9, 2025 at 7:22 PM
Reposted by Marcin J. Suskiewicz
An Asgard archaeon with internal membrane compartments

Brilliant study led by @fmacleod.bsky.social and Andriko von Kügelgen. Tight collaboration with @buzzbaum.bsky.social and lab. Congrats to all authors!

www.biorxiv.org/content/10.1...
November 7, 2025 at 10:44 AM
Reposted by Marcin J. Suskiewicz
New paper alert! Scientists in Clemens Plaschka’s lab at the IMP and @juliusbrennecke.bsky.social's lab at
@imbavienna.bsky.social solved a decade-old puzzle, uncovering how the information molecule mRNA travels from the cell’s nucleus to its periphery. More: bit.ly/4nHcvys
November 6, 2025 at 4:04 PM
Reposted by Marcin J. Suskiewicz
‼️ Excited to share our new paper out now in @science.org ‼️

We describe a new tetrameric RAD51 paralog complex – XRCC3-RAD51C-RAD51D-XRCC2 – which caps the end of RAD51 filaments.

Link: www.science.org/doi/epdf/10....

Thread ⬇️ (1/8)
November 7, 2025 at 10:15 AM
Reposted by Marcin J. Suskiewicz
Reposted by Marcin J. Suskiewicz
My prediction is that LLM peer review will slow down science. It will do this for precisely the same reasons that contemporary peer review does and some extra ones. Start by reading @hansonmark.bsky.social thread below, then read on. 🧵
Just tried q.e.d. by @odedrechavi.bsky.social et al. with a few papers including by myself & others where I knew a claim within was flawed based on a misunderstanding of the signal.

1) it was impressive. I see what the hype is about.
2) it hallucinated.

www.qedscience.com

Overly long #SciPub🧵 1/n
q.e.d Science
Critical Thinking AI for constructive criticism and science evaluation
www.qedscience.com
November 6, 2025 at 9:30 PM
Reposted by Marcin J. Suskiewicz
1/New paper from Zheng Wu, Phong Nguyen et al. @cri-utsw.bsky.social shows how cells balance the two pathways that produce purine nucleotides: de novo purine biosynthesis (DNPB) and purine salvage. The surprising mechanism involves NUDT5, a Nudix hydrolase

www.science.org/doi/10.1126/...
NUDT5 regulates purine metabolism and thiopurine sensitivity by interacting with PPAT
Cells generate purine nucleotides through de novo purine biosynthesis (DNPB) and purine salvage. Purine salvage represses DNPB to prevent excessive purine nucleotide synthesis through mechanisms that ...
www.science.org
November 6, 2025 at 7:01 PM
Reposted by Marcin J. Suskiewicz
𝗖𝗮𝗻 𝗰𝗲𝗹𝗹𝘀 𝗲𝘃𝗲𝗿 𝘁𝗿𝘂𝗹𝘆 𝗿𝗲𝗰𝗼𝘃𝗲𝗿 𝗳𝗿𝗼𝗺 𝗗𝗡𝗔 𝗱𝗮𝗺𝗮𝗴𝗲?Excited to share our new study “Repair of DNA double-strand breaks leaves heritable impairment to genome function”, revealing DNA repair’s hidden cost, out now @science.org tinyurl.com/5n6zw3ye. Led by @sbantele.bsky.social and Jiri Lukas.🧵👇1/n
Repair of DNA double-strand breaks leaves heritable impairment to genome function
Upon DNA breakage, a genomic locus undergoes alterations in three-dimensional chromatin architecture to facilitate signaling and repair. Although cells possess mechanisms to repair damaged DNA, it is ...
tinyurl.com
November 6, 2025 at 11:05 PM
Reposted by Marcin J. Suskiewicz
HT-PELSA, a new proteomics tool by EMBL researchers, processes samples 100x faster and works directly with complex crude cell, tissue, and bacterial lysates – developments which could accelerate drug discovery and basic biological research 💊

🔗 www.embl.org/news/science...
November 5, 2025 at 10:09 AM
Reposted by Marcin J. Suskiewicz
Reposted by Marcin J. Suskiewicz
Micrograd: a pedagogical implementation of neural networks using a reverse-mode automatic differentiation engine.

https://hyperdoc.khinsen.net/94FE4-micrograd

I have written this as a real-life example of explorable explanations in HyperDoc.

Feedback welcome at […]
Original post on scholar.social
scholar.social
November 3, 2025 at 1:21 PM
SUMO interactions: the 1st of two reviews which Aanchal (@origichals.bsky.social), El Hadji, and I have recently written on non-covalent interactions of SUMO is now out. The 1st covers interactions with E1, E2, and deSUMOylating enzymes; the 2nd - on interactions with SIMs etc. - will appear soon.
Non-covalent SUMO interactions with (de)conjugation enzymes
SUMOylation – a protein post-translational modification (PTM) related to ubiquitylation – involves the reversible covalent attachment of the small ubiquitin-like modifier (SUMO) to proteins. During th...
portlandpress.com
November 5, 2025 at 1:44 PM
Reposted by Marcin J. Suskiewicz
Our November issue is available at journals.iucr.org/d/issues/202...

On the cover: recent studies demonstrate that the range of samples suitable for cryo-EM single-particle analysis is expanding towards increasingly more native samples. Read the review at shorturl.at/mitjg
November 5, 2025 at 1:29 PM
In this life one should Perutz high goals, but ultimately settle for what one Kendrew (R. E. Dickerson)
November 5, 2025 at 9:52 AM
Reposted by Marcin J. Suskiewicz
Next 2 months will be busy with Thesis Defences at CBM,
save the date for:
03/11 : Anna Novak
05/11 : Clémence Couton
28/11 : Adrien Uguen
01/12 : Sebastian Gfellner
01/12 : Ayoub Medjmedj
10/12 : Chloé Lamelli
15/12 : Lucija Mance
15/12 : Emmanuel Douez
18/12 : Lylia Azzoug
...
🍿
October 20, 2025 at 6:07 AM
Reposted by Marcin J. Suskiewicz
Neat trick if you polycolonal ab's suck. Incubate them with fixed cells with a KO of your protein of interest, then spin. Protocol here: www.med.upenn.edu/markslab/ass...
I was amazed how well it worked on first try (I'm sure that I can completely eliminate unspecific bands)
#WesternBlot #cellsky
October 2, 2025 at 5:11 PM