Starting with your biological question can help focus your #bioimageAnalysis goals. Learn more in the latest @aicjanelia.bsky.social post on @focalplane.bsky.social 👇
Getting started with analysis can be daunting, especially given the many tools available. In our latest @focalplane.bsky.social post, @scientistrachel.bsky.social & Owen Puls discuss framing analysis questions to extract informative biological information. focalplane.biologists.com/2025/12/15/h...
How do I get started with image analysis? - FocalPlane
How do I get started with image analysis? - AIC at HHMI Janelia
focalplane.biologists.com
December 15, 2025 at 2:36 PM
Starting with your biological question can help focus your #bioimageAnalysis goals. Learn more in the latest @aicjanelia.bsky.social post on @focalplane.bsky.social 👇
#PABI 2025 was successfully completed!
Processing and Analysis of Biological Images workshop, organized and executed by #CELLIMteam, @ceitec.eu and CBIA.
We learned about detectors, image pre-processing, FAIR data, #CellProfiler and #FIJI
#workshop #bioimageanalysis #lightmicroscopy #bioimaging
Processing and Analysis of Biological Images workshop, organized and executed by #CELLIMteam, @ceitec.eu and CBIA.
We learned about detectors, image pre-processing, FAIR data, #CellProfiler and #FIJI
#workshop #bioimageanalysis #lightmicroscopy #bioimaging
December 10, 2025 at 10:46 AM
#PABI 2025 was successfully completed!
Processing and Analysis of Biological Images workshop, organized and executed by #CELLIMteam, @ceitec.eu and CBIA.
We learned about detectors, image pre-processing, FAIR data, #CellProfiler and #FIJI
#workshop #bioimageanalysis #lightmicroscopy #bioimaging
Processing and Analysis of Biological Images workshop, organized and executed by #CELLIMteam, @ceitec.eu and CBIA.
We learned about detectors, image pre-processing, FAIR data, #CellProfiler and #FIJI
#workshop #bioimageanalysis #lightmicroscopy #bioimaging
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Introduction to Image Analysis 2026
www.rms.org.uk
December 1, 2025 at 11:23 AM
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Introduction to Image Analysis 2026
www.rms.org.uk
December 1, 2025 at 10:09 AM
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
We’ll be at @neuripsconf.bsky.social on Wednesday, 3 December, from 11 a.m. to 2 p.m. (San Diego time). Come and chat with us about why distance matrices and invariances are cool! 🎉 #InterdisciplinaryML #neurips2025 #bioimageanalysis #shapequantification
December 1, 2025 at 8:27 AM
We’ll be at @neuripsconf.bsky.social on Wednesday, 3 December, from 11 a.m. to 2 p.m. (San Diego time). Come and chat with us about why distance matrices and invariances are cool! 🎉 #InterdisciplinaryML #neurips2025 #bioimageanalysis #shapequantification
Beautiful images ≠ usable data. 🎨💻
Ask an image analysis expert BEFORE you start experiments. 20 min prep beats weeks of lost experiments, sweat, tears and frustration.
Read more! bit.ly/46mYBL7
Make BioVoxxel your image analyst of choice
youtu.be/2Xo7_wQucKk
#BioImageAnalysis #Microscopy
Ask an image analysis expert BEFORE you start experiments. 20 min prep beats weeks of lost experiments, sweat, tears and frustration.
Read more! bit.ly/46mYBL7
Make BioVoxxel your image analyst of choice
youtu.be/2Xo7_wQucKk
#BioImageAnalysis #Microscopy
3D Cell Segmentation and Neighbor Analysis (BioVoxxel)
YouTube video by Jan Brocher
youtu.be
November 26, 2025 at 8:25 AM
Beautiful images ≠ usable data. 🎨💻
Ask an image analysis expert BEFORE you start experiments. 20 min prep beats weeks of lost experiments, sweat, tears and frustration.
Read more! bit.ly/46mYBL7
Make BioVoxxel your image analyst of choice
youtu.be/2Xo7_wQucKk
#BioImageAnalysis #Microscopy
Ask an image analysis expert BEFORE you start experiments. 20 min prep beats weeks of lost experiments, sweat, tears and frustration.
Read more! bit.ly/46mYBL7
Make BioVoxxel your image analyst of choice
youtu.be/2Xo7_wQucKk
#BioImageAnalysis #Microscopy
Our very own @teunhuijben.bsky.social from the @loicaroyer.bsky.social lab at the Biohub gave a brilliant overview of their journey to improve tracking and visualisation (and our lives in general 😝) at #CBIAS2025 👩🏻💻🔬👩🏻🔬 #tracking #interdisciplinary #bioimageanalysis
November 25, 2025 at 11:52 AM
Our very own @teunhuijben.bsky.social from the @loicaroyer.bsky.social lab at the Biohub gave a brilliant overview of their journey to improve tracking and visualisation (and our lives in general 😝) at #CBIAS2025 👩🏻💻🔬👩🏻🔬 #tracking #interdisciplinary #bioimageanalysis
Amazing talk by my dear colleague and friend @albertdm.bsky.social and his supervisor @maweigert.bsky.social showing the cool things you can do with Spotiflow at #CBIAS2025. Look at this beautiful learned spot detection in 3D! 👩🏻💻👩🏻💻🔬 #bioimageanalysis #spotdetection
November 24, 2025 at 11:31 AM
Amazing talk by my dear colleague and friend @albertdm.bsky.social and his supervisor @maweigert.bsky.social showing the cool things you can do with Spotiflow at #CBIAS2025. Look at this beautiful learned spot detection in 3D! 👩🏻💻👩🏻💻🔬 #bioimageanalysis #spotdetection
Let's see how many computational volume EM talks we can get on the programme! Abstract submission deadline Friday March 6th 2026
#BioImageAnalysis #vem #volumeem
#BioImageAnalysis #vem #volumeem
📣 Abstract submissions for talks and poster presentations are officially *OPEN* for the 21st International Microscopy Congress (IMC21) 💥 🔬 🙌
Join our impressive line-up of speakers at this great event for the #microscopy community.
Abstract submissions: https://ow.ly/chvR50XvFxC
Join our impressive line-up of speakers at this great event for the #microscopy community.
Abstract submissions: https://ow.ly/chvR50XvFxC
November 21, 2025 at 2:46 PM
Let's see how many computational volume EM talks we can get on the programme! Abstract submission deadline Friday March 6th 2026
#BioImageAnalysis #vem #volumeem
#BioImageAnalysis #vem #volumeem
Super grateful to the organisers of
@tlmcambridge.bsky.social for inviting me 🤩 It’s great to see in-person events coming back strong and helping rebuild a solid scientific community around Cambridge. Come have a drink and enjoy some exciting science!👩🔬🔬👩💻 #bioimageanalysis #interdisciplinary #theory
@tlmcambridge.bsky.social for inviting me 🤩 It’s great to see in-person events coming back strong and helping rebuild a solid scientific community around Cambridge. Come have a drink and enjoy some exciting science!👩🔬🔬👩💻 #bioimageanalysis #interdisciplinary #theory
🍻TLM Pub Talks are back! 🍻
Join us for an evening of interesting talks to discuss over a drink in a social environment. All those interested in the intersection of biology and theory are welcome!
Join us for an evening of interesting talks to discuss over a drink in a social environment. All those interested in the intersection of biology and theory are welcome!
November 21, 2025 at 2:14 PM
Super grateful to the organisers of
@tlmcambridge.bsky.social for inviting me 🤩 It’s great to see in-person events coming back strong and helping rebuild a solid scientific community around Cambridge. Come have a drink and enjoy some exciting science!👩🔬🔬👩💻 #bioimageanalysis #interdisciplinary #theory
@tlmcambridge.bsky.social for inviting me 🤩 It’s great to see in-person events coming back strong and helping rebuild a solid scientific community around Cambridge. Come have a drink and enjoy some exciting science!👩🔬🔬👩💻 #bioimageanalysis #interdisciplinary #theory
Big data in microscopy shouldn't be a bottleneck.
I started Arnas Technologies arnastech.com to solve exactly that. We build custom #AI workflows to automate analysis for #lightsheet, #microscopy, and #OMICS data.
#BioTech #DataScience #ImageAnalysis #BioImageAnalysis
I started Arnas Technologies arnastech.com to solve exactly that. We build custom #AI workflows to automate analysis for #lightsheet, #microscopy, and #OMICS data.
#BioTech #DataScience #ImageAnalysis #BioImageAnalysis
November 19, 2025 at 7:16 PM
Big data in microscopy shouldn't be a bottleneck.
I started Arnas Technologies arnastech.com to solve exactly that. We build custom #AI workflows to automate analysis for #lightsheet, #microscopy, and #OMICS data.
#BioTech #DataScience #ImageAnalysis #BioImageAnalysis
I started Arnas Technologies arnastech.com to solve exactly that. We build custom #AI workflows to automate analysis for #lightsheet, #microscopy, and #OMICS data.
#BioTech #DataScience #ImageAnalysis #BioImageAnalysis
Sara from our team has been busy in the last 3 days organising the 8th Crick Data Challenge, a friendly hackathon where attendees tackle research data testing their creativity and coding skills in new ways - congratulations on running a great event! 💻✨
crickdatachallenge.github.io/website/
crickdatachallenge.github.io/website/
November 14, 2025 at 5:44 PM
Last chance to register for #CBIAS2025, registrations are closing on November 20th - join us to discuss all things #bioimageanalysis and don’t miss a great networking opportunity!
Will you be there?
www.crick.ac.uk/whats-on/cri...
Will you be there?
www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
November 12, 2025 at 2:04 PM
Last chance to register for #CBIAS2025, registrations are closing on November 20th - join us to discuss all things #bioimageanalysis and don’t miss a great networking opportunity!
Will you be there?
www.crick.ac.uk/whats-on/cri...
Will you be there?
www.crick.ac.uk/whats-on/cri...
#BioImageAnalysis Job Alert!
As it happens, I was in Helsinki in August for the first time in about 20 years - it's delightful.
But I'm not entirely sure the image below is entirely representative of the role...
jobs.helsinki.fi/job/Helsinki...
As it happens, I was in Helsinki in August for the first time in about 20 years - it's delightful.
But I'm not entirely sure the image below is entirely representative of the role...
jobs.helsinki.fi/job/Helsinki...
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
jobs.helsinki.fi
November 6, 2025 at 8:34 PM
#BioImageAnalysis Job Alert!
As it happens, I was in Helsinki in August for the first time in about 20 years - it's delightful.
But I'm not entirely sure the image below is entirely representative of the role...
jobs.helsinki.fi/job/Helsinki...
As it happens, I was in Helsinki in August for the first time in about 20 years - it's delightful.
But I'm not entirely sure the image below is entirely representative of the role...
jobs.helsinki.fi/job/Helsinki...
Incoming deadline - 7 November 2025
Apply for a @jcellsci.bsky.social @focalplane.bsky.social Training Grant to support your attendance at a #microscopy or #bioimageanalysis training course.
Open to ECRs in #cellbio. For more info: www.biologists.com/grants/jcs-f...
Apply for a @jcellsci.bsky.social @focalplane.bsky.social Training Grant to support your attendance at a #microscopy or #bioimageanalysis training course.
Open to ECRs in #cellbio. For more info: www.biologists.com/grants/jcs-f...
November 5, 2025 at 11:54 AM
Incoming deadline - 7 November 2025
Apply for a @jcellsci.bsky.social @focalplane.bsky.social Training Grant to support your attendance at a #microscopy or #bioimageanalysis training course.
Open to ECRs in #cellbio. For more info: www.biologists.com/grants/jcs-f...
Apply for a @jcellsci.bsky.social @focalplane.bsky.social Training Grant to support your attendance at a #microscopy or #bioimageanalysis training course.
Open to ECRs in #cellbio. For more info: www.biologists.com/grants/jcs-f...
Colocalization isn't just "overlap"—it's potentially 4 distinct analyses or more.
Check out how to dissect colocalization analysis and get a glance on pitfalls and methods to report robust colocalization results.
Read newsletter now! bit.ly/46mYBL7
#Microscopy #BioImageAnalysis #Colocalization
Check out how to dissect colocalization analysis and get a glance on pitfalls and methods to report robust colocalization results.
Read newsletter now! bit.ly/46mYBL7
#Microscopy #BioImageAnalysis #Colocalization
November 5, 2025 at 9:10 AM
Colocalization isn't just "overlap"—it's potentially 4 distinct analyses or more.
Check out how to dissect colocalization analysis and get a glance on pitfalls and methods to report robust colocalization results.
Read newsletter now! bit.ly/46mYBL7
#Microscopy #BioImageAnalysis #Colocalization
Check out how to dissect colocalization analysis and get a glance on pitfalls and methods to report robust colocalization results.
Read newsletter now! bit.ly/46mYBL7
#Microscopy #BioImageAnalysis #Colocalization
Time to report the progress of two hackathons, taggaton and training school #GloBIAS2025 #GloBIAS #BioimageAnalysis @globias.bsky.social
October 30, 2025 at 4:07 AM
Time to report the progress of two hackathons, taggaton and training school #GloBIAS2025 #GloBIAS #BioimageAnalysis @globias.bsky.social
Opening of the networking dinner by traditional sake opening ceremony
#GloBIAS2025 #BioimageAnalysis @kbias.bsky.social @globias.bsky.social
#GloBIAS2025 #BioimageAnalysis @kbias.bsky.social @globias.bsky.social
October 30, 2025 at 2:49 AM
Opening of the networking dinner by traditional sake opening ceremony
#GloBIAS2025 #BioimageAnalysis @kbias.bsky.social @globias.bsky.social
#GloBIAS2025 #BioimageAnalysis @kbias.bsky.social @globias.bsky.social
A month to go! Will you be at #CBIAS2025?
The program is almost ready, and we look forward to welcoming you in London to discuss all things #BioImageAnalysis, from tool development, to biomedical applications and community building.
Register now! 🔗⬇️
www.crick.ac.uk/whats-on/cri...
The program is almost ready, and we look forward to welcoming you in London to discuss all things #BioImageAnalysis, from tool development, to biomedical applications and community building.
Register now! 🔗⬇️
www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
October 24, 2025 at 8:48 AM
A month to go! Will you be at #CBIAS2025?
The program is almost ready, and we look forward to welcoming you in London to discuss all things #BioImageAnalysis, from tool development, to biomedical applications and community building.
Register now! 🔗⬇️
www.crick.ac.uk/whats-on/cri...
The program is almost ready, and we look forward to welcoming you in London to discuss all things #BioImageAnalysis, from tool development, to biomedical applications and community building.
Register now! 🔗⬇️
www.crick.ac.uk/whats-on/cri...
Hardest pixel in bio? When organoids touch.
Knowledge-driven DL: hybrid labels + multimodal encoder (temporal+freq) + decoupled tracking + hysteresis split.👇
https://glcnd.io/advancing-organoid-morphological-segmentation-with-a-knowledge-driven-deep-learning-framework/
#Organoids #BioimageAnalysis
Knowledge-driven DL: hybrid labels + multimodal encoder (temporal+freq) + decoupled tracking + hysteresis split.👇
https://glcnd.io/advancing-organoid-morphological-segmentation-with-a-knowledge-driven-deep-learning-framework/
#Organoids #BioimageAnalysis
Advancing Organoid Morphological Segmentation with a Knowledge-Driven Deep Learning Framework - GLCND.IO
glcnd.io
October 23, 2025 at 11:10 PM
Hardest pixel in bio? When organoids touch.
Knowledge-driven DL: hybrid labels + multimodal encoder (temporal+freq) + decoupled tracking + hysteresis split.👇
https://glcnd.io/advancing-organoid-morphological-segmentation-with-a-knowledge-driven-deep-learning-framework/
#Organoids #BioimageAnalysis
Knowledge-driven DL: hybrid labels + multimodal encoder (temporal+freq) + decoupled tracking + hysteresis split.👇
https://glcnd.io/advancing-organoid-morphological-segmentation-with-a-knowledge-driven-deep-learning-framework/
#Organoids #BioimageAnalysis
🔬 Join us in Leipzig!
The #YMIA panel discussion "The Power of Sharing: Open Data in Bio-image Analysis" is happening in person at UFZ Leipzig on Friday!
Organized by the Young Microscopists & Image Analysts (YMIA) Team, part of the GerBI community.
#BioImageAnalysis #Microscopy #OpenData
The #YMIA panel discussion "The Power of Sharing: Open Data in Bio-image Analysis" is happening in person at UFZ Leipzig on Friday!
Organized by the Young Microscopists & Image Analysts (YMIA) Team, part of the GerBI community.
#BioImageAnalysis #Microscopy #OpenData
October 22, 2025 at 7:27 AM
🔬 Join us in Leipzig!
The #YMIA panel discussion "The Power of Sharing: Open Data in Bio-image Analysis" is happening in person at UFZ Leipzig on Friday!
Organized by the Young Microscopists & Image Analysts (YMIA) Team, part of the GerBI community.
#BioImageAnalysis #Microscopy #OpenData
The #YMIA panel discussion "The Power of Sharing: Open Data in Bio-image Analysis" is happening in person at UFZ Leipzig on Friday!
Organized by the Young Microscopists & Image Analysts (YMIA) Team, part of the GerBI community.
#BioImageAnalysis #Microscopy #OpenData
🇬🇧 Are you based in the UK?
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...
Expression of Interest: UK Bioimage Analysis Network (UK-BIAS)
The UK node of Euro-BioImaging, a major European initiative providing open access to biological and biomedical imaging technologies, currently offers assistance with Biological Image Data Analysis. Ho...
forms.gle
October 21, 2025 at 8:35 AM
🇬🇧 Are you based in the UK?
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...
💻 Do you spend a significant amount of time working on #BioImageAnalysis?
🧑🤝🧑 Want to spend time supporting external users?
The UK BioImage Analysis Network (UK-BIAS) might be for you.
Apply below before November 5th.
forms.gle/XhP15nxg2ZgW...
This is a new step for accessible, FAIR bioimage AI 🚀
Try the tool 👉 imaging.usegalaxy.eu?tool_id=tool...
Contribute your models 🧑🔬 And join the community making bioimage analysis open & reproducible!
#BiaPy #GalaxyProject #BioImageAnalysis #Bioimaging
Try the tool 👉 imaging.usegalaxy.eu?tool_id=tool...
Contribute your models 🧑🔬 And join the community making bioimage analysis open & reproducible!
#BiaPy #GalaxyProject #BioImageAnalysis #Bioimaging
Galaxy
Galaxy is a community-driven web-based analysis platform for life science research.
imaging.usegalaxy.eu
October 20, 2025 at 2:11 PM
This is a new step for accessible, FAIR bioimage AI 🚀
Try the tool 👉 imaging.usegalaxy.eu?tool_id=tool...
Contribute your models 🧑🔬 And join the community making bioimage analysis open & reproducible!
#BiaPy #GalaxyProject #BioImageAnalysis #Bioimaging
Try the tool 👉 imaging.usegalaxy.eu?tool_id=tool...
Contribute your models 🧑🔬 And join the community making bioimage analysis open & reproducible!
#BiaPy #GalaxyProject #BioImageAnalysis #Bioimaging
🚀 Big news: BiaPy meets @galaxyproject.bsky.social! ⛴️🤝🌌
You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.
👉 imaging.usegalaxy.eu?tool_id=tool...
#BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging
You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.
👉 imaging.usegalaxy.eu?tool_id=tool...
#BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging
Galaxy
Galaxy is a community-driven web-based analysis platform for life science research.
imaging.usegalaxy.eu
October 20, 2025 at 2:11 PM
🚀 Big news: BiaPy meets @galaxyproject.bsky.social! ⛴️🤝🌌
You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.
👉 imaging.usegalaxy.eu?tool_id=tool...
#BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging
You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.
👉 imaging.usegalaxy.eu?tool_id=tool...
#BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging
As part of our monthly meeting, we do a run-down of all* the new #bioimageanalysis tools that have been published in the last couple of weeks on BioRxiv**, so I thought I'd start sharing here as well.
*I will miss some, apologies if I miss your paper
*I will miss some, apologies if I miss your paper
October 17, 2025 at 7:17 AM
As part of our monthly meeting, we do a run-down of all* the new #bioimageanalysis tools that have been published in the last couple of weeks on BioRxiv**, so I thought I'd start sharing here as well.
*I will miss some, apologies if I miss your paper
*I will miss some, apologies if I miss your paper