Expression Atlas
@expressionatlas.bsky.social
Expression Atlas and Single Cell Expression Atlas are @ebi.embl.org open science resources for #Gene and #Protein Expression. Follow us for release news & tips
https://www.ebi.ac.uk/gxa and https://www.ebi.ac.uk/gxa/sc
https://www.ebi.ac.uk/gxa and https://www.ebi.ac.uk/gxa/sc
🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
October 17, 2025 at 1:32 PM
🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa
@ebi.embl.org
@opentargets.org just integrated a new differential expression dataset from @expressionatlas.bsky.social includes ~10,000 new evidence for 400 targets and 7 new diseases, adding ~6,000 unique target–disease associations. A huge boost for exploring disease biology & target discovery!
The Open Targets Platform autumn release is out! 🍂
We have ingested the full dataset of over 13 million enhancer-gene regulatory interactions in the human genome across 1,458 DNase-seq experiments covering 369 cell types and tissues from the ENCODE-rE2G model
blog.opentargets.org/open-targets...
We have ingested the full dataset of over 13 million enhancer-gene regulatory interactions in the human genome across 1,458 DNase-seq experiments covering 369 cell types and tissues from the ENCODE-rE2G model
blog.opentargets.org/open-targets...
Open Targets Platform 25.09 has been released!
The September 25 release includes enhancer-gene data predicted by ENCODE-rE2G, molQTL credible sets for targets, new options for the variant structural viewer, and a number of data updates from GWAS C...
blog.opentargets.org
September 22, 2025 at 2:36 PM
@opentargets.org just integrated a new differential expression dataset from @expressionatlas.bsky.social includes ~10,000 new evidence for 400 targets and 7 new diseases, adding ~6,000 unique target–disease associations. A huge boost for exploring disease biology & target discovery!
Exciting news! The latest @expressionatlas.bsky.social bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾 🌽 contributed by our Gramene Database collaborators. Don't miss out! 🧬
July 20, 2025 at 1:35 PM
Exciting news! The latest @expressionatlas.bsky.social bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾 🌽 contributed by our Gramene Database collaborators. Don't miss out! 🧬
The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.
www.embl.org/training/ari...
www.embl.org/training/ari...
July 11, 2025 at 1:03 PM
The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.
www.embl.org/training/ari...
www.embl.org/training/ari...
We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
We have a curator position at @ebi.embl.org to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July.
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Scientific Database Curator – Fibrosis Transcriptomics
We are seeking a technically skilled and biologically literate Scientific Database Curator to join a focused initiative on fibrosis research, hosted at EMBL-EBI in collaboration with the Saez-Rodrigue...
embl.wd103.myworkdayjobs.com
July 8, 2025 at 8:21 AM
We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
Our bioinformaticians will be attending #ISMBECCB2025!
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
June 25, 2025 at 9:15 AM
Our bioinformaticians will be attending #ISMBECCB2025!
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq
#ISMBECCB #ISMB #ECCB #singlecell
Reposted by Expression Atlas
Can AI train on my openly licensed research? Do I retain copyright if I choose a CC BY license? Why can’t I reuse a figure from my own paper?
Get the answers in a webinar with Creative Commons, #EuropePMC & EMBL
🗓️ 9 Jul
⏰ 15:00 UTC
🔗 embl-org.zoom.us/webinar/regi...
#OpenScience #AcademicSky 🧪
Get the answers in a webinar with Creative Commons, #EuropePMC & EMBL
🗓️ 9 Jul
⏰ 15:00 UTC
🔗 embl-org.zoom.us/webinar/regi...
#OpenScience #AcademicSky 🧪
June 23, 2025 at 9:02 AM
Can AI train on my openly licensed research? Do I retain copyright if I choose a CC BY license? Why can’t I reuse a figure from my own paper?
Get the answers in a webinar with Creative Commons, #EuropePMC & EMBL
🗓️ 9 Jul
⏰ 15:00 UTC
🔗 embl-org.zoom.us/webinar/regi...
#OpenScience #AcademicSky 🧪
Get the answers in a webinar with Creative Commons, #EuropePMC & EMBL
🗓️ 9 Jul
⏰ 15:00 UTC
🔗 embl-org.zoom.us/webinar/regi...
#OpenScience #AcademicSky 🧪
🔧 Dear users: Due to EBI-wide maintenance, Annotare will be unavailable today (Thurs 19 June) from 12pm to 1pm BST.
During this time, submission creation or editing will not be possible.
We apologise for the inconvenience and appreciate your understanding.
During this time, submission creation or editing will not be possible.
We apologise for the inconvenience and appreciate your understanding.
June 19, 2025 at 10:13 AM
🔧 Dear users: Due to EBI-wide maintenance, Annotare will be unavailable today (Thurs 19 June) from 12pm to 1pm BST.
During this time, submission creation or editing will not be possible.
We apologise for the inconvenience and appreciate your understanding.
During this time, submission creation or editing will not be possible.
We apologise for the inconvenience and appreciate your understanding.
This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
March 4, 2025 at 9:20 AM
This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org
Thank you to everyone who attended the ELIXIR Spatial Transcriptomics FAIR Data Management Workshop over the last two days, both @ebi.embl.org and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful.
February 28, 2025 at 10:01 AM
Thank you to everyone who attended the ELIXIR Spatial Transcriptomics FAIR Data Management Workshop over the last two days, both @ebi.embl.org and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful.
Our bioinformatics arm of the Functional Genomics Team and
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).
Registration is now open! 🎟
nf-co.re/events/2025/...
Hackathon - March 2025 (Online / Distributed)
A virtual hackathon with local sites to develop nf-core together
nf-co.re
February 12, 2025 at 8:42 PM
Our bioinformatics arm of the Functional Genomics Team and
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.
Check out our challenge and join us, everyone is welcome!
@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025
Registration for SCO Spatial Data Meeting (26th Feb, 2025)
The SCO Spatial Data FAIR Meeting will take place on the 26th of February, 2025 at EMBL-EBI, UK. The event will take place from 12.00pm, 26th February to 1.30pm, 27th February, and will discuss metada...
tinyurl.com
February 4, 2025 at 2:51 PM
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025