Katharina Imkeller
@imkeller.bsky.social
Biophysicist interested in immunology.
Professor at Goethe University Frankfurt | Frankfurt Cancer Institute.
https://agimkeller.github.io
Professor at Goethe University Frankfurt | Frankfurt Cancer Institute.
https://agimkeller.github.io
Reposted by Katharina Imkeller
Great news: The #LOEWE Center Frankfurt Cancer Institute @goetheuni.bsky.social will continue to receive funding from the state of Hesse! 🎉
12 mio € for two more years – a strong signal for the importance of #translational #cancer #research in Frankfurt.
Thank you Hesse and everyone involved!!
12 mio € for two more years – a strong signal for the importance of #translational #cancer #research in Frankfurt.
Thank you Hesse and everyone involved!!
November 11, 2025 at 7:53 PM
Great news: The #LOEWE Center Frankfurt Cancer Institute @goetheuni.bsky.social will continue to receive funding from the state of Hesse! 🎉
12 mio € for two more years – a strong signal for the importance of #translational #cancer #research in Frankfurt.
Thank you Hesse and everyone involved!!
12 mio € for two more years – a strong signal for the importance of #translational #cancer #research in Frankfurt.
Thank you Hesse and everyone involved!!
Reposted by Katharina Imkeller
Im @loewe-fci.bsky.social arbeiten Forschende gemeinsam an translationaler #Krebsforschung. Nun wird das #FCI weiter vom Land Hessen gefördert: Wissenschaftsminister Timon Gremmels hat heute einen Förderbescheid für die Jahre 2026/27 überreicht.
🔗 Mehr: aktuelles.uni-frankfurt.de/allgemein/12...
🔗 Mehr: aktuelles.uni-frankfurt.de/allgemein/12...
November 10, 2025 at 3:24 PM
Im @loewe-fci.bsky.social arbeiten Forschende gemeinsam an translationaler #Krebsforschung. Nun wird das #FCI weiter vom Land Hessen gefördert: Wissenschaftsminister Timon Gremmels hat heute einen Förderbescheid für die Jahre 2026/27 überreicht.
🔗 Mehr: aktuelles.uni-frankfurt.de/allgemein/12...
🔗 Mehr: aktuelles.uni-frankfurt.de/allgemein/12...
Reposted by Katharina Imkeller
There are two complementary views of scientific advance: the "heroes" view, individual geniuses driving unique one-of-a-kind advances, and the "multiple discovery" or zeitgeist view, that the time is ripe for a discovery, and the details of who makes it first, where, and how are, well, details.(1/3)
November 8, 2025 at 9:23 AM
There are two complementary views of scientific advance: the "heroes" view, individual geniuses driving unique one-of-a-kind advances, and the "multiple discovery" or zeitgeist view, that the time is ripe for a discovery, and the details of who makes it first, where, and how are, well, details.(1/3)
Reposted by Katharina Imkeller
📆 For those who haven't turned the page on their calendar yet, here's a reminder.
In November, we look at a colorful piece of microscopy art by Jadranka Macas (Institute of Neurology (Edinger Institute), University Hospital Frankfurt).
Read more about it here:
👉 nfdi4bioimage.de/resources-an...
In November, we look at a colorful piece of microscopy art by Jadranka Macas (Institute of Neurology (Edinger Institute), University Hospital Frankfurt).
Read more about it here:
👉 nfdi4bioimage.de/resources-an...
November 6, 2025 at 9:07 AM
📆 For those who haven't turned the page on their calendar yet, here's a reminder.
In November, we look at a colorful piece of microscopy art by Jadranka Macas (Institute of Neurology (Edinger Institute), University Hospital Frankfurt).
Read more about it here:
👉 nfdi4bioimage.de/resources-an...
In November, we look at a colorful piece of microscopy art by Jadranka Macas (Institute of Neurology (Edinger Institute), University Hospital Frankfurt).
Read more about it here:
👉 nfdi4bioimage.de/resources-an...
Reposted by Katharina Imkeller
📢 We are announcing the Adaptive Immune Profiling Challenge 2025!
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
🗓️ Launches Nov 5 on @kaggle.com
More Info: uio-bmi.github.io/adaptive_imm...
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
🗓️ Launches Nov 5 on @kaggle.com
More Info: uio-bmi.github.io/adaptive_imm...
October 22, 2025 at 7:09 PM
📢 We are announcing the Adaptive Immune Profiling Challenge 2025!
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
🗓️ Launches Nov 5 on @kaggle.com
More Info: uio-bmi.github.io/adaptive_imm...
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
🗓️ Launches Nov 5 on @kaggle.com
More Info: uio-bmi.github.io/adaptive_imm...
Our new publication in @cp-immunity.bsky.social: Tertiary lymphoid structures with signs of functional adaptive immune responses in a subset of human gliomas. Association with longer overall patient survival and more immune-permissive tumor microenvironment.
doi.org/10.1016/j.im...
doi.org/10.1016/j.im...
October 22, 2025 at 7:36 AM
Our new publication in @cp-immunity.bsky.social: Tertiary lymphoid structures with signs of functional adaptive immune responses in a subset of human gliomas. Association with longer overall patient survival and more immune-permissive tumor microenvironment.
doi.org/10.1016/j.im...
doi.org/10.1016/j.im...
Reposted by Katharina Imkeller
Tertiary lymphoid structures in a subset of gliomas that show signs of functional adaptive immune activation and are associated with longer overall patient survival and an immune-permissive tumor microenvironment @cp-immunity.bsky.social
www.cell.com/immunity/ful...
www.cell.com/immunity/ful...
October 21, 2025 at 3:22 PM
Tertiary lymphoid structures in a subset of gliomas that show signs of functional adaptive immune activation and are associated with longer overall patient survival and an immune-permissive tumor microenvironment @cp-immunity.bsky.social
www.cell.com/immunity/ful...
www.cell.com/immunity/ful...
Reposted by Katharina Imkeller
Reminder 👇
Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy?
⏲️ 3 year position
📍 Bolzano, 🇮🇹
👉 apply if you like:
- #rstats SW development
- @bioconductor.bsky.social
- large-scale #metabolomics data analysis
- hiking ⛰️
🔗 bit.ly/46AMawx
Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy?
⏲️ 3 year position
📍 Bolzano, 🇮🇹
👉 apply if you like:
- #rstats SW development
- @bioconductor.bsky.social
- large-scale #metabolomics data analysis
- hiking ⛰️
🔗 bit.ly/46AMawx
October 6, 2025 at 2:29 PM
Reminder 👇
Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy?
⏲️ 3 year position
📍 Bolzano, 🇮🇹
👉 apply if you like:
- #rstats SW development
- @bioconductor.bsky.social
- large-scale #metabolomics data analysis
- hiking ⛰️
🔗 bit.ly/46AMawx
Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy?
⏲️ 3 year position
📍 Bolzano, 🇮🇹
👉 apply if you like:
- #rstats SW development
- @bioconductor.bsky.social
- large-scale #metabolomics data analysis
- hiking ⛰️
🔗 bit.ly/46AMawx
Reposted by Katharina Imkeller
🚀 Postdoc / Bioinformatician in Computational Multi-Omics for Precision Oncology at Heidelberg University Hospital: karriere.klinikum.uni-heidelberg.de/index.php?ac...
A great short-term opportunity for anyone looking for a bridge position between PhD, postdoc, or the next career step.
A great short-term opportunity for anyone looking for a bridge position between PhD, postdoc, or the next career step.
Postdoc / Bioinformatician – Computational Multi-Omics for Precision Oncology (m/f/d)
Pflichtfelder sind mit einem (*) markiert.
karriere.klinikum.uni-heidelberg.de
October 1, 2025 at 1:24 PM
🚀 Postdoc / Bioinformatician in Computational Multi-Omics for Precision Oncology at Heidelberg University Hospital: karriere.klinikum.uni-heidelberg.de/index.php?ac...
A great short-term opportunity for anyone looking for a bridge position between PhD, postdoc, or the next career step.
A great short-term opportunity for anyone looking for a bridge position between PhD, postdoc, or the next career step.
Reposted by Katharina Imkeller
EuroBioC2025 is in full swing here in Barcelona!
Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow!
#EuroBioC2025 #Bioconductor #OpenScience #Community
Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow!
#EuroBioC2025 #Bioconductor #OpenScience #Community
September 18, 2025 at 9:53 AM
EuroBioC2025 is in full swing here in Barcelona!
Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow!
#EuroBioC2025 #Bioconductor #OpenScience #Community
Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow!
#EuroBioC2025 #Bioconductor #OpenScience #Community
Reposted by Katharina Imkeller
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change.
Ie: it's not us (Samtools team)! Be warned
Ie: it's not us (Samtools team)! Be warned
September 15, 2025 at 8:40 AM
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change.
Ie: it's not us (Samtools team)! Be warned
Ie: it's not us (Samtools team)! Be warned
PhD position available in my group in Frankfurt. Explore adaptive immune responses in metastatic colorectal cancer using multi-omics and AIRR profiling. #TRR417 @loewe-fci.bsky.social
georg-speyer-haus.de/karriere/ste...
georg-speyer-haus.de/karriere/ste...
Georg-Speyer-Haus: Doctoral Researcher Positions in Colorectal Cancer Research
georg-speyer-haus.de
September 10, 2025 at 8:29 AM
PhD position available in my group in Frankfurt. Explore adaptive immune responses in metastatic colorectal cancer using multi-omics and AIRR profiling. #TRR417 @loewe-fci.bsky.social
georg-speyer-haus.de/karriere/ste...
georg-speyer-haus.de/karriere/ste...
Reposted by Katharina Imkeller
Our paper identifying evidence of off-target probe binding in the 10x Genomics Xenium Breast Gene Panel is now available as a reviewed preprint at #eLife
elifesciences.org/reviewed-pre...
We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇
elifesciences.org/reviewed-pre...
We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇
August 29, 2025 at 4:36 PM
Our paper identifying evidence of off-target probe binding in the 10x Genomics Xenium Breast Gene Panel is now available as a reviewed preprint at #eLife
elifesciences.org/reviewed-pre...
We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇
elifesciences.org/reviewed-pre...
We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇
Reposted by Katharina Imkeller
Reminder 📣
still time to apply to the position in my team!
- statistical modeling
- large scale #metabolomics and #proteomics data
- #rstats , #python
📍 Bolzano, ⛰️, 🇮🇹
🔗https://eurac.onboard.org/jobs/Q4301nGV
still time to apply to the position in my team!
- statistical modeling
- large scale #metabolomics and #proteomics data
- #rstats , #python
📍 Bolzano, ⛰️, 🇮🇹
🔗https://eurac.onboard.org/jobs/Q4301nGV
August 18, 2025 at 11:10 AM
Reminder 📣
still time to apply to the position in my team!
- statistical modeling
- large scale #metabolomics and #proteomics data
- #rstats , #python
📍 Bolzano, ⛰️, 🇮🇹
🔗https://eurac.onboard.org/jobs/Q4301nGV
still time to apply to the position in my team!
- statistical modeling
- large scale #metabolomics and #proteomics data
- #rstats , #python
📍 Bolzano, ⛰️, 🇮🇹
🔗https://eurac.onboard.org/jobs/Q4301nGV
Reposted by Katharina Imkeller
🔬 PhD Position in Bioinformatics!
Join my group at Heidelberg University (lu-group-ukhd.github.io) to study AML dormancy & therapy resistance using multi-omics & single-cell data.
👉Apply or share: www.jobvector.de/job/bioinfor...
Join my group at Heidelberg University (lu-group-ukhd.github.io) to study AML dormancy & therapy resistance using multi-omics & single-cell data.
👉Apply or share: www.jobvector.de/job/bioinfor...
PhD Student Bioinformatics, Computational Biology (m/f/d)
Analyze bulk and single-cell multi-omics data generated from in vivo AML models
Curate and integrate public datasets (eg scRNA-seq) to derive prior knowledge on AML dormancy
Develop and apply integrat...
www.jobvector.de
July 22, 2025 at 8:03 AM
🔬 PhD Position in Bioinformatics!
Join my group at Heidelberg University (lu-group-ukhd.github.io) to study AML dormancy & therapy resistance using multi-omics & single-cell data.
👉Apply or share: www.jobvector.de/job/bioinfor...
Join my group at Heidelberg University (lu-group-ukhd.github.io) to study AML dormancy & therapy resistance using multi-omics & single-cell data.
👉Apply or share: www.jobvector.de/job/bioinfor...
Reposted by Katharina Imkeller
1/6 🧬 NEW COMMENTARY 🧬
Let’s talk about the challenges in immunoglobulin (IG) & T cell receptor (TR) gene nomenclature in the era of modern genomics.
A 🧵 on why it’s time to rethink how we name these genes—and what it means for immunogenetics.
#IGTR #Genomics #Immunology
Let’s talk about the challenges in immunoglobulin (IG) & T cell receptor (TR) gene nomenclature in the era of modern genomics.
A 🧵 on why it’s time to rethink how we name these genes—and what it means for immunogenetics.
#IGTR #Genomics #Immunology
June 28, 2025 at 8:42 AM
1/6 🧬 NEW COMMENTARY 🧬
Let’s talk about the challenges in immunoglobulin (IG) & T cell receptor (TR) gene nomenclature in the era of modern genomics.
A 🧵 on why it’s time to rethink how we name these genes—and what it means for immunogenetics.
#IGTR #Genomics #Immunology
Let’s talk about the challenges in immunoglobulin (IG) & T cell receptor (TR) gene nomenclature in the era of modern genomics.
A 🧵 on why it’s time to rethink how we name these genes—and what it means for immunogenetics.
#IGTR #Genomics #Immunology
Reposted by Katharina Imkeller
We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !
July 2, 2025 at 8:51 AM
We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !
Reposted by Katharina Imkeller
🌟 #MeetOurDataStewards #1: Ksenia Krooß
New to bioimage data? This workshop offers a practical introduction to @nfdi4bioimage.bsky.social and I3D:bio, common challenges and the OMERO platform. Learn about image analysis tools and how to select data repositories.
👉 zenodo.org/record/13861...
New to bioimage data? This workshop offers a practical introduction to @nfdi4bioimage.bsky.social and I3D:bio, common challenges and the OMERO platform. Learn about image analysis tools and how to select data repositories.
👉 zenodo.org/record/13861...
June 26, 2025 at 1:08 PM
🌟 #MeetOurDataStewards #1: Ksenia Krooß
New to bioimage data? This workshop offers a practical introduction to @nfdi4bioimage.bsky.social and I3D:bio, common challenges and the OMERO platform. Learn about image analysis tools and how to select data repositories.
👉 zenodo.org/record/13861...
New to bioimage data? This workshop offers a practical introduction to @nfdi4bioimage.bsky.social and I3D:bio, common challenges and the OMERO platform. Learn about image analysis tools and how to select data repositories.
👉 zenodo.org/record/13861...
Last chance to apply to this PhD position with @mlolab.bsky.social
We are recruiting a PhD student in Computational Biology to work on omics data and spatial integration in cellular immunotherapy of cancer. Joint project with the group of Florian Büttner. @loewe-fci.bsky.social
agimkeller.github.io/recruit.html
agimkeller.github.io/recruit.html
Open positions - AG Imkeller
agimkeller.github.io
March 27, 2025 at 7:41 AM
Last chance to apply to this PhD position with @mlolab.bsky.social
Reposted by Katharina Imkeller
🧬🖥️ #iHet code is available at: github.com/Computationa...
March 17, 2025 at 6:05 AM
🧬🖥️ #iHet code is available at: github.com/Computationa...
We are recruiting a PhD student in Computational Biology to work on omics data and spatial integration in cellular immunotherapy of cancer. Joint project with the group of Florian Büttner. @loewe-fci.bsky.social
agimkeller.github.io/recruit.html
agimkeller.github.io/recruit.html
Open positions - AG Imkeller
agimkeller.github.io
March 11, 2025 at 8:59 AM
We are recruiting a PhD student in Computational Biology to work on omics data and spatial integration in cellular immunotherapy of cancer. Joint project with the group of Florian Büttner. @loewe-fci.bsky.social
agimkeller.github.io/recruit.html
agimkeller.github.io/recruit.html
Interested in understanding what B cells do in brain tumors? We offer a Master's thesis project in molecular biology / tumor immunology. Apply and join us at Edinger Institute in #Frankfurt
@loewe-fci.bsky.social
agimkeller.github.io/recruit.html
@loewe-fci.bsky.social
agimkeller.github.io/recruit.html
Open positions - AG Imkeller
agimkeller.github.io
February 14, 2025 at 3:49 PM
Interested in understanding what B cells do in brain tumors? We offer a Master's thesis project in molecular biology / tumor immunology. Apply and join us at Edinger Institute in #Frankfurt
@loewe-fci.bsky.social
agimkeller.github.io/recruit.html
@loewe-fci.bsky.social
agimkeller.github.io/recruit.html
Reposted by Katharina Imkeller
Many women, one mission: LOEWE top research from Hesse. February 11: Women & Girls in Science Day. @tuda.bsky.social @jlugiessen.bsky.social @goetheuni.bsky.social @unikassel.bsky.social @unimarburg.bsky.social @thm.de
@synmikro.bsky.social @ciesek.bsky.social @susanneherold.bsky.social @sgn.one
@synmikro.bsky.social @ciesek.bsky.social @susanneherold.bsky.social @sgn.one
February 10, 2025 at 10:27 AM
Many women, one mission: LOEWE top research from Hesse. February 11: Women & Girls in Science Day. @tuda.bsky.social @jlugiessen.bsky.social @goetheuni.bsky.social @unikassel.bsky.social @unimarburg.bsky.social @thm.de
@synmikro.bsky.social @ciesek.bsky.social @susanneherold.bsky.social @sgn.one
@synmikro.bsky.social @ciesek.bsky.social @susanneherold.bsky.social @sgn.one
Reposted by Katharina Imkeller
Many women, one mission: LOEWE top research from Hesse. February 11: Women & Girls in Science Day. @tuda.bsky.social @jlugiessen.bsky.social @goetheuni.bsky.social @unikassel.bsky.social @unimarburg.bsky.social @thm.de
@synmikro.bsky.social @ciesek.bsky.social @susanneherold.bsky.social @sgn.one
@synmikro.bsky.social @ciesek.bsky.social @susanneherold.bsky.social @sgn.one
February 10, 2025 at 1:17 PM