Tim-Oliver Buchholz
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tibuch.bsky.social
Tim-Oliver Buchholz
@tibuch.bsky.social
700 followers 810 following 6 posts
Data Scientist at Novartis | bio-image analyst | he/him
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tibuch.bsky.social
Nice! Can you add me too?
December 7, 2024 at 5:00 PM
Reposted by Tim-Oliver Buchholz
guijacquemet.bsky.social
My #BioimageTooloftheDay
is the fantastic Introduction to Bioimage Analysis book by Pete Bankhead
bioimagebook.github.io/index.html
Because seriously, this is awesome
Also how can you get started without a good book
Introduction to Bioimage Analysis — Introduction to Bioimage Analysis
bioimagebook.github.io
November 30, 2024 at 6:00 PM
tibuch.bsky.social
Congratulations! 🥂
November 27, 2024 at 8:05 AM
tibuch.bsky.social
☝️🙏
November 20, 2024 at 11:37 AM
tibuch.bsky.social
A working example can be found here:
fmi-faim.github.io/example-proj...
Example Project
fmi-faim.github.io
November 20, 2024 at 10:56 AM
tibuch.bsky.social
From an end-user perspective I find pixi very simple, especially if one uses pixi-tasks. A standard execution pipeline now boils down to:
1. WD=runs/dataset pixi run build_config
2. WD=runs/dataset pixi run workflow
3. WD=runs/dataset pixi run visualization

No conda env create, conda activate...
November 20, 2024 at 10:54 AM
tibuch.bsky.social
☝️
Thank you!
November 20, 2024 at 8:13 AM