Anil Thanki
@anilthanki.bsky.social
tries to do Bioinformatics at @ebi.embl.org, before at
@earlhaminst.bsky.social
Mastodon: @anilthanki@mastodon.social
@earlhaminst.bsky.social
Mastodon: @anilthanki@mastodon.social
Reposted by Anil Thanki
🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
October 17, 2025 at 1:32 PM
🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
Reposted by Anil Thanki
@opentargets.org just integrated a new differential expression dataset from @expressionatlas.bsky.social includes ~10,000 new evidence for 400 targets and 7 new diseases, adding ~6,000 unique target–disease associations. A huge boost for exploring disease biology & target discovery!
The Open Targets Platform autumn release is out! 🍂
We have ingested the full dataset of over 13 million enhancer-gene regulatory interactions in the human genome across 1,458 DNase-seq experiments covering 369 cell types and tissues from the ENCODE-rE2G model
blog.opentargets.org/open-targets...
We have ingested the full dataset of over 13 million enhancer-gene regulatory interactions in the human genome across 1,458 DNase-seq experiments covering 369 cell types and tissues from the ENCODE-rE2G model
blog.opentargets.org/open-targets...
Open Targets Platform 25.09 has been released!
The September 25 release includes enhancer-gene data predicted by ENCODE-rE2G, molQTL credible sets for targets, new options for the variant structural viewer, and a number of data updates from GWAS C...
blog.opentargets.org
September 22, 2025 at 2:36 PM
@opentargets.org just integrated a new differential expression dataset from @expressionatlas.bsky.social includes ~10,000 new evidence for 400 targets and 7 new diseases, adding ~6,000 unique target–disease associations. A huge boost for exploring disease biology & target discovery!
Reposted by Anil Thanki
And it’s goodbye from me. Final GigaBlog from outgoing EiC @scedmunds.bsky.social on the major changes at GigaScience Press gigasciencejournal.com/blog/and-its...
September 17, 2025 at 4:36 PM
And it’s goodbye from me. Final GigaBlog from outgoing EiC @scedmunds.bsky.social on the major changes at GigaScience Press gigasciencejournal.com/blog/and-its...
Reposted by Anil Thanki
Exciting news! The latest @expressionatlas.bsky.social bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾 🌽 contributed by our Gramene Database collaborators. Don't miss out! 🧬
July 20, 2025 at 1:35 PM
Exciting news! The latest @expressionatlas.bsky.social bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾 🌽 contributed by our Gramene Database collaborators. Don't miss out! 🧬
Reposted by Anil Thanki
The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.
www.embl.org/training/ari...
www.embl.org/training/ari...
July 11, 2025 at 1:03 PM
The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.
www.embl.org/training/ari...
www.embl.org/training/ari...
Reposted by Anil Thanki
We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
We have a curator position at @ebi.embl.org to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July.
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Scientific Database Curator – Fibrosis Transcriptomics
We are seeking a technically skilled and biologically literate Scientific Database Curator to join a focused initiative on fibrosis research, hosted at EMBL-EBI in collaboration with the Saez-Rodrigue...
embl.wd103.myworkdayjobs.com
July 8, 2025 at 8:21 AM
We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
Reposted by Anil Thanki
Our bioinformaticians will be attending #ISMBECCB2025!
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
June 25, 2025 at 9:15 AM
Our bioinformaticians will be attending #ISMBECCB2025!
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
Reposted by Anil Thanki
This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
March 4, 2025 at 9:20 AM
This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
Reposted by Anil Thanki
Thank you to everyone who attended the ELIXIR Spatial Transcriptomics FAIR Data Management Workshop over the last two days, both @ebi.embl.org and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful.
February 28, 2025 at 10:01 AM
Thank you to everyone who attended the ELIXIR Spatial Transcriptomics FAIR Data Management Workshop over the last two days, both @ebi.embl.org and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful.
Reposted by Anil Thanki
Our bioinformatics arm of the Functional Genomics Team and
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Hackathon - March 2025 (Online / Distributed)
A virtual hackathon with local sites to develop nf-core together
nf-co.re
February 12, 2025 at 8:42 PM
Our bioinformatics arm of the Functional Genomics Team and
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Reposted by Anil Thanki
The Freiburg Galaxy Team is happy to announce this year's European Galaxy Days https://galaxyproject.org/events/2025-10-01-egd2025/ . Please mark you calendar: October 1st to 3rd
We are looking forward seeing you in Freiburg !
##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC
We are looking forward seeing you in Freiburg !
##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC
European Galaxy Days (EGD)
European Galaxy Days meeting in Autumn 2025
galaxyproject.org
February 10, 2025 at 2:48 PM
The Freiburg Galaxy Team is happy to announce this year's European Galaxy Days https://galaxyproject.org/events/2025-10-01-egd2025/ . Please mark you calendar: October 1st to 3rd
We are looking forward seeing you in Freiburg !
##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC
We are looking forward seeing you in Freiburg !
##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC
Reposted by Anil Thanki
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025
Registration for SCO Spatial Data Meeting (26th Feb, 2025)
The SCO Spatial Data FAIR Meeting will take place on the 26th of February, 2025 at EMBL-EBI, UK. The event will take place from 12.00pm, 26th February to 1.30pm, 27th February, and will discuss metada...
tinyurl.com
February 4, 2025 at 2:51 PM
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025
Reposted by Anil Thanki
🧬🌊 PhD Opportunity in Conservation Genomics 🌊🧬
🤝🏻Join our team @livuni-ismib.bsky.social & CEFAS for a funded CASE PhD project! Tackle climate change impact on fisheries management through genomics and bioinformatics: www.findaphd.com/phds/project...
👉Webinar: 4 Dec www.findaphd.com/common/click...
🤝🏻Join our team @livuni-ismib.bsky.social & CEFAS for a funded CASE PhD project! Tackle climate change impact on fisheries management through genomics and bioinformatics: www.findaphd.com/phds/project...
👉Webinar: 4 Dec www.findaphd.com/common/click...
November 26, 2024 at 4:56 PM
🧬🌊 PhD Opportunity in Conservation Genomics 🌊🧬
🤝🏻Join our team @livuni-ismib.bsky.social & CEFAS for a funded CASE PhD project! Tackle climate change impact on fisheries management through genomics and bioinformatics: www.findaphd.com/phds/project...
👉Webinar: 4 Dec www.findaphd.com/common/click...
🤝🏻Join our team @livuni-ismib.bsky.social & CEFAS for a funded CASE PhD project! Tackle climate change impact on fisheries management through genomics and bioinformatics: www.findaphd.com/phds/project...
👉Webinar: 4 Dec www.findaphd.com/common/click...