Nandan Varadarajan
nandan111.bsky.social
Nandan Varadarajan
@nandan111.bsky.social
Scientist-Project lead (innovation) @ProQR |RNA biology | RNA therapeutics | Oligonucleotide therapeutics.
Alumni: MUNI, IISc, BU.
Reposted by Nandan Varadarajan
Organelles do NOT have a single uniform pH.
And if you think they must, because “protons diffuse fast,” this paper is for you.
A thread on why that assumption is wrong; and what we found instead. 🧵 1/n
December 17, 2025 at 12:46 AM
Reposted by Nandan Varadarajan
Nature research paper: A broad-spectrum lasso peptide antibiotic targeting the bacterial ribosome

https://go.nature.com/4iECjJz
A broad-spectrum lasso peptide antibiotic targeting the bacterial ribosome - Nature
A new lasso peptide antibiotic exhibits broad-spectrum activity against Gram-negative and Gram-positive bacteria by interfering with bacterial protein synthesis, is unaffected by common resistance mechanisms and shows no toxicity towards human cells.
go.nature.com
March 26, 2025 at 5:40 PM
Reposted by Nandan Varadarajan
February 26, 2025 at 2:58 PM
Reposted by Nandan Varadarajan
An elevated level of the mRNA exporter Mex67-Mtr2 in nuclear mRNPs impairs nuclear mRNA export https://www.biorxiv.org/content/10.1101/2025.02.26.640412v1
February 27, 2025 at 2:45 AM
Reposted by Nandan Varadarajan
Nuclear speckle proteins form intrinsic and MALAT1-dependent microphases https://www.biorxiv.org/content/10.1101/2025.02.26.640430v1
February 27, 2025 at 10:49 AM
Reposted by Nandan Varadarajan
Single-ribosome visualization of stopless-ORF circular RNAs reveals cooperativity for rapid, efficient translation #NBThighlight www.cell.com/cell/fulltex...
Long-term imaging of individual ribosomes reveals ribosome cooperativity in mRNA translation
Ribosomes cooperate through transient collisions to ensure efficient translation.
cell.com
February 6, 2025 at 4:24 PM
Reposted by Nandan Varadarajan
Our collaborative AGO2 work with @bartellab.bsky.social is published! Abdallah and Peter used cryo-EM and biochemistry to determine the structure of AGO2 in a slicing competent conformation with a fully paired RNA. Read more about it here: tinyurl.com/AGO2-slicing
The structural basis for RNA slicing by human Argonaute2
Mohamed et al. report the cryoelectron microscopy structure of human AGO2 with fully paired guide RNA. Their analysis reveals the structural basis for the slicing activity that drives RNAi, showing that the slicing-competent conformation is achieved by domain movements and RNA-protein contacts distinct from those of conformational intermediates and prokaryotic homologs.
tinyurl.com
January 1, 2025 at 5:03 PM