Benjamin Hepp
@benjaminhepp.bsky.social
PhD in Microbiology / Currently a PostDoc in Steve BELL lab at Ohio State University / DNA Replication in Sulfolobus / #Biochemistry #Archaea
Reposted by Benjamin Hepp
I posted a while back about @cumsille.bsky.social ‘s lovely GenoVi software, but it really is great and makes lovely publication quality figures- recommend 5*s - GenoVi, an open-source automated circular genome visualizer for bacteria and archaea journals.plos.org/ploscompbiol...
GenoVi, an open-source automated circular genome visualizer for bacteria and archaea
Author summary Genome visualization tools can inspect genomic features in a DNA sequence, delivering a visual aid to quickly understand genome architecture and function. Circular representations frequ...
journals.plos.org
November 15, 2024 at 8:12 AM
I posted a while back about @cumsille.bsky.social ‘s lovely GenoVi software, but it really is great and makes lovely publication quality figures- recommend 5*s - GenoVi, an open-source automated circular genome visualizer for bacteria and archaea journals.plos.org/ploscompbiol...
Reposted by Benjamin Hepp
The archaeon Sulfolobus acidocaldarius has four different surface filaments. Each of them plays its special role in motility, adhesion, biofilm formation and mating. Our latest cryoEM foray into three of these unique structures is now published: www.nature.com/articles/s41...
November 29, 2024 at 11:10 PM
The archaeon Sulfolobus acidocaldarius has four different surface filaments. Each of them plays its special role in motility, adhesion, biofilm formation and mating. Our latest cryoEM foray into three of these unique structures is now published: www.nature.com/articles/s41...
Reposted by Benjamin Hepp
Did you miss our latest work on hypersaline and chaotropic ecosystems in the Danakil depression, where microbial communities harbour up to 99% of archaea? Go check what life looks like in these unique places: www.nature.com/articles/s41... @deemteam.bsky.social
Extremely acidic proteomes and metabolic flexibility in bacteria and highly diversified archaea thriving in geothermal chaotropic brines - Nature Ecology & Evolution
Metagenome analysis of microbial communities from the Danakil Depression shows that haloarchaea and Nanohaloarchaeota dominate these life-limiting salt-saturated conditions and that these archaea have...
www.nature.com
November 20, 2024 at 8:36 AM
Did you miss our latest work on hypersaline and chaotropic ecosystems in the Danakil depression, where microbial communities harbour up to 99% of archaea? Go check what life looks like in these unique places: www.nature.com/articles/s41... @deemteam.bsky.social
Reposted by Benjamin Hepp
Reposted by Benjamin Hepp
Hello 🦋 #protein / #microbio / #BioML community! We are excited to release Gaia🌎, a context-aware protein search tool, extending protein search and discovery capabilities beyond sequence and structure, to include *genomic context*. Search your favorite protein sequences with on gaia.tatta.bio
November 19, 2024 at 3:07 PM
Hello 🦋 #protein / #microbio / #BioML community! We are excited to release Gaia🌎, a context-aware protein search tool, extending protein search and discovery capabilities beyond sequence and structure, to include *genomic context*. Search your favorite protein sequences with on gaia.tatta.bio
Reposted by Benjamin Hepp
November 18, 2024 at 12:46 PM
Reposted by Benjamin Hepp
Thrilled to announce Boltz-1, the first open-source and commercially available model to achieve AlphaFold3-level accuracy on biomolecular structure prediction! An exciting collaboration with Jeremy, Saro, and an amazing team at MIT and Genesis Therapeutics. A thread!
November 17, 2024 at 4:20 PM
Thrilled to announce Boltz-1, the first open-source and commercially available model to achieve AlphaFold3-level accuracy on biomolecular structure prediction! An exciting collaboration with Jeremy, Saro, and an amazing team at MIT and Genesis Therapeutics. A thread!
Reposted by Benjamin Hepp
So many keen peeps interested in structural biology.. we have a new unit cell. 🧶🧬
go.bsky.app/HByHiW6
go.bsky.app/HByHiW6
November 17, 2024 at 11:07 AM
So many keen peeps interested in structural biology.. we have a new unit cell. 🧶🧬
go.bsky.app/HByHiW6
go.bsky.app/HByHiW6
Reposted by Benjamin Hepp
If love the smell of autoclaved LB in the morning, this is your starter pack!
Reply here for an add.
go.bsky.app/Mz7MTFE
Reply here for an add.
go.bsky.app/Mz7MTFE
November 15, 2024 at 10:45 PM
If love the smell of autoclaved LB in the morning, this is your starter pack!
Reply here for an add.
go.bsky.app/Mz7MTFE
Reply here for an add.
go.bsky.app/Mz7MTFE