Kamil Hupało
@kamilhupalo.bsky.social
Postdoctoral researcher @ University of Duisburg-Essen
| #eDNA #parasites #freshwater @impact-parasites.bsky.social
| Studying biodiversity & ecology with #DNA
| #eDNA #parasites #freshwater @impact-parasites.bsky.social
| Studying biodiversity & ecology with #DNA
Pinned
Kamil Hupało
@kamilhupalo.bsky.social
· May 20
Aquatic Parasitology: Ecological and Environmental Concepts and Implications of Marine and Freshwater Parasites
A unique open access collection on ecological and environmental parasitology in marine and freshwater. Covers climate change and parasite conservation.
link.springer.com
🚨 Thrilled and honoured to lead the chapter on using #eDNA for studying aquatic #parasites - a part of just-published book on #openaccess Aquatic Parasitology led by @berndsures.bsky.social & @nicojsmit.bsky.social with top parasitologists contributing!
link.springer.com/book/10.1007...
More ⬇️🧵
link.springer.com/book/10.1007...
More ⬇️🧵
Reposted by Kamil Hupało
If you think the seasons are feeling… different, you may be right.
Our new review in Science (@science.org) shows that Earth’s changing rhythms could have major and underestimated consequences for life on Earth. 🌍🧵
www.science.org/doi/10.1126/...
Our new review in Science (@science.org) shows that Earth’s changing rhythms could have major and underestimated consequences for life on Earth. 🌍🧵
www.science.org/doi/10.1126/...
Ecological and evolutionary consequences of changing seasonality
Climate change and other anthropogenic drivers alter seasonal regimes across freshwater, terrestrial, and marine biomes. Seasonal patterns affect ecological and evolutionary processes at different eco...
www.science.org
May 29, 2025 at 10:41 PM
If you think the seasons are feeling… different, you may be right.
Our new review in Science (@science.org) shows that Earth’s changing rhythms could have major and underestimated consequences for life on Earth. 🌍🧵
www.science.org/doi/10.1126/...
Our new review in Science (@science.org) shows that Earth’s changing rhythms could have major and underestimated consequences for life on Earth. 🌍🧵
www.science.org/doi/10.1126/...
🚨 Thrilled and honoured to lead the chapter on using #eDNA for studying aquatic #parasites - a part of just-published book on #openaccess Aquatic Parasitology led by @berndsures.bsky.social & @nicojsmit.bsky.social with top parasitologists contributing!
link.springer.com/book/10.1007...
More ⬇️🧵
link.springer.com/book/10.1007...
More ⬇️🧵
Aquatic Parasitology: Ecological and Environmental Concepts and Implications of Marine and Freshwater Parasites
A unique open access collection on ecological and environmental parasitology in marine and freshwater. Covers climate change and parasite conservation.
link.springer.com
May 20, 2025 at 7:48 AM
🚨 Thrilled and honoured to lead the chapter on using #eDNA for studying aquatic #parasites - a part of just-published book on #openaccess Aquatic Parasitology led by @berndsures.bsky.social & @nicojsmit.bsky.social with top parasitologists contributing!
link.springer.com/book/10.1007...
More ⬇️🧵
link.springer.com/book/10.1007...
More ⬇️🧵
Reposted by Kamil Hupało
🚨 EntoSieve is now published in Molecular Ecology Resources: Fast and accurate size-sorting of bulk insect samples! Perfect for boosting DNA megabarcoding & metabarcoding projects. 🧬🔬 DIY low-cost device, gentle on specimens and yet efficient 🦋🐞 here: onlinelibrary.wiley.com/doi/full/10....
March 14, 2025 at 3:03 PM
🚨 EntoSieve is now published in Molecular Ecology Resources: Fast and accurate size-sorting of bulk insect samples! Perfect for boosting DNA megabarcoding & metabarcoding projects. 🧬🔬 DIY low-cost device, gentle on specimens and yet efficient 🦋🐞 here: onlinelibrary.wiley.com/doi/full/10....
Reposted by Kamil Hupało
Considering a scientific career in Spain? Grants to Encourage the Incorporation of Established Talent 'ATRAE Program' 2025
www.aei.gob.es/en/announcem...
www.aei.gob.es/en/announcem...
www.aei.gob.es
May 6, 2025 at 9:06 AM
Considering a scientific career in Spain? Grants to Encourage the Incorporation of Established Talent 'ATRAE Program' 2025
www.aei.gob.es/en/announcem...
www.aei.gob.es/en/announcem...
Reposted by Kamil Hupało
A very up-to-date review led by the brilliant @hollybroadhurst.bsky.social on the applications of #eDNA and iDNA for monitoring terrestrial and semi-aquatic mammals! The beginnings, the milestones, where we're heading. Water, soil, air, the inverts, all here! onlinelibrary.wiley.com/doi/abs/10.1...
From Water to Land: A Review on the Applications of Environmental DNA and Invertebrate‐Derived DNA for Monitoring Terrestrial and Semi‐Aquatic Mammals
This review explores global applications of environmental DNA (eDNA) and invertebrate-derived DNA (iDNA) for surveying terrestrial and semi-aquatic mammals. By providing a comprehensive overview of t...
onlinelibrary.wiley.com
May 5, 2025 at 9:36 AM
A very up-to-date review led by the brilliant @hollybroadhurst.bsky.social on the applications of #eDNA and iDNA for monitoring terrestrial and semi-aquatic mammals! The beginnings, the milestones, where we're heading. Water, soil, air, the inverts, all here! onlinelibrary.wiley.com/doi/abs/10.1...
Reposted by Kamil Hupało
What I wish I knew: 33 thoughts for early career researchers
Reflections I wish someone had shared with me early in my research career.
predirections.substack.com/p/what-i-wis...
Reflections I wish someone had shared with me early in my research career.
predirections.substack.com/p/what-i-wis...
What I wish I knew: 33 thoughts for early career researchers
Thirty three reflections I wish someone had shared with me early in my research career.
predirections.substack.com
April 29, 2025 at 3:08 AM
What I wish I knew: 33 thoughts for early career researchers
Reflections I wish someone had shared with me early in my research career.
predirections.substack.com/p/what-i-wis...
Reflections I wish someone had shared with me early in my research career.
predirections.substack.com/p/what-i-wis...
Reposted by Kamil Hupało
#eDNA #eRNA #omics people: would you support the formation of a European Society for Environmental Omics #ESEO? Please share your thoughts in the questionnaire & spread this message! 🙏
Thank you, the ESEO core team!
docs.google.com/forms/d/e/1F...
Thank you, the ESEO core team!
docs.google.com/forms/d/e/1F...
European Society for Environmental Omics (ESEO)
Dear Environmental Omics enthusiasts!
At the AquaEcOmics meeting in Evian (March, 2025), an international group of 35 experts discussed the future of regular European meetings and collaborative effor...
docs.google.com
April 29, 2025 at 11:28 AM
#eDNA #eRNA #omics people: would you support the formation of a European Society for Environmental Omics #ESEO? Please share your thoughts in the questionnaire & spread this message! 🙏
Thank you, the ESEO core team!
docs.google.com/forms/d/e/1F...
Thank you, the ESEO core team!
docs.google.com/forms/d/e/1F...
Reposted by Kamil Hupało
Lake Geneva #eDNA sample taken! 🥳 Including a demo of @alpineedna.bsky.social‘s new sampling kit! @florianaltermatt.bsky.social @kamilhupalo.bsky.social @leeselab.bsky.social @grace-kotnik.bsky.social @tiinalaamanen.bsky.social @francoiskeck.bsky.social @aquaecomics.mastodon.social.ap.brid.gy
March 19, 2025 at 1:15 PM
Lake Geneva #eDNA sample taken! 🥳 Including a demo of @alpineedna.bsky.social‘s new sampling kit! @florianaltermatt.bsky.social @kamilhupalo.bsky.social @leeselab.bsky.social @grace-kotnik.bsky.social @tiinalaamanen.bsky.social @francoiskeck.bsky.social @aquaecomics.mastodon.social.ap.brid.gy
Very happy to be at @aquaecomics.mastodon.social.ap.brid.gy conference! So many great studies showcasing innovations in DNA-based biodiversity studies! Great to be among innovators & presenting our (e)DNA-based approach for fish parasites @impact-parasites.bsky.social including the fish smoothies!
@kamilhupalo.bsky.social introducing the „fish smoothie approach“ for detecting fish parasites! #AquaEcOmics @aquaecomics.mastodon.social.ap.brid.gy
March 18, 2025 at 2:20 PM
Very happy to be at @aquaecomics.mastodon.social.ap.brid.gy conference! So many great studies showcasing innovations in DNA-based biodiversity studies! Great to be among innovators & presenting our (e)DNA-based approach for fish parasites @impact-parasites.bsky.social including the fish smoothies!
My first contribution to aquatic parasitology! 🤓🙌 We propose a new method using fish smoothies for DNA-based ID & detection of fish parasites 🤯🐟🦠 still room for improvement, but the method is highly comparable with morphological ID; 🔜 #metabarcoding
➡️Check out the preprint: doi.org/10.21203/rs....
➡️Check out the preprint: doi.org/10.21203/rs....
A new method for rapid detection and identification of fish parasites through whole-fish homogenization
Background: The global biodiversity crisis, driven by anthropogenic activities, signals the onset of the sixth mass extinction in Earth’s history. The biodiversity decline is particularly evident in f...
doi.org
March 17, 2025 at 1:53 PM
My first contribution to aquatic parasitology! 🤓🙌 We propose a new method using fish smoothies for DNA-based ID & detection of fish parasites 🤯🐟🦠 still room for improvement, but the method is highly comparable with morphological ID; 🔜 #metabarcoding
➡️Check out the preprint: doi.org/10.21203/rs....
➡️Check out the preprint: doi.org/10.21203/rs....
Reposted by Kamil Hupało
What are the best #artificialintelligence tools for #research? Nature’s guide
www.nature.com/articles/d41...
www.nature.com/articles/d41...
What are the best AI tools for research? Nature’s guide
There are many large language models to choose from; some excel at coding, whereas others are better for synthesizing information.
www.nature.com
February 17, 2025 at 8:04 PM
What are the best #artificialintelligence tools for #research? Nature’s guide
www.nature.com/articles/d41...
www.nature.com/articles/d41...
Reposted by Kamil Hupało
Another position in @crc-resist.bsky.social, a postdoc position based in Senckenberg (Gelnhausen). If you are interested in large-scale data analysis, this position will boost your career. You will work in a very successful lab that publishes many high-ranking papers every year.
February 13, 2025 at 8:22 AM
Another position in @crc-resist.bsky.social, a postdoc position based in Senckenberg (Gelnhausen). If you are interested in large-scale data analysis, this position will boost your career. You will work in a very successful lab that publishes many high-ranking papers every year.
Reposted by Kamil Hupało
Super happy our paper on #eDNA #metabarcoding of North Sea fish using @nanoporetech.com sequencing is finally published in Molecular Ecology Resources: onlinelibrary.wiley.com/doi/10.1111/...
The Long and the Short of It: Nanopore‐Based eDNA Metabarcoding of Marine Vertebrates Works; Sensitivity and Species‐Level Assignment Depend on Amplicon Lengths
To monitor the effect of nature restoration projects in North Sea ecosystems, accurate and intensive biodiversity assessments are vital. DNA-based techniques and especially environmental (e)DNA metab....
onlinelibrary.wiley.com
February 11, 2025 at 9:36 AM
Super happy our paper on #eDNA #metabarcoding of North Sea fish using @nanoporetech.com sequencing is finally published in Molecular Ecology Resources: onlinelibrary.wiley.com/doi/10.1111/...
Reposted by Kamil Hupało
Just released version 1.6.0 of the APSCALE pipeline. This update includes improved log writing and added failsafe features for better handling of invalid settings. Check it out on GitHub:#apscale #metabarcoding #pipeline
github.com/DominikBuchner…
github.com/DominikBuchner…
GitHub - DominikBuchner/apscale: Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data - DominikBuchner/apscale
github.com
January 29, 2025 at 1:38 PM
Just released version 1.6.0 of the APSCALE pipeline. This update includes improved log writing and added failsafe features for better handling of invalid settings. Check it out on GitHub:#apscale #metabarcoding #pipeline
github.com/DominikBuchner…
github.com/DominikBuchner…
Reposted by Kamil Hupało
Out now in @nature.com! Our comprehensive meta-analysis of global terrestrial and marine genetic diversity demonstrates rapid loss of genetic diversity and identifies conservation interventions that could mitigate this process
www.nature.com/articles/s41...
🧪🌍🦤🧬
#consgen #PopGen
www.nature.com/articles/s41...
🧪🌍🦤🧬
#consgen #PopGen
Global meta-analysis shows action is needed to halt genetic diversity loss - Nature
A comprehensive meta-analysis of global terrestrial and marine genetic diversity covering more than three decades of research demonstrates rapid loss of genetic diversity and identifies conservation i...
www.nature.com
January 29, 2025 at 4:15 PM
Out now in @nature.com! Our comprehensive meta-analysis of global terrestrial and marine genetic diversity demonstrates rapid loss of genetic diversity and identifies conservation interventions that could mitigate this process
www.nature.com/articles/s41...
🧪🌍🦤🧬
#consgen #PopGen
www.nature.com/articles/s41...
🧪🌍🦤🧬
#consgen #PopGen
Reposted by Kamil Hupało
Save the date: 📅
Am 6.12.2024 findet ab 18:00 der diesjährige #ScienceSlam des Studiengangs MSc #Biodiversität statt. 🎤🔬🧑🔬
Im Audimax R14 der der #UDE in Essen @unidue.bsky.social
Unterstützt vom #ZWU
Eintritt frei; Gäste herzlich willkommen. 🎉
#Biologie #Studium #Scicomm #Universität
Am 6.12.2024 findet ab 18:00 der diesjährige #ScienceSlam des Studiengangs MSc #Biodiversität statt. 🎤🔬🧑🔬
Im Audimax R14 der der #UDE in Essen @unidue.bsky.social
Unterstützt vom #ZWU
Eintritt frei; Gäste herzlich willkommen. 🎉
#Biologie #Studium #Scicomm #Universität
November 24, 2024 at 6:43 PM
Save the date: 📅
Am 6.12.2024 findet ab 18:00 der diesjährige #ScienceSlam des Studiengangs MSc #Biodiversität statt. 🎤🔬🧑🔬
Im Audimax R14 der der #UDE in Essen @unidue.bsky.social
Unterstützt vom #ZWU
Eintritt frei; Gäste herzlich willkommen. 🎉
#Biologie #Studium #Scicomm #Universität
Am 6.12.2024 findet ab 18:00 der diesjährige #ScienceSlam des Studiengangs MSc #Biodiversität statt. 🎤🔬🧑🔬
Im Audimax R14 der der #UDE in Essen @unidue.bsky.social
Unterstützt vom #ZWU
Eintritt frei; Gäste herzlich willkommen. 🎉
#Biologie #Studium #Scicomm #Universität
Reposted by Kamil Hupało
New paper that may be of interest to ecologists studying global change, disturbances, biodiversity, ecosystem functioning, or response diversity: doi.org/10.1038/s414...
Variability of functional and biodiversity responses to perturbations is predictable and informative - Nature Communications
Measures of biodiversity and ecosystem functioning show variable responses to perturbations, complicating the prediction of responses to global change. This study shows that the variability of communi...
doi.org
December 2, 2024 at 7:45 AM
New paper that may be of interest to ecologists studying global change, disturbances, biodiversity, ecosystem functioning, or response diversity: doi.org/10.1038/s414...
Reposted by Kamil Hupało
Do you want to know how the Biodiversa+ IMPACT project is helping to integrate parasites into biodiversity monitoring? Check out www.nina.no/english/IMPACT
@biodiversaplus.bsky.social
@biodiversaplus.bsky.social
December 3, 2024 at 10:02 AM
Do you want to know how the Biodiversa+ IMPACT project is helping to integrate parasites into biodiversity monitoring? Check out www.nina.no/english/IMPACT
@biodiversaplus.bsky.social
@biodiversaplus.bsky.social