Taro Ozaki
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taro-ozaki.bsky.social
Taro Ozaki
@taro-ozaki.bsky.social
Tohoku Univ., Biosynthesis of Natural Products
https://orcid.org/0000-0002-4673-4478
Genome Mining-Based Discovery of Pyrano[2,3-c]pyrrole Type Natural Products Possessing Alkyl Side Chain with Branched Methyl Groups | Organic Letters pubs.acs.org/doi/10.1021/...
pubs.acs.org
July 26, 2025 at 5:44 AM
Ketosynthase Domain Catalyzes β-Lactonization in the Biosynthesis of the HMG-CoA Synthase Inhibitor Hymeglusin | Journal of the American Chemical Society pubs.acs.org/doi/full/10....
Ketosynthase Domain Catalyzes β-Lactonization in the Biosynthesis of the HMG-CoA Synthase Inhibitor Hymeglusin
Hymeglusin (1) is a fungal polyketide consisting of a β-lactone ring with a unique (3R,4R) configuration. 1 is a potent 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase inhibitor. Because it circumve...
pubs.acs.org
July 19, 2025 at 9:19 AM
Reposted by Taro Ozaki
Don't miss Sheref S. Mansy, Simone Scintilla et al's recent article #ChemSciCovers #chemsky

'Prebiotic synthesis of the major classes of iron–sulfur clusters'

🔗 doi.org/10.1039/D5SC...

Artwork created by Annie Tykwinski
March 15, 2025 at 10:00 AM
Reposted by Taro Ozaki
Synthetic biologists discuss with Nature why it’s so hard to write a genome. “We underestimated how complex biology is.” 🧪 🧬
Why is it so hard to rewrite a genome?
Synthetic biologists have the know-how and ambition to retool whole genomes. But the hidden complexity of biological systems continues to surprise them.
go.nature.com
March 2, 2025 at 2:32 AM
Reposted by Taro Ozaki
Nature research paper: A systems-level, semi-quantitative landscape of metabolic flux in C. elegans

https://go.nature.com/3Dbefia
A systems-level, semi-quantitative landscape of metabolic flux in C. elegans - Nature
A strategy is introduced that infers whole-animal metabolic flux wiring from transcriptional phenotypes in the nematode Caenorhabditis elegans and several features in its adult metabolism are discovered that are validated by stable isotope tracing.
go.nature.com
February 27, 2025 at 10:19 AM
Reposted by Taro Ozaki
Scalable, Convergent Total Synthesis of (+)-Saxitoxin and Related Natural Products

Authors: Yinliang Guo, Yiheng Li, Sihan Chen, Oscar Poll, Yige Wu, Christopher Prier, Kai-Jiong Xiao, Phil Baran
DOI: 10.26434/chemrxiv-2025-qj8f5
February 18, 2025 at 12:41 PM
Reposted by Taro Ozaki
One of the world’s most fearsome crustaceans has evolved to deliver deadly punches to its prey without damaging its own body — and now, scientists have shown how.

https://go.nature.com/3Ep
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Mantis shrimp have the world’s fastest punch — here’s how their limbs survive
Insights from probing the shock-absorbing layer within the crustacean’s club-like claw could inspire the design of tough new materials.
go.nature.com
February 6, 2025 at 9:15 PM
Reposted by Taro Ozaki
Now out in @science.org w/ @jshendure.bsky.social we present 'Genome-shuffle-seq': a method to shuffle mammalian genomes and characterize the impact of structural variants (SVs) with single-cell resolution in one experiment.

www.science.org/doi/10.1126/...
Multiplex generation and single-cell analysis of structural variants in mammalian genomes
Studying the functional consequences of structural variants (SVs) in mammalian genomes is challenging because (i) SVs arise much less commonly than single-nucleotide variants or small indels and (ii) ...
www.science.org
January 31, 2025 at 7:41 PM
Reposted by Taro Ozaki
Interested in genome mining for natural product discovery? Check out our recent paper in collaboration with the Linington lab pubs.rsc.org/en/content/a...
Discovery of megapolipeptins by genome mining of a Burkholderiales bacteria collection
Burkholderiales bacteria have emerged as a promising source of structurally diverse natural products that are expected to play important ecological and industrial roles. This order ranks in the top th...
pubs.rsc.org
December 10, 2024 at 3:20 PM
Reposted by Taro Ozaki
Nature research paper: Methanol transfer supports metabolic syntrophy between bacteria and archaea

https://go.nature.com/40RkBfv
Methanol transfer supports metabolic syntrophy between bacteria and archaea - Nature
Zhaonella formicivorans produces methanol, for a novel syntrophic interaction, without requiring methylated compounds as an input.
go.nature.com
January 29, 2025 at 5:46 PM
Reposted by Taro Ozaki
Nature research paper: Structure and mechanism of vitamin-K-dependent γ-glutamyl carboxylase

https://go.nature.com/40ElOF
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Structure and mechanism of vitamin-K-dependent γ-glutamyl carboxylase - Nature
Structural and cellular assays and molecular dynamics simulations reveal the mechanism of action of γ-glutamyl carboxylase, which involves cholesterol and vitamin K.
go.nature.com
January 29, 2025 at 6:21 PM
Reposted by Taro Ozaki
Nature research paper: Expanding the human gut microbiome atlas of Africa

https://go.nature.com/42x1t7S
Expanding the human gut microbiome atlas of Africa - Nature
A cross-sectional study from four African countries shows the importance of investigating the gut microbiome in previously under-represented populations and provides a framework for equitable microbiome research.
go.nature.com
January 30, 2025 at 3:09 PM
Reposted by Taro Ozaki
Reposted by Taro Ozaki
A study in Nature used deep learning methods to design proteins that can neutralize the effects of three-finger toxins found in snake venom, which could lead to the development of safer and more accessible antivenom treatments. https://go.nature.com/4aDxmxK 🧪
January 27, 2025 at 1:38 PM
Reposted by Taro Ozaki
'Peptide Backbone Cleavage and Transamidation via Thioester-to-Imide Acyl Transfer' from JACS Au is currently free to read as an #ACSEditorsChoice.

📖 Access the full article: https://buff.ly/3WtsCVu
January 24, 2025 at 1:00 PM
Reposted by Taro Ozaki
Wheat infection by Fusarium graminearum species complex members is facilitated by a transcriptionally conserved non-ribosomal peptide synthetase gene cluster https://www.biorxiv.org/content/10.1101/2025.01.24.634825v1
January 26, 2025 at 3:16 AM