Katsuhiko Minami
katsuminami.bsky.social
Katsuhiko Minami
@katsuminami.bsky.social
Postdoc at Maeshima-Lab (@kazu-maeshima.bsky.social), National Institute of Genetics, Japan / Interested in chromatin, replication, microscopy, ...
Reposted by Katsuhiko Minami
🧩 Also highly relevant: a modeling study from Bin Zhang group predicts condensed euchromatin domains with active protrusions. Perfectly complementary to our findings! 3
www.biorxiv.org/content/10.1...
August 28, 2025 at 4:18 AM
Reposted by Katsuhiko Minami
We thank all the coauthors: @katsuminami.bsky.social‬, Tamura-san, Ashwin-san, Higashi-san, Nishiyama-san, Kanemaki-san, Sasai-san @lschermelleh.bsky.social‬, Toyoda-san. 🙏Special thanks to @healthcare.nikon.com‬ for 3D-SIM support. Also see our related paper‪@TICB bit.ly/4fW4cfL 2
Is euchromatin really open in the cell?
Growing evidence has demonstrated that strings of nucleosomes, consisting of DNA wrapped around core histones [1], are rather irregularly and dynamically folded as chromatin in the cell (Figure 1A,B) ...
bit.ly
August 28, 2025 at 4:18 AM
Reposted by Katsuhiko Minami
Is euchromatin really “open”? Our new study @bioRxiv suggests otherwise. Using super-resolution imaging @shiori-iida.bsky.social@masaashimazoe.bsky.social reveals: Euchromatin forms condensed domains in live cells. Cohesin constrains them and prevents domain mixing.
www.biorxiv.org/cgi/content/...
August 28, 2025 at 4:18 AM
Reposted by Katsuhiko Minami
Our new preprint 🧬🔗 www.biorxiv.org/content/10.1...
BRD4-NUT forms liquid-like condensates that locally constrain nucleosomes via BRD4-mediated crosslinking— physical control of #chromatin by #LLPS transcription condensates. @semeigazin.bsky.social @katsuminami.bsky.social @masaashimazoe.bsky.social
July 10, 2025 at 4:21 AM
Reposted by Katsuhiko Minami
Our new review paper is out@JMB!🧬
@katsuminami.bsky.social@semeigazin.bsky.social‬ ‪@kakonakazato.bsky.social‬ discuss DNA accessibility in euchromatin and heterochromatin of live cells.
Free access: authors.elsevier.com/a/1lHgb54HFZ...
Also check our previous work: www.science.org/doi/10.1126/...
June 18, 2025 at 6:20 AM
Reposted by Katsuhiko Minami
📢 NIG Postdoc Fellowship Call!
www.nig.ac.jp/nig/career-d...
🧬We’re seeking motivated postdocs to join our lab. 🔬We study chromatin behavior in living cells using advanced live-cell imaging and quantitative analysis:
www.science.org/doi/10.1126/...
doi.org/10.2183/pjab...
Interested? Please apply!
April 30, 2025 at 3:27 PM
Reposted by Katsuhiko Minami
🎥 Video: See chromatin in action — each dot is a single nucleosome, dynamically fluctuating in a living HeLa cell (TMR-labeled, 50 ms/frame).
🔬 Original paper: www.science.org/doi/full/10....
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells
Local chromatin motion remains steady during interphase, allowing cells to conduct housekeeping tasks under similar environments.
www.science.org
April 25, 2025 at 12:24 AM
Reposted by Katsuhiko Minami
🧬My retrospective chromatin review is out @Proc Jpn Acad:
doi.org/10.2183/pjab...
The textbook view of #chromatin as 30-nm fibers is fading.
A new paradigm: chromatin forms #liquid-like domains—locally dynamic, yet globally stable at the chromosome level (viscoelastic)—supporting genome function. ✨
April 25, 2025 at 12:24 AM
(1/2) Glad to inform that our work is finally out from Science Advances!
Our Repli-Histo labeling revealed the distinct physical properties of euchromatin (liquid-like) and heterochromatin (gel-like) and their implications for replication timing.
Our new paper is out@ScienceAdvances👇
www.science.org/doi/10.1126/...
🧬Our Repli-Histo labeling marks nucleosomes in euchromatin and heterochromatin in live human cells.
🔍 @katsuminami.bsky.social et al. have developed a chromatin behavior atlas within the nucleus. 1/2
April 1, 2025 at 12:11 PM
Reposted by Katsuhiko Minami
We quantitatively measured nucleosome motion across the 4 chromatin classes, from euchromatin to heterochromatin.
🧪 More euchromatic regions (i.e., earlier-replicated regions) show greater nucleosome motion.
🎉 Congrats @katsuminami.bsky.social @kakonakazato.bsky.social and all collaborators!
2/2
March 29, 2025 at 1:06 AM
Reposted by Katsuhiko Minami
Our new paper is out@ScienceAdvances👇
www.science.org/doi/10.1126/...
🧬Our Repli-Histo labeling marks nucleosomes in euchromatin and heterochromatin in live human cells.
🔍 @katsuminami.bsky.social et al. have developed a chromatin behavior atlas within the nucleus. 1/2
March 29, 2025 at 1:06 AM
Reposted by Katsuhiko Minami
Our new preprint is out@bioRxiv: www.biorxiv.org/content/10.1...
@masaashimazoe.bsky.social et al. reveal that linker histone H1 acts as a liquid-like glue to organize chromatin in living cells. 🎉 Fantastic collab with @rcollepardo.bsky.social @janhuemar.bsky.social and others—huge thanks! 🙌 1/
March 7, 2025 at 12:37 AM
Reposted by Katsuhiko Minami
Our new review on how the #chromatin domain is formed in the cell is now available @Curr Opin Struct Biol.📄✨
We critically discuss the domain formation mechanism from a physical perspective, including #phase-separation and #condensation.
📥 Free-download link:
authors.elsevier.com/a/1keGn,LqAr...
February 20, 2025 at 11:15 AM
Reposted by Katsuhiko Minami
Nature research paper: Mechanism for local attenuation of DNA replication at double-strand breaks

https://go.nature.com/4k8AdCX
Mechanism for local attenuation of DNA replication at double-strand breaks - Nature
DNA double-strand breaks induce local genome maintenance and inhibition of replication initiation at nearby topologically associating domains without affecting global DNA synthesis.
go.nature.com
February 20, 2025 at 6:57 PM
Hello, world!
(X: katsu_s_minami)
January 14, 2025 at 1:41 PM