Brian Loyal
bloyal.bsky.social
Brian Loyal
@bloyal.bsky.social
AI for drug discovery at AWS
Reposted by Brian Loyal
Legend says the ancient Babylonians once tried to sequence and annotate God's own genome, and for their ambition and hubris they were forever cursed to have different annotation formats and standards so they could never do genomics with ease again.
July 25, 2025 at 9:38 PM
Reposted by Brian Loyal
Folks. Check your feeds. It's done
June 13, 2025 at 3:27 AM
Reposted by Brian Loyal
OpenAI just updated ChatGPT to be able to use RDKit, a cheminformatics Python package.

OpenAI's president says this makes ChatGPT "useful for scientific work across health, biology, and chemistry," but it is hilariously still not good at chemistry (🧵)

#chemsky #AI ⚗️🧪🖥️
May 23, 2025 at 7:53 PM
Reposted by Brian Loyal
Imagine starting a car that hadn't run in 21 years, that's 15 billion miles away in interstellar space. That's what the NASA team just did with Voyager's thrusters. People are amazing. jpl.nasa.gov/news/nasas-v...
May 17, 2025 at 12:59 PM
Clippy Desktop Assistant
felixrieseberg.github.io
May 12, 2025 at 2:41 PM
I love uv and this is a good intro: hclimente.github.io/blog/python-...
An intro to uv | Héctor Climente-González
A Swiss Army Knife for Python data science
hclimente.github.io
April 27, 2025 at 2:53 PM
“Vaccines cause adults” ❤️
April 17, 2025 at 1:18 PM
Reposted by Brian Loyal
Backpropagation 101 #machinelearning with #cats #caturday
April 5, 2025 at 11:33 PM
AI 2027
A research-backed AI scenario forecast.
ai-2027.com
April 4, 2025 at 7:33 PM
Emu War - Wikipedia
en.wikipedia.org
March 23, 2025 at 4:29 PM
Reposted by Brian Loyal
Learning the language of protein-protein interactions www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/VarunUllanat...
March 17, 2025 at 8:00 PM
🤨
March 3, 2025 at 6:28 PM
Reposted by Brian Loyal
March 1, 2025 at 10:22 AM
Legend
Francis Collins, the NIH Director for 12 years, led the Human Genome Project and other NIH efforts for 32 years, resigned today. Key words from his resignation letter
www.nytimes.com/2025/03/01/u...
March 1, 2025 at 8:54 PM
Reposted by Brian Loyal
It's important to communicate to the public the importance of basic science. Coco is happy to help explain drug binding mechanisms and enzyme kinetics basics:
#scicomm
February 27, 2025 at 1:51 AM
Lab-in-the-loop therapeutic antibody design with deep learning
Therapeutic antibody design is a complex multi-property optimization problem that traditionally relies on expensive search through sequence space. Here, we introduce "Lab-in-the-loop," a paradigm shift for antibody design that orchestrates generative machine learning models, multi-task property predictors, active learning ranking and selection, and in vitro experimentation in a semi-autonomous, iterative optimization loop. By automating the design of antibody variants, property prediction, ranking and selection of designs to assay in the lab, and ingestion of in vitro data, we enable a holistic, end-to-end approach to antibody optimization. We apply lab-in-the-loop to four clinically relevant antigen targets: EGFR, IL-6, HER2, and OSM. Over 1,800 unique antibody variants are designed and tested, derived from lead molecule candidates obtained via animal immunization and state-of-the-art immune repertoire mining techniques. Four lead candidate and four design crystal structures are solved to reveal mechanistic insights into the effects of mutations. We perform four rounds of iterative optimization and report 3-100x better binding variants for every target and ten candidate lead molecules, with the best binders in a therapeutically relevant 100 pM range. ### Competing Interest Statement All authors are or were employees of Genentech Inc. (a member of the Roche Group) or Roche, and may hold Roche stock or related interests.
www.biorxiv.org
February 26, 2025 at 10:01 PM
Reposted by Brian Loyal
As others have noted, the life of Carl Bosch is worth a look in these times. Fritz Haber demonstrated that nitrogen could be reduced to ammonia, but Bosch’s work turned that into a technology that changed the world with sudden new supplies of fertilizer (and of explosives). (1/8)
February 20, 2025 at 9:52 PM
Pharma CEOS Speaking Up, Damn It | Science | AAAS www.science.org/content/blog...
Pharma CEOS Speaking Up, Damn It
www.science.org
February 20, 2025 at 2:44 AM
Reposted by Brian Loyal
So has anyone put a really, truly, AI-from-scratch antibody into the clinic yet? Press releases aside, the answer is “absolutely not”.
AI Antibodies? Really?
www.science.org
February 13, 2025 at 7:25 PM