Jonathan Pruneda
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jnpruneda.bsky.social
Jonathan Pruneda
@jnpruneda.bsky.social
Associate Professor at Oregon Health & Science University studying microbial interference in host ubiquitin signaling. Current ASM Northwest Branch President. Formerly @UWBiochemistry and @MRC_LMB.
Reposted by Jonathan Pruneda
Coming soon –with poster submission deadline Feb 2nd– #KSUbiquitin26
Our editor hvodermaier.bsky.social is looking forward to being there!
hubs.la/Q03TCqzV0
The Ubiquitin Family in Biology and Disease | Keystone Symposia
Join us at the Keystone Symposia on The Ubiquitin Family in Biology and Disease, February 2026, in Banff, with field leaders!
hubs.la
January 28, 2026 at 3:46 PM
Reposted by Jonathan Pruneda
Applications are open for PREP Bio at the University of Oregon! A great opportunity for postbacs looking for additional research experience while preparing for graduate school. More here: cas.uoregon.edu/UO-PREP-Bio
UO PREP Biology program
cas.uoregon.edu
January 28, 2026 at 10:29 PM
Reposted by Jonathan Pruneda
Friends, please help spread the word about our microbiology REU program at Montana State University.
www.montana.edu/mbi/reu/

Each student receives a stipend ($7000 for 10 wks). Travel compensation, room, and board are also provided.

Details in the attached pic--Feb 14 deadline
🧫🧪🦠#microsky
January 28, 2026 at 7:46 PM
Join us in Leiden for this exciting meeting on Pathogen Immunity and Signalling. The February 1st abstract submission deadline is fast approaching! Please help spread the news!
January 29, 2026 at 2:27 AM
Reposted by Jonathan Pruneda
It's my pleasure to announce the next Science Art Summit!

There's gonna be balloons, sculptures, comics, animations, illustrations & installations. Tag along, it's free!

Registration at www.scienceartsummit.com, retweets appreciated – the more the merrier
January 28, 2026 at 8:30 AM
Reposted by Jonathan Pruneda
We are looking for a new RA to join our team working on host-pathogen interactions during Salmonella infection. The appointment is for two years and you will join a diverse team, using cell and protein biochemistry to further our understanding of pathogenesis. my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
January 26, 2026 at 4:20 PM
Reposted by Jonathan Pruneda
Excited to announce the upcoming 2026 Microbial Toxins and Pathogenicity GRC and GRS meeting taking place July 12 - 17, 2026 at Waterville Valley in New Hampshire. This meeting will be chaired by yours truly and co-chaired by
@sunnyshinlab.bsky.social www.grc.org/microbial-to...
2026 Microbial Toxins and Pathogenicity Conference GRC
The 2026 Gordon Research Conference on Microbial Toxins and Pathogenicity will be held in Waterville Valley, New Hampshire. Apply today to reserve your spot.
www.grc.org
January 24, 2026 at 1:57 PM
Reposted by Jonathan Pruneda
Reposted by Jonathan Pruneda
Hello world! I am excited to announce my lab is open at the University of Utah in the Department of Biochemistry. We are looking for scientists at all levels interested in studying host-virus interactions in both bacteria and animals. Come join us in beautiful Utah! (photo is 10 steps from lab)
January 22, 2026 at 10:06 PM
Reposted by Jonathan Pruneda
The applications to ComSciCon PNW 2026 are officially open. They close on January 31st, so don't wait to apply.

lnkd.in/gBg_qsfd

Please help spread the word in your community and boost this post by liking and reposting.
January 23, 2026 at 3:55 AM
Reposted by Jonathan Pruneda
I’m stoked to share my postdoc work with @sunnyshinlab.bsky.social, a collaborative effort with @metabailism.bsky.social & Brian Goldspiel, aided by many valued collaborators: Environmental Amino Acid Sensing Regulates the Rate of ASC Translation and NLRP3 Inflammasome Assembly. Some big takeaways:
Environmental Amino Acid Sensing Regulates the Rate of ASC Translation and NLRP3 Inflammasome Assembly https://www.biorxiv.org/content/10.64898/2026.01.16.699988v1
January 21, 2026 at 3:11 AM
Reposted by Jonathan Pruneda
Did you miss the original abstract deadline? No worries, we’ve extended it to January 30th! Don’t miss your chance to be part of an exciting meeting highlighting the cutting edge of the field.
Just two more days to submit abstracts for the "PARP Family and ADP-ribosylation CSHL meeting. We have an amazing lineup of speakers. The majority of speakers are selected from abstracts. Don't miss out! meetings.cshl.edu/meetings.asp...
The PARP Family & ADP-ribosylation
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
meetings.cshl.edu
January 21, 2026 at 6:14 PM
Reposted by Jonathan Pruneda
Mapping the ultrastructural topology of septin cage entrapment

PhD studentship with @carolynmoores1.bsky.social

Direct link here: www.lshtm.ac.uk/study/fees-a...
2026-27 Bloomsbury Colleges PhD Studentships | LSHTM
The Bloomsbury Colleges group was set up in 2004 and consists of five institutions: Birkbeck, London School of Hygiene & Tropical Medicine (LSHTM), the Royal Veterinary College (RVC), the School of
www.lshtm.ac.uk
January 20, 2026 at 1:47 PM
Reposted by Jonathan Pruneda
I’m thrilled to share our work on phage triggers of the bacterial immune system in its final form @natmicrobiol.nature.com www.nature.com/articles/s41...
A phage protein screen identifies triggers of the bacterial innate immune system - Nature Microbiology
A library of 400 phage protein-coding genes is used to find a trove of antiphage systems, revealing systems that target tail fibre and major capsid proteins.
www.nature.com
January 18, 2026 at 10:45 PM
Reposted by Jonathan Pruneda
Just two more days to submit abstracts for the "PARP Family and ADP-ribosylation CSHL meeting. We have an amazing lineup of speakers. The majority of speakers are selected from abstracts. Don't miss out! meetings.cshl.edu/meetings.asp...
The PARP Family & ADP-ribosylation
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
meetings.cshl.edu
January 15, 2026 at 4:02 AM
Reposted by Jonathan Pruneda
📝 Online now - the Review "Chemical biology approaches for protein tagging in mammalian cells" from Kaitlyn Toy, Jenna Beyer, and @gburslem.bsky.social.

#SelfLabelingProteinTags #GeneticCodeExpansion #ncAAs #SplitInteins #SpatiotemporalControl

Read it here 👉 authors.elsevier.com/a/1mRdq3S6Gf...
January 14, 2026 at 1:54 PM
Reposted by Jonathan Pruneda
New year, new preprint! 🎊

We are excited to share our recent work on #E3 ligase regulation in #metabolism!

www.biorxiv.org/content/10.6...

#ubiquitin #targetedproteindegradation #chemicalbiology

1/6
A CK2-FBXW11 kinase-E3 ubiquitin ligase cascade is a metabolic sensor regulating Tryptophan 2,3-dioxygenase stability
Small molecules toggling the ubiquitin-proteasome system (UPS) are powerful regulators of protein degradation. Yet, mechanistic knowledge of how endogenous ligands gate UPS decisions remains rudimentary. Here, we define control of UPS access to Tryptophan-2,3-dioxygenase (TDO2), which converts the essential amino acid tryptophan (Trp) to N-formylkynurenine. When Trp concentrations are limiting, TDO2 is degraded to avert tryptophanemia. Using CRISPRi screening and biochemistry, we identify a CK2-FBXW11 kinase-E3 ligase cascade that generates and recognizes tandem TDO2 phosphodegrons when not protected by Trp. Trp binding to an exosite safeguards TDO2 from phosphorylation-dependent ubiquitylation. Effects of Trp analogs on CK2-FBXW11-dependent ubiquitylation indicated that the indole, amino, and carboxylate groups are necessary for substrate shielding. Cryo-EM reveals how these moieties order a region proximal to the phosphodegrons; without Trp, this segment is flexible, enabling phosphorylation-coupled ubiquitylation. Overall, our data uncovered an endogenous small molecule allosterically stabilizing its own metabolizing enzyme through protection from a phosphorylation-ubiquitylation cascade. ### Competing Interest Statement B.A.S. is a member of the scientific advisory boards of Proxygen and Lyterian. The other authors declare no competing interests. Max Planck Society, https://ror.org/01hhn8329 European Union, ERC AdvG, UPSmeetMet, 101098161 to BAS Boehringer Ingelheim Fonds, https://ror.org/00dkye506
www.biorxiv.org
January 13, 2026 at 1:49 PM
Reposted by Jonathan Pruneda
Mark your calendars for a new round of @globalimmuno.bsky.social !
Honored and excited to be part of the lineup this year!
2026 is here! We’re excited to share Global Immunotalks first semester poster, featuring an outstanding lineup!

Please share and help us spread the word!
January 12, 2026 at 9:54 PM
Reposted by Jonathan Pruneda
Excited to share our first collaborative paper of the year- a review on the emerging roles of lipids in flavivirus infection, now published in @cp-trendsmicrobiol.bsky.social. Congrats to Judah (postdoc) for spearheading the work!

@ohsunews.bsky.social

www.sciencedirect.com/science/arti...
January 12, 2026 at 8:12 PM
Reposted by Jonathan Pruneda
Join us for the #Ubiquitin & Friends Symposium 2026, April 29-30, in Vienna!
Fantastic guest speakers👇 & many slots for talks from abstracts, flash-talks & posters. Lots of opportunities to network. Register now to save your spot!
➡️ www.protein-degradation.org/symposium/
#ubfriends2026
January 10, 2026 at 12:47 AM
Reposted by Jonathan Pruneda
Incredibly excited to be taking part in the EMBO Workshop Pathogen Immunity & Signalling. Thanks to Annemarthe van der Veen, @kajastelab.bsky.social, @iannaconelab.bsky.social, @maurogaya.bsky.social, @manellab.bsky.social, @jnpruneda.bsky.social, Jan Rehwinkel & Mads Gyrd-Hansen for organising.
January 9, 2026 at 9:13 AM
Reposted by Jonathan Pruneda
Learn more about the interplay between ADP-ribosylation and ubiquitination: PARG regulates proteasomal degradation of the ADP-ribosyl hydrolase TARG1 by preventing PAR-dependent ubiquitination mediated by the E3 ligases HUWE1 and TRIP12
www.sciencedirect.com/science/arti...
PARG regulates the proteasomal degradation of TARG1
ADP-ribosylation (ADPr) is a reversible modification of macromolecules critical for the regulation of genome stability, stress responses, and proteost…
www.sciencedirect.com
January 8, 2026 at 8:24 PM
Reposted by Jonathan Pruneda
When RNA Degradation 🤝 meets 🤝 Protein Degradation! tinyurl.com/E3TDMD In a collaboration of @bartellab.bsky.social and Schulman lab, we show that, in target-directed microRNA degradation (TDMD), 2-RNA-factors recruit an E3 ligase and induce the degradation of not only a protein but also RNA (1/5).
January 6, 2026 at 8:05 AM
Reposted by Jonathan Pruneda
The E3 ubiquitin ligase mechanism specifying target-directed microRNA degradation www.biorxiv.org/content/10.64898/2026.01.05.697729v1 #cryoem
January 6, 2026 at 12:00 PM
Reposted by Jonathan Pruneda
‼️For our final invited speaker interview, we talked with the amazing Titia Sixma about her work on the role of ubiquitin in DNA regulation, and some #AusUb2025 highlights. Thank you to everyone who came, it was an amazing conference and a great chance to see the breadth of global ubiquitin research!
December 20, 2025 at 10:53 AM