#populationgenomics
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birdpicsandscience.bsky.social
Had high variance in coverage at the VCF stage AFTER downsampling bams. I'd marked but not removed dups. Found out I had large variance in duplication rates (and high rates period) across samples. Good reason to remove them!

#genomics
#PopGen
#PopulationGenetics
#PopulationGenomics
High variation in final coverage at the VCF stage across samples. Points are samples, boxplots are distributions within sampling areas. Big range (2-6) despite downsampling bams to consistant coverage pre-genotyping. Distribution of duplication rates in bamfiles--downsampling didn't fix coverage differences due to high overall duplicaiton rates which varied across samples! Points are samples, boxplots are distributions for sampling locations.
March 18, 2025 at 5:47 AM
eliseak.bsky.social
The first chapter of my dissertation comparing genotyping methods for describing wolverine populations in their northwestern North American range is now published in the Journal of Mammalogy, check it out here!
academic.oup.com/jmammal/arti...
#PopGen
#PopulationGenetics
#PopulationGenomics
Comparing microsatellites and single nucleotide polymorphisms to evaluate genetic structure and diversity in wolverines (Gulo gulo) across Alaska and western Canada
Increasing the number and density of genetic loci has increased the resolution of population structure analysis in wide-ranging mammal species. This study
academic.oup.com
January 15, 2025 at 8:15 PM
paigebyerly.bsky.social
Sending out the DNA from these gorgeous Czech Short-eared Owl feathers today! I haven't done whole genome resequencing on non-invasive materials like feathers before, so I'm curious to see what we get #ornithology #populationgenomics
December 2, 2024 at 3:36 PM
ergabiodiv.bsky.social
Missed last year’s #ERGA BioGenome #Analysis and #Applications seminars? Catch up on all 10 sessions on our channel! 📺 Topics include #Phylogenomics, #FunctionalGenomics, #PopulationGenomics, and #ComparativeGenomics.

Watch now: youtube.com/playlist?lis...

Subscribe and stay updated! 🧬
ERGA BioGenome Analysis & Applications Seminars - YouTube
https://www.erga-biodiversity.eu/post/erga-biogenome-analysis-and-applications-seminars
youtube.com
January 10, 2025 at 8:50 AM
physaliacourses.bsky.social
Huge thanks to our amazing instructors Manolo Perez & Matteo Fumagalli for guiding us through genetic data simulations, deep learning, and their inner machinery so clearly! 🙌 And a big shoutout to our participants for their engagement and great discussions! 🚀
#DeepLearning #PopulationGenomics
April 3, 2025 at 2:51 PM
ocasapiens.bsky.social
#populationgenomics

Cavalli Sforza's fascinating History & Geography of Human Genes, cont. by the GenomeAsia.100K consortium.

"In South America, early [West Beringian] migrants split into four groups—Amazonians, Andeans, Chaco Amerindians, and Patagonians—~13,900 years ago.."
From North Asia to South America: Tracing the longest human migration through genomic sequencing
Genome sequencing of 1537 individuals from 139 ethnic groups reveals the genetic characteristics of understudied populations in North Asia and South America. Our analysis demonstrates that West Siberi...
www.science.org
May 17, 2025 at 6:28 PM
ergabiodiv.bsky.social
💡 #KnowledgeHighlight | Speciation & Population #Genomics: a how-to-guide 🐟
🔗 speciationgenomics.github.io

Explore more open-access training materials in the ERGA #KnowledgeHub ➡️ knowledge.erga-biodiversity.eu

#dataanalysis #training #tutorial #PopulationGenomics #Speciation
Speciation & Population Genomics: a how-to-guide
Physalia course
speciationgenomics.github.io
June 3, 2025 at 11:41 AM
dnarnaresearch.bsky.social
Lancet2: Improved and accelerated somatic variant calling with joint multi-sample local assembly graph
doi.org/10.1101/2025...

Comparison of read mapping and variant calling tools for the analysis of plant NGS data
doi.org/10.1101/2020...

#VariantCalling #PopulationGenomics
doi.org
February 24, 2025 at 5:53 AM
ethantolman.bsky.social
Very excited to have two new, and very different, preprints out this Thanksgiving! Special thanks to @jessicalwarelab.bsky.social @paulbfrandsen.bsky.social and others! 🧪
#eDNA #PopulationGenomics #Dragonflies
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
November 28, 2024 at 9:16 PM
eugeniadat.bsky.social
#popgen #PopulationGenomics
July 27, 2025 at 9:23 PM
theg-cat.bsky.social
Looking for a #PhD project (or know someone who is)? I'm currently recruiting for a student to work on #conservation and #PopulationGenomics of two freshwater #fish using whole genome and ddRAD data: more info in the flyer below! #PopGen #ConsGen #Biodiversity 🐟🧪🧬
An A4 flyer for the project "Little Fishes, Big Problems: Using Genomics to Inform Conservation and Management of Pygmy Perches". Text reads "This exciting PhD project will generate and apply cutting edge genomic datasets (whole genomes and genotype-by-sequencing) to inform conservation and management of two freshwater fish species endemic to Western Australia. The highly collaborative research program is will directly contribute to conservation actions and water management in the region. The ideal candidate will have experience with applying molecular techniques to answer ecological, conservation or evolutionary research questions, including DNA extraction bioinformatic pipelines and genomic analysis (not essential). To apply for the project, please submit your academic CV and one page cover letter describing your research interests and relevant experience to Dr. Buckley." It includes a photo of a male western pygmy perch in breeding colours, a QR code, and several logos.
September 6, 2025 at 1:46 AM
remygatins.bsky.social
Hey #evol2025! Interested in marine population genomics, range expanding species, speciation, genome assemblies? Come support my students!!

#EvolutionMeeting #marinespecies #populationgenomics
June 22, 2025 at 4:41 PM
langridgelab.bsky.social
Thanks to @RevoluGen & @Tecan_Talk for supporting this project via their automated, high-throughput #DNA extractions. #longreads #nanopore #populationgenomics #AMR #genomics
November 20, 2024 at 1:57 PM
physaliacourses.bsky.social
Another epic edition of the Population Genomics course comes to a close! 🧬

Big thanks to @tiboleroyinen.bsky.social @bourgeoisyann.bsky.social and our amazing participants for making it such a success! 🚀👏
www.physalia-courses.org/courses-work...

#PopulationGenomics #Bioinformatics
May 30, 2025 at 2:42 PM
physaliacourses.bsky.social
Another great edition of the #aDNA #PopulationGenomics course is wrapping up! 🎉

Huge thanks to @arunsethuraman.bsky.social & @cegamorim.bsky.social – incredibly skilled, super approachable, and always ready to help 🙌

And to all participants who have joined us this week🚀 Until next time! 🌍🧬
September 26, 2025 at 3:36 PM
thuenen.de
DNA-basiert und tötungsfrei: #eDNA und #SNPDetektion aus Hummelbeinen sind 2 vielversprechende Methoden im #Wildbienen|Monitoring. 🐝🧬Über Vorteile und Praxis referiert morgen um 11:00 Wiebke Sickel. Anmeldung👉 https://t.co/YGiNYZZ2og
#MonVia #biodiversity #PopulationGenomics https://t.co/qnzUNSmw4Q
October 24, 2022 at 1:36 PM
physaliacourses.bsky.social
There are only 3 seats left for the #PopulationGenomics using #aDNA course with
@cegamorim.bsky.social & @arunsethuraman.bsky.social
in January.
Check it out: physalia-courses.org/courses-work...
November 30, 2023 at 4:29 PM
francescaraffini.bsky.social
Attending the PopGroup meeting #PPG58 in Sheffield? Our David @szndohrn.bsky.social, FIASCO, and 🐚 🌊🐌 are looking forward to chatting with you with🍷 at poster 9!
#evolution #PopGen #PopulationGenomics #PopulationGenetics #conservationgenomics
January 9, 2025 at 10:11 AM
natcomms.nature.com
Population structure in a fungal human pathogen is associated with clinical prevalence

#Aspergillus flavus

@annemakerofhats.bsky.social ‪@ameliabarberphd.bsky.social‬ @rokaslab.bsky.social

#fungi #infection #PopulationGenomics #mycology
Population structure in a fungal human pathogen is potentially linked to pathogenicity - Nature Communications
Genetic diversity between clinical and environmental fungal isolates of Aspergillus flavus is poorly studied. Here, the authors analysed genomic data from a global set of clinical and environmental A. flavus isolates and report that clinical prevalence is associated with population structure.
bit.ly
October 17, 2025 at 2:47 PM
antobeck.bsky.social
Macrogen, a sequencing service provider in Korea, has chosen #illumina high throughput sequencing to undertake their 145K human whole genome program. We've helped many large projects just like this with more to come. #genomics #PopulationGenomics #PrecisionMedicine #NovaSeqX #DRAGEN ilmn.ly/3ZJLIYo
Macrogen Consortium and Illumina partner to deliver Korean National Bio Big Data project.
Illumina is proud to be selected as sequencing technology partner to the Macrogen Consortium and together we are honoured to support the Korean National Bio Big Data project by sequencing and analysin...
sapac.illumina.com
December 20, 2024 at 3:29 AM
10klepgenomes.bsky.social
(4/4) The meeting in Montpellier built the foundations for a lasting collaborative effort. By combining resources, expertise and data, the initiative paves the way for an unprecedented understanding of butterfly #PopulationGenomics in Europe.

🔗 Learn more at: lepeu.github.io
LepEU: European Lepidopteran Population Genomics Consortium
lepeu.github.io
May 28, 2025 at 11:05 AM
langridgelab.bsky.social
Our Cailean also gave a scientific talk on his future paper about Population Structure of #UPEC in Norfolk. #AMR #Genomics #populationgenomics https://t.co/QcNdJa7sVM
November 20, 2024 at 1:58 PM
physaliacourses.bsky.social
Join our online course (23-26 Mar 2026) on Machine & Deep Learning in #PopulationGenomics & #Phylogeography! Learn to simulate genetic data, apply CNNs for demographic inference & detect selection signals.

www.physalia-courses.org/courses-work...

#AI #MachineLearning #DeepLearning
Machine and Deep Learning methods in population genomics and phylogeography
23-26 March 2026 To foster international participation, this course will be held online
www.physalia-courses.org
November 19, 2025 at 2:29 PM
emmabeansworth.bsky.social
Wanna good read? Here is Cailean's preprint about the population structure of #UPEC in Norfolk. Glad I could help with my #nanopore expertise... I cannot help myself

#AMR #Genomics #populationgenomics

https://t.co/89JUJnkokS https://t.co/P1dtXjoRhR
November 20, 2024 at 2:47 PM
10klepgenomes.bsky.social
(1/4) 🦋 From May 12–16, 21 researchers from across Europe met in Montpellier for the 1st LepEU Workshop, coordinated under the COST Action @10klepgenomes.bsky.social

The goal: build a roadmap for collaborative butterfly and moth #PopulationGenomics to advance biodiversity research & conservation 👇
Group photo of the attendees of the Population Genomics Workshop held in Montpellier. The participants stand in an open forest during a sunny day.
May 28, 2025 at 11:05 AM