After a long journey, Segment Anything for Microscopy is now published in Nature Methods! We significantly improve SAM for interactive and automatic segmentation in light and electron microscopy and build a user-friendly tool.
www.nature.com/articles/s41...

🔬🎤 As pre-announced a few days ago... please let us proudly present to you: 𝑴𝒊𝒄𝒓𝒐𝕊𝒑𝒍𝒊𝒕 - your ticket to imaging more, imaging more gentle, and/or imaging more efficient. 🔬

doi.org/10.1101/2025...

Like ❤️, repost 🔂, and most importantly... please send feedback ✉️ our way! 🙏

We're hiring! Our IT Team is looking for a Linux Systems Engineer to support scientific computing and big data management. Apply here: www.fmi.ch/education-ca...

2025 is now well underway and we are happy to announce that ZIDAS is coming to Basel this year !
2025.zidas.org

🎉 Zarr-Python 3 is here! 🎉

- Full support for Zarr v3 spec
- Chunk-sharding for more efficient data storage
- Major performance boosts with async I/O & parallel compression

💻 pip install --upgrade zarr
💻 conda install --channel conda-forge zarr

Blog post: https://buff.ly/3C3OwYw

I created a starter pack for Imaging Scientists that work in core facilities.

I'm sure I missed lots of people since I searched for those that have "core" or "facility" in their bios, so let me know who else should be added!

go.bsky.app/2bbgRQU

Quick reminder that we are looking for #TheoryFellow s to join us at @hhmijanelia.bsky.social. The deadline for applications is 1736280000.

My #BioimageTooloftheDay
is the fantastic Introduction to Bioimage Analysis book by Pete Bankhead
bioimagebook.github.io/index.html
Because seriously, this is awesome
Also how can you get started without a good book

Dear blue-friends,
I have just learnt that, due to a cold and brutal administrative decision completely beyond my control, we have to terminate the contract of one of my PhD students, who was recently recruited for a project in cellular mechanobiology 😲.

Thread ! 👇

We are looking for a Data Scientist at the MBExC Excellence Cluster in Göttngen: shorturl.at/Jln3V .
Please RT! Read on for more details.

🔬 Join FMI! We’re seeking a proteomics expert to develop cutting-edge mass spectrometry applications. Collaborate with top researchers in Genome Regulation, Multicellular Systems, and Neurobiology.
Apply now or share this job ad in your network!
#proteomics #CoreFacility

www.fmi.ch/education-ca...

Interested in microscopy and/or image analysis? Check out my newest starter pack of super folks.(which also links to the previous, 150-awesome-full one! Both also link to other imaging-y starter packs as I find them)

go.bsky.app/MU8c2A2

I made a BioImage Analysts Starter pack. Reachout if you're missing on it 🔬💻🌐
go.bsky.app/2hPEBDu

So exciting to see everyone here. A brief self-intro for others:

I am currently a PhD student with @florianjug.bsky.social. My work involves the application of AI in bioimage analysis. I am interested in the application of #GenAI to solve inverse problems with #DiffusionModels #FlowMatching #VAEs.