Dr Cyril Pernet
@cyrilrpernet.bsky.social
NeuroInformatics, NeuroImaging, Stats #openscience #opendata #publicdata -- leading https://publicneuro.eu/
put my stuff on https://github.com/CPernet/
see also http://cpernet.github.io
--- pour mes amis francophone aussi: https://lavieen202025.github.io/
put my stuff on https://github.com/CPernet/
see also http://cpernet.github.io
--- pour mes amis francophone aussi: https://lavieen202025.github.io/
Reposted by Dr Cyril Pernet
We are pleased to announce that BIDS Extension Proposal 038 - Atlases is open for community review!
github.com/bids-standar...
The review period is open from November 10 - November 21.
#bids #neuroimaging
github.com/bids-standar...
The review period is open from November 10 - November 21.
#bids #neuroimaging
Community Review: BEP038 - Atlases and Templates · bids-standard bids-specification · Discussion #2250
We are pleased to announce the community review period for BIDS Extension Proposal (BEP) 038! BEP038 extends the BIDS standard to describe BIDS Derivatives datasets that are intended to be distribu...
github.com
November 10, 2025 at 3:30 PM
We are pleased to announce that BIDS Extension Proposal 038 - Atlases is open for community review!
github.com/bids-standar...
The review period is open from November 10 - November 21.
#bids #neuroimaging
github.com/bids-standar...
The review period is open from November 10 - November 21.
#bids #neuroimaging
-- a reviewer tells me 'the paper needs improved methodological transparency' -- we use open datasets, the tools are open sources, the analyses are notebooks you can re-run and hosted openly, should the answer be to F-off or what
November 7, 2025 at 9:16 AM
-- a reviewer tells me 'the paper needs improved methodological transparency' -- we use open datasets, the tools are open sources, the analyses are notebooks you can re-run and hosted openly, should the answer be to F-off or what
Reposted by Dr Cyril Pernet
"Reformation of science publishing: the Stockholm Declaration"
royalsocietypublishing.org/doi/full/10....
(i) Academia should resume control of publishing using non-profit publishing models (e.g. diamond open-access). 1/
royalsocietypublishing.org/doi/full/10....
(i) Academia should resume control of publishing using non-profit publishing models (e.g. diamond open-access). 1/
Reformation of science publishing: the Stockholm Declaration | Royal Society Open Science
Science relies on integrity and trustworthiness. But scientists under career pressure
are lured to purchase fake publications from ‘paper mills’ that use AI-generated data,
text and image fabrication....
royalsocietypublishing.org
November 7, 2025 at 3:07 AM
"Reformation of science publishing: the Stockholm Declaration"
royalsocietypublishing.org/doi/full/10....
(i) Academia should resume control of publishing using non-profit publishing models (e.g. diamond open-access). 1/
royalsocietypublishing.org/doi/full/10....
(i) Academia should resume control of publishing using non-profit publishing models (e.g. diamond open-access). 1/
how I feel sitting in large projects ... evaluation of projects remains based on articles and journals these are published in #AcademiaVsScience
November 5, 2025 at 9:06 AM
how I feel sitting in large projects ... evaluation of projects remains based on articles and journals these are published in #AcademiaVsScience
Reposted by Dr Cyril Pernet
We are very excited for Prof. Rafael Yuste’s keynote presentation at the #EBRAINSSummit2025!
His keynote “Neurotechnology: An Upcoming Revolution in Science, Medicine and Society” will take place on 9 December.
Register for the EBRAINS Summit here: summit2025.ebrains.eu/register-to-...
His keynote “Neurotechnology: An Upcoming Revolution in Science, Medicine and Society” will take place on 9 December.
Register for the EBRAINS Summit here: summit2025.ebrains.eu/register-to-...
November 4, 2025 at 11:13 AM
We are very excited for Prof. Rafael Yuste’s keynote presentation at the #EBRAINSSummit2025!
His keynote “Neurotechnology: An Upcoming Revolution in Science, Medicine and Society” will take place on 9 December.
Register for the EBRAINS Summit here: summit2025.ebrains.eu/register-to-...
His keynote “Neurotechnology: An Upcoming Revolution in Science, Medicine and Society” will take place on 9 December.
Register for the EBRAINS Summit here: summit2025.ebrains.eu/register-to-...
🆕 New open neuroimaging dataset released!
I’m happy to share that our Naturalistic Neuroimaging Database (NNDb3T+) is now publicly available! NNDb3T+ captures rich, multimodal brain activity in a naturalistic setting with 40 participants and over 160 hours of scanning!
I’m happy to share that our Naturalistic Neuroimaging Database (NNDb3T+) is now publicly available! NNDb3T+ captures rich, multimodal brain activity in a naturalistic setting with 40 participants and over 160 hours of scanning!
October 29, 2025 at 5:06 PM
can't wait
The OHBM Executive Office is hard at work getting ready for OHBM 2026 in Bordeaux. Preparation is well underway for an inspiring meeting in a truly historic city.
Join us June 14–18, 2026
Learn more about our visit by clicking the link in the comments.
#OHBM2026 #BrainMapping
Join us June 14–18, 2026
Learn more about our visit by clicking the link in the comments.
#OHBM2026 #BrainMapping
October 29, 2025 at 5:03 PM
can't wait
Reposted by Dr Cyril Pernet
𝗘𝗻𝗱 𝗼𝗳 𝘁𝗵𝗲 𝗲𝗺𝗽𝗶𝗿𝗲 𝗼𝗳 𝗻𝗲𝘂𝗿𝗼𝗻𝘀 𝗶𝗻 𝘁𝗵𝗲 𝗯𝗿𝗮𝗶𝗻??
Astrocytes in the regulation of fear memories!
www.nature.com/articles/s41...
#neuroskyence
h/t @claeneuro.bsky.social
Astrocytes in the regulation of fear memories!
www.nature.com/articles/s41...
#neuroskyence
h/t @claeneuro.bsky.social
The astrocytic ensemble acts as a multiday trace to stabilize memory - Nature
Emotional experience evokes signalling in astrocytes, which form an ensemble that is reinforced by secondary astrocytic state changes resulting from repeated experience, leading to memory stabilizatio...
www.nature.com
October 21, 2025 at 5:57 PM
𝗘𝗻𝗱 𝗼𝗳 𝘁𝗵𝗲 𝗲𝗺𝗽𝗶𝗿𝗲 𝗼𝗳 𝗻𝗲𝘂𝗿𝗼𝗻𝘀 𝗶𝗻 𝘁𝗵𝗲 𝗯𝗿𝗮𝗶𝗻??
Astrocytes in the regulation of fear memories!
www.nature.com/articles/s41...
#neuroskyence
h/t @claeneuro.bsky.social
Astrocytes in the regulation of fear memories!
www.nature.com/articles/s41...
#neuroskyence
h/t @claeneuro.bsky.social
Reposted by Dr Cyril Pernet
🗳️ Polls are OPEN for the 2025 @BIDSCommunity Steering Group Election!
We're electing two new members to help guide the future of BIDS. 📊✨
If you're a contributor, check your inbox for your ballot (let us know if you have not received it). Voting closes October 31st!
👉 Review candidates:
We're electing two new members to help guide the future of BIDS. 📊✨
If you're a contributor, check your inbox for your ballot (let us know if you have not received it). Voting closes October 31st!
👉 Review candidates:
Voter Pamphlet 2025 - BIDS Election
Election Information Packet 2025 Steering Group Candidate Summaries Alessio Giacomel I am an early career researcher currently working at the University Hospital in Frankfurt am Main. My background is...
docs.google.com
October 20, 2025 at 4:11 PM
🗳️ Polls are OPEN for the 2025 @BIDSCommunity Steering Group Election!
We're electing two new members to help guide the future of BIDS. 📊✨
If you're a contributor, check your inbox for your ballot (let us know if you have not received it). Voting closes October 31st!
👉 Review candidates:
We're electing two new members to help guide the future of BIDS. 📊✨
If you're a contributor, check your inbox for your ballot (let us know if you have not received it). Voting closes October 31st!
👉 Review candidates:
Reposted by Dr Cyril Pernet
Appearing soon: State-space trajectories and traveling waves following distraction, J of Cog. Neuro., in press.
A direct link between cortical spiking patterns moving through subspace and traveling waves propagating across the cortex. Preprint:
doi.org/10.1101/2024...
#neuroscience
A direct link between cortical spiking patterns moving through subspace and traveling waves propagating across the cortex. Preprint:
doi.org/10.1101/2024...
#neuroscience
State-space trajectories and traveling waves following distraction
Cortical activity shows the ability to recover from distractions. We analyzed neural activity from the prefrontal cortex (PFC) of monkeys performing working memory tasks with mid-memory-delay distract...
doi.org
October 9, 2025 at 5:48 PM
Appearing soon: State-space trajectories and traveling waves following distraction, J of Cog. Neuro., in press.
A direct link between cortical spiking patterns moving through subspace and traveling waves propagating across the cortex. Preprint:
doi.org/10.1101/2024...
#neuroscience
A direct link between cortical spiking patterns moving through subspace and traveling waves propagating across the cortex. Preprint:
doi.org/10.1101/2024...
#neuroscience
Reposted by Dr Cyril Pernet
Join OHBM in building a greener future! 🌍 Become our official Sustainability Sponsor and showcase your commitment to eco-friendly initiatives with branded water bottles, refill station signage, and QR codes linking to your sustainability pledge. Let’s make #OHBM2026 the most sustainable yet!
🔗 👇
🔗 👇
October 8, 2025 at 11:02 AM
Join OHBM in building a greener future! 🌍 Become our official Sustainability Sponsor and showcase your commitment to eco-friendly initiatives with branded water bottles, refill station signage, and QR codes linking to your sustainability pledge. Let’s make #OHBM2026 the most sustainable yet!
🔗 👇
🔗 👇
very cool indeed
Nice demo by Mark Lescroart @neuromdl.bsky.social on EPI imaging of a single #fMRI slice. Great for teaching! :)
vimeo.com/143701608?fl...
vimeo.com/143701608?fl...
fMRI_EPI_KspaceAcquisition_short
This is a demonstration of how a single slice of functional magnetic resonance imaging (fMRI) data is collected. Before this makes any sense, you will need to understand…
vimeo.com
October 3, 2025 at 12:13 PM
very cool indeed
Reposted by Dr Cyril Pernet
Je vous propose 5 comportements a adopter contre l'inflammation chronique youtu.be/0DiVTNZ-RuI
Le monde souffre-t-il vraiment d’inflammation chronique ?
YouTube video by La Vie En 2.0
youtu.be
October 3, 2025 at 8:44 AM
Je vous propose 5 comportements a adopter contre l'inflammation chronique youtu.be/0DiVTNZ-RuI
arxiv.org/abs/2509.15278 check that your metadata are 'private' i.e. that they do not leak personal information -- BIDSapp available 😀
Assessing metadata privacy in neuroimaging
The ethical and legal imperative to share research data without causing harm requires careful attention to privacy risks. While mounting evidence demonstrates that data sharing benefits science, legit...
arxiv.org
September 22, 2025 at 7:13 AM
arxiv.org/abs/2509.15278 check that your metadata are 'private' i.e. that they do not leak personal information -- BIDSapp available 😀
well a part a very few descent outlets, their summary is crap anyway AI or not
Glad Science collected this data (though the results are entirely unsurprising). GenAI cannot accurately summarize scientific papers, sacrificing accuracy for simplicity.
And shame on publishers who are pushing genAI summaries on readers. Great way to accelerate an epistemic apocalypse.
And shame on publishers who are pushing genAI summaries on readers. Great way to accelerate an epistemic apocalypse.
September 21, 2025 at 6:01 PM
well a part a very few descent outlets, their summary is crap anyway AI or not
Reposted by Dr Cyril Pernet
Launched in 2023, Imaging Neuroscience is now firmly established, with full indexing (PubMed, etc.) and 700 papers to date.
We're very happy to announce that we are able to reduce the APC to $1400.
Huge thanks to all authors, reviewers, editorial team+board, and MIT Press.
We're very happy to announce that we are able to reduce the APC to $1400.
Huge thanks to all authors, reviewers, editorial team+board, and MIT Press.
September 5, 2025 at 2:59 AM
Launched in 2023, Imaging Neuroscience is now firmly established, with full indexing (PubMed, etc.) and 700 papers to date.
We're very happy to announce that we are able to reduce the APC to $1400.
Huge thanks to all authors, reviewers, editorial team+board, and MIT Press.
We're very happy to announce that we are able to reduce the APC to $1400.
Huge thanks to all authors, reviewers, editorial team+board, and MIT Press.
Reposted by Dr Cyril Pernet
For the EU, this should be a very urgent matter of national security. All EU member states should build on Denmark's wise strategy to phase out Microsoft products
August 23, 2025 at 8:05 AM
For the EU, this should be a very urgent matter of national security. All EU member states should build on Denmark's wise strategy to phase out Microsoft products
Reposted by Dr Cyril Pernet
#EEGManyLabs website is now live: eegmanylabs.org
A home for our global effort to test the replicability of influential EEG findings, share resources, improve methods in cognitive neuroscience, and grow an open, connected community.
A home for our global effort to test the replicability of influential EEG findings, share resources, improve methods in cognitive neuroscience, and grow an open, connected community.
eegmanylabs
eegmanylabs.org
August 20, 2025 at 3:19 PM
#EEGManyLabs website is now live: eegmanylabs.org
A home for our global effort to test the replicability of influential EEG findings, share resources, improve methods in cognitive neuroscience, and grow an open, connected community.
A home for our global effort to test the replicability of influential EEG findings, share resources, improve methods in cognitive neuroscience, and grow an open, connected community.
Here is a 'new' way to look at your PET data! ICA decomposition and at the same time new atlas for beta amyloid (ADNI data) - awesome work with the OpenNeuroPET team apertureneuro.org/article/1425...
Building multivariate molecular imaging brain atlases using the NeuroMark PET independent component analysis framework | Published in Aperture Neuro
By Cyrus Eierud, Martin Norgaard & 9 more. Here, we introduce the NeuroMark PET approach, utilizing spatially constrained independent component analysis to define overlapping regions that may reflect ...
apertureneuro.org
August 18, 2025 at 2:05 PM
Here is a 'new' way to look at your PET data! ICA decomposition and at the same time new atlas for beta amyloid (ADNI data) - awesome work with the OpenNeuroPET team apertureneuro.org/article/1425...
The emergence returns 👇
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Cognition is an emergent property
Cognition relies on the flexible organization of neural activity. In this discussion, we explore how many aspects of this organization can be describe…
www.sciencedirect.com
August 17, 2025 at 6:27 AM
The emergence returns 👇
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Reposted by Dr Cyril Pernet
Position open for a neuroimaging focused postdoc to come work with us in Sydney
Feel free to get in touch for a chat if you have any questions about it :)
usyd.wd105.myworkdayjobs.com/en-GB/USYD_E...
Feel free to get in touch for a chat if you have any questions about it :)
usyd.wd105.myworkdayjobs.com/en-GB/USYD_E...
August 15, 2025 at 1:18 AM
Position open for a neuroimaging focused postdoc to come work with us in Sydney
Feel free to get in touch for a chat if you have any questions about it :)
usyd.wd105.myworkdayjobs.com/en-GB/USYD_E...
Feel free to get in touch for a chat if you have any questions about it :)
usyd.wd105.myworkdayjobs.com/en-GB/USYD_E...
Reposted by Dr Cyril Pernet
Interested in Network hubs, cortical hierarchies, and gradients? Ever wonder where they come from? Check our latest review, where we cover different approaches to mapping hubs, models for their evolution, and mechanisms for how they develop:
osf.io/preprints/os...
osf.io/preprints/os...
August 17, 2025 at 4:27 AM
Interested in Network hubs, cortical hierarchies, and gradients? Ever wonder where they come from? Check our latest review, where we cover different approaches to mapping hubs, models for their evolution, and mechanisms for how they develop:
osf.io/preprints/os...
osf.io/preprints/os...
Reposted by Dr Cyril Pernet
JET LAG : 5 gestes qui marchent (validés par la science) ✈️🕒
YouTube video by La Vie En 2.0
youtu.be
August 16, 2025 at 3:48 PM
Reposted by Dr Cyril Pernet
New paper in Imaging Neuroscience by Kane Pavlovich, Alex Fornito, et al:
The efficacy of resting-state fMRI denoising pipelines for motion correction and behavioural prediction
doi.org/10.1162/IMAG...
The efficacy of resting-state fMRI denoising pipelines for motion correction and behavioural prediction
doi.org/10.1162/IMAG...
August 8, 2025 at 4:51 AM
New paper in Imaging Neuroscience by Kane Pavlovich, Alex Fornito, et al:
The efficacy of resting-state fMRI denoising pipelines for motion correction and behavioural prediction
doi.org/10.1162/IMAG...
The efficacy of resting-state fMRI denoising pipelines for motion correction and behavioural prediction
doi.org/10.1162/IMAG...
wow the most applied neuroscience paper ever!
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Leveraging cognitive neuroscience for making and breaking real-world habits
Habits are the behavioral output of two brain systems. A stimulus–response (S–R) system that encourages us to efficiently repeat well-practiced action…
www.sciencedirect.com
August 3, 2025 at 2:20 PM
wow the most applied neuroscience paper ever!
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...