Andre Rendeiro
@andre-rendeiro.com
Principal Investigator at CeMM and LBI-NetMed: https://rendeiro.group
Computational Biology of Aging and Pathology
Computational Biology of Aging and Pathology
Pinned
Andre Rendeiro
@andre-rendeiro.com
· Oct 15
New work from Iva Buljan @ivabuljan.bsky.social in our lab!
We mapped how human tissue architecture changes with age using ~25k histology slides from 983 donors.
This is the first body-wide atlas of human microanatomy.
📄 Preprint: www.biorxiv.org/content/10.1...
We mapped how human tissue architecture changes with age using ~25k histology slides from 983 donors.
This is the first body-wide atlas of human microanatomy.
📄 Preprint: www.biorxiv.org/content/10.1...
Warm welcome to Maria and my very best wishes to her as CeMM director - excited for the future of our institute!
CeMM & ÖAW warmly welcome Maria Rescigno as the new CeMM Director. Maria is a highly accomplished researcher specialized in the understanding of the gut–liver–brain axis.
Press info: https://cemm.at/news
Photo Gallery: https://cemm.at/about-cemm/picture-galleries/2025
#CeMMLife #Director #ÖAW
Press info: https://cemm.at/news
Photo Gallery: https://cemm.at/about-cemm/picture-galleries/2025
#CeMMLife #Director #ÖAW
November 10, 2025 at 6:09 PM
Warm welcome to Maria and my very best wishes to her as CeMM director - excited for the future of our institute!
Reposted by Andre Rendeiro
Thank you, Marco Demaria (UMCG), for a great #CeMMinar on heterogeneity in cellular #senescence! He shared how senescent cells can both aid tissue repair & drive aging & dysfunction, & how targeting them could support healthy aging. Thanks to our hosts @lderooij.bsky.social & @andre-rendeiro.com
November 10, 2025 at 3:00 PM
Thank you, Marco Demaria (UMCG), for a great #CeMMinar on heterogeneity in cellular #senescence! He shared how senescent cells can both aid tissue repair & drive aging & dysfunction, & how targeting them could support healthy aging. Thanks to our hosts @lderooij.bsky.social & @andre-rendeiro.com
Reposted by Andre Rendeiro
CeMM & ÖAW warmly welcome Maria Rescigno as the new CeMM Director. Maria is a highly accomplished researcher specialized in the understanding of the gut–liver–brain axis.
Press info: https://cemm.at/news
Photo Gallery: https://cemm.at/about-cemm/picture-galleries/2025
#CeMMLife #Director #ÖAW
Press info: https://cemm.at/news
Photo Gallery: https://cemm.at/about-cemm/picture-galleries/2025
#CeMMLife #Director #ÖAW
November 10, 2025 at 8:00 AM
CeMM & ÖAW warmly welcome Maria Rescigno as the new CeMM Director. Maria is a highly accomplished researcher specialized in the understanding of the gut–liver–brain axis.
Press info: https://cemm.at/news
Photo Gallery: https://cemm.at/about-cemm/picture-galleries/2025
#CeMMLife #Director #ÖAW
Press info: https://cemm.at/news
Photo Gallery: https://cemm.at/about-cemm/picture-galleries/2025
#CeMMLife #Director #ÖAW
Installed #Rstats for the first time in a year - my laptop ran out of battery before I managed to install 2 libraries... 🤕
After working with `uv` for some time, I don't think I can suffer this experience :pain:
After working with `uv` for some time, I don't think I can suffer this experience :pain:
November 4, 2025 at 8:23 PM
Installed #Rstats for the first time in a year - my laptop ran out of battery before I managed to install 2 libraries... 🤕
After working with `uv` for some time, I don't think I can suffer this experience :pain:
After working with `uv` for some time, I don't think I can suffer this experience :pain:
One more reason to love Python! Thank you for staying true to your values ❤️
TLDR; The PSF has made the decision to put our community and our shared diversity, equity, and inclusion values ahead of seeking $1.5M in new revenue. Please read and share. pyfound.blogspot.com/2025/10/NSF-...
🧵
🧵
The official home of the Python Programming Language
www.python.org
October 27, 2025 at 3:08 PM
One more reason to love Python! Thank you for staying true to your values ❤️
Reposted by Andre Rendeiro
Finally, someone has solved a real problem with AI! No more having to take a paper in the format for a journal that rejected you, and reformat it for a new journal. Well done!! formatmypaper.com
October 15, 2025 at 6:33 AM
Finally, someone has solved a real problem with AI! No more having to take a paper in the format for a journal that rejected you, and reformat it for a new journal. Well done!! formatmypaper.com
Reposted by Andre Rendeiro
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
October 15, 2025 at 12:22 PM
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
Reposted by Andre Rendeiro
🧭 Colorectal cancer doesn’t follow a single path.
Using spatial proteomics on ~500 tumors, we found distinct trajectories from early to late stage, involving the whole tumor microenvironment and its metabolic state.
📄 Preprint: arxiv.org/abs/2510.05083
#SpatialBiology #CRC #ImageBasedProfiling
1/5
Using spatial proteomics on ~500 tumors, we found distinct trajectories from early to late stage, involving the whole tumor microenvironment and its metabolic state.
📄 Preprint: arxiv.org/abs/2510.05083
#SpatialBiology #CRC #ImageBasedProfiling
1/5
Robust multicellular programs dissect the complex tumor microenvironment and track disease progression in colorectal adenocarcinomas
Colorectal cancer (CRC) is highly heterogeneous, with five-year survival rates dropping from $\sim$90% in localized disease to $\sim$15% with distant metastases. Disease progression is shaped not only...
arxiv.org
October 8, 2025 at 5:01 PM
🧭 Colorectal cancer doesn’t follow a single path.
Using spatial proteomics on ~500 tumors, we found distinct trajectories from early to late stage, involving the whole tumor microenvironment and its metabolic state.
📄 Preprint: arxiv.org/abs/2510.05083
#SpatialBiology #CRC #ImageBasedProfiling
1/5
Using spatial proteomics on ~500 tumors, we found distinct trajectories from early to late stage, involving the whole tumor microenvironment and its metabolic state.
📄 Preprint: arxiv.org/abs/2510.05083
#SpatialBiology #CRC #ImageBasedProfiling
1/5
New work from Iva Buljan @ivabuljan.bsky.social in our lab!
We mapped how human tissue architecture changes with age using ~25k histology slides from 983 donors.
This is the first body-wide atlas of human microanatomy.
📄 Preprint: www.biorxiv.org/content/10.1...
We mapped how human tissue architecture changes with age using ~25k histology slides from 983 donors.
This is the first body-wide atlas of human microanatomy.
📄 Preprint: www.biorxiv.org/content/10.1...
October 15, 2025 at 6:29 AM
New work from Iva Buljan @ivabuljan.bsky.social in our lab!
We mapped how human tissue architecture changes with age using ~25k histology slides from 983 donors.
This is the first body-wide atlas of human microanatomy.
📄 Preprint: www.biorxiv.org/content/10.1...
We mapped how human tissue architecture changes with age using ~25k histology slides from 983 donors.
This is the first body-wide atlas of human microanatomy.
📄 Preprint: www.biorxiv.org/content/10.1...
Reposted by Andre Rendeiro
We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST! Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis.
(Zoom registration link and more information in thread!)
🧵
(Zoom registration link and more information in thread!)
🧵
October 13, 2025 at 3:54 PM
We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST! Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis.
(Zoom registration link and more information in thread!)
🧵
(Zoom registration link and more information in thread!)
🧵
The LBI-NetMed in Vienna is looking for an Administrative Manager to power our research operations. Key role in finance, HR, and partner coordination.
Apply here: lbg.ac.at/news/adminis...
#ResearchJobs #ScienceAdmin #LBINetMed #Vienna #JobAlert
Apply here: lbg.ac.at/news/adminis...
#ResearchJobs #ScienceAdmin #LBINetMed #Vienna #JobAlert
Administrative Manager:in (m/w/d) – Ludwig Boltzmann Gesellschaft
Forschung, die beim Menschen ankommt.
lbg.ac.at
October 2, 2025 at 1:49 PM
The LBI-NetMed in Vienna is looking for an Administrative Manager to power our research operations. Key role in finance, HR, and partner coordination.
Apply here: lbg.ac.at/news/adminis...
#ResearchJobs #ScienceAdmin #LBINetMed #Vienna #JobAlert
Apply here: lbg.ac.at/news/adminis...
#ResearchJobs #ScienceAdmin #LBINetMed #Vienna #JobAlert
Great to be at the 2025 @OeGMBT meeting in Innsbruck and hear the diverse research made by the local community, in particular by the young researchers who presented their work.
Thank you to the organizers, and to Markus Mandl for the invitation to talk!
Thank you to the organizers, and to Markus Mandl for the invitation to talk!
September 26, 2025 at 6:58 PM
Great to be at the 2025 @OeGMBT meeting in Innsbruck and hear the diverse research made by the local community, in particular by the young researchers who presented their work.
Thank you to the organizers, and to Markus Mandl for the invitation to talk!
Thank you to the organizers, and to Markus Mandl for the invitation to talk!
Reposted by Andre Rendeiro
CAR T cells showcase the enormous potential of cell therapies, but often fail due to lack of evolutionary optimization. Today in @nature.com , we use #CELLFIE to engineer cell therapies at scale and share the largest resource of CRISPR screens in CAR T cells. www.nature.com/articles/s41...
Systematic discovery of CRISPR-boosted CAR T cell immunotherapies - Nature
CELLFIE, a CRISPR platform for optimizing cell-based immunotherapies, identifies gene knockouts that enhance CAR T cell efficacy using in vitro and in vivo screens.
www.nature.com
September 24, 2025 at 3:44 PM
CAR T cells showcase the enormous potential of cell therapies, but often fail due to lack of evolutionary optimization. Today in @nature.com , we use #CELLFIE to engineer cell therapies at scale and share the largest resource of CRISPR screens in CAR T cells. www.nature.com/articles/s41...
Congratulations to Lisa Kleissl in our group, who won the best short talk award at the FEBS Advanced Course on Immunology, metabolism and ageing in Matrei am Brenner, Austria!
September 12, 2025 at 8:20 AM
Congratulations to Lisa Kleissl in our group, who won the best short talk award at the FEBS Advanced Course on Immunology, metabolism and ageing in Matrei am Brenner, Austria!
Reposted by Andre Rendeiro
So, right now, the only reliable way to diagnose endometriosis is with exploratory surgery. But finally, real scientists (instead of male scientists), are on the job & of course they’ve identified multiple markers in menstrual blood that point to noninvasive testing.
www.science.org/content/arti...
www.science.org/content/arti...
Driven by the pain of endometriosis, this scientist is uncovering clues to its causes
Katie Burns is helping reveal the immune system’s role in the long-neglected disease
www.science.org
September 10, 2025 at 6:10 AM
So, right now, the only reliable way to diagnose endometriosis is with exploratory surgery. But finally, real scientists (instead of male scientists), are on the job & of course they’ve identified multiple markers in menstrual blood that point to noninvasive testing.
www.science.org/content/arti...
www.science.org/content/arti...
Reposted by Andre Rendeiro
Reposted by Andre Rendeiro
Exciting FULL PROFESSORSHIP at the Vienna BioCenter - Molecular Mechanisms of Disease Mechanisms: www.maxperutzlabs.ac.at/news/open-po... Come be our colleague!
Full Professorship in Molecular Mechanisms of Disease
The Max Perutz Labs - one of Europe’s leading institutes for basic research in the life sciences - invite applications for a Full Professorship in Molecular Mechanisms of Disease. We are seeking outst...
www.maxperutzlabs.ac.at
September 4, 2025 at 10:25 AM
Exciting FULL PROFESSORSHIP at the Vienna BioCenter - Molecular Mechanisms of Disease Mechanisms: www.maxperutzlabs.ac.at/news/open-po... Come be our colleague!
Thrilled to share that our lab has been awarded an ERC Starting Grant for QUANTAGE! 🎉 We will build a quantitative framework of tissue architecture to bridge molecules, cells, tissues & organs — uncovering how aging unfolds and disease begins.
🎉 Congratulations to CeMM PI @andre-rendeiro.com on receiving an #ERCStG by @erc.europa.eu
His project will map how #aging manifests across cells, tissues & organs, paving the way for new insights into age-related diseases.
📄 Read more: https://bit.ly/4mQg3ii
🎥 Video: https://bit.ly/3UY7Lsb
His project will map how #aging manifests across cells, tissues & organs, paving the way for new insights into age-related diseases.
📄 Read more: https://bit.ly/4mQg3ii
🎥 Video: https://bit.ly/3UY7Lsb
September 4, 2025 at 1:06 PM
Thrilled to share that our lab has been awarded an ERC Starting Grant for QUANTAGE! 🎉 We will build a quantitative framework of tissue architecture to bridge molecules, cells, tissues & organs — uncovering how aging unfolds and disease begins.
Our group is in Gumpoldskirchen, Austria, for our first lab retreat!
It is a fantastic opportunity to get together and discuss our research projects, share ideas, and engage in some team building. A big thank you to everyone in the team, who together make it a privilege and honor to do this job.
It is a fantastic opportunity to get together and discuss our research projects, share ideas, and engage in some team building. A big thank you to everyone in the team, who together make it a privilege and honor to do this job.
September 3, 2025 at 4:19 PM
Our group is in Gumpoldskirchen, Austria, for our first lab retreat!
It is a fantastic opportunity to get together and discuss our research projects, share ideas, and engage in some team building. A big thank you to everyone in the team, who together make it a privilege and honor to do this job.
It is a fantastic opportunity to get together and discuss our research projects, share ideas, and engage in some team building. A big thank you to everyone in the team, who together make it a privilege and honor to do this job.
Yimin Zheng from our lab presented LazySlide, our framework for whole-slide image analysis, at the Sydney Statistical Bioinformatics Seminar Series 🎉
📺 Watch the talk: www.youtube.com/watch?v=PZAp...
🔗 More from the awesome series: www.youtube.com/@SydneyDataS...
Big thanks to the organizers!
📺 Watch the talk: www.youtube.com/watch?v=PZAp...
🔗 More from the awesome series: www.youtube.com/@SydneyDataS...
Big thanks to the organizers!
The lazy way of pathological images analysis in the era of large models
YouTube video by Sydney Precision Data Science Centre
www.youtube.com
August 19, 2025 at 10:57 AM
Yimin Zheng from our lab presented LazySlide, our framework for whole-slide image analysis, at the Sydney Statistical Bioinformatics Seminar Series 🎉
📺 Watch the talk: www.youtube.com/watch?v=PZAp...
🔗 More from the awesome series: www.youtube.com/@SydneyDataS...
Big thanks to the organizers!
📺 Watch the talk: www.youtube.com/watch?v=PZAp...
🔗 More from the awesome series: www.youtube.com/@SydneyDataS...
Big thanks to the organizers!
Reposted by Andre Rendeiro
Since search is dead, how soon do you think Google Scholar is headed for the Google Graveyard? I'm betting it's soon, and academia is NOT prepared
Google Scholar Is Doomed
Academia built entire careers on a free Google service with zero guarantees. What could go wrong?
hannahshelley.neocities.org
August 13, 2025 at 1:28 AM
Since search is dead, how soon do you think Google Scholar is headed for the Google Graveyard? I'm betting it's soon, and academia is NOT prepared
Reposted by Andre Rendeiro
Have $10M and want to cure some diseases?
It costs ~$1B to invent a new medicine…but $10M buys you Project Encore, to see if ANY existing drug might be repurposed for ~100 diseases that have no treatments.
Contact me - be a hero for desperate patients!
docs.google.com/document/d/1...
It costs ~$1B to invent a new medicine…but $10M buys you Project Encore, to see if ANY existing drug might be repurposed for ~100 diseases that have no treatments.
Contact me - be a hero for desperate patients!
docs.google.com/document/d/1...
August 5, 2025 at 12:06 PM
Have $10M and want to cure some diseases?
It costs ~$1B to invent a new medicine…but $10M buys you Project Encore, to see if ANY existing drug might be repurposed for ~100 diseases that have no treatments.
Contact me - be a hero for desperate patients!
docs.google.com/document/d/1...
It costs ~$1B to invent a new medicine…but $10M buys you Project Encore, to see if ANY existing drug might be repurposed for ~100 diseases that have no treatments.
Contact me - be a hero for desperate patients!
docs.google.com/document/d/1...
🚨 We're hiring! The Rendeiro Lab @cemm.oeaw.ac.at is looking for a data scientist or software engineer to work on open-source tools for spatial, histological & multimodal data.
Ad: www.nature.com/naturecareer...
More info: rendeiro.group
Ad: www.nature.com/naturecareer...
More info: rendeiro.group
Data Scientist / Software Engineer in Computational Biology (f/m/d) - Vienna (Landbezirke) (AT) job with Research Center for Molecular Medicine (CeMM), ÖAW | 12842231
The Rendeiro lab at CeMM is recruiting a highly motivated data scientist to join our international team studying human aging and pathology.
www.nature.com
August 5, 2025 at 9:43 AM
🚨 We're hiring! The Rendeiro Lab @cemm.oeaw.ac.at is looking for a data scientist or software engineer to work on open-source tools for spatial, histological & multimodal data.
Ad: www.nature.com/naturecareer...
More info: rendeiro.group
Ad: www.nature.com/naturecareer...
More info: rendeiro.group
Join two powerhouses of research driving innovation in artificial intelligence and biomedicine in Vienna!
My group will be recruiting a PhD student to continue and extend our work on spatially resolved study of aging via principled computational approaches:
rendeiro.group
apply.cemm.at
My group will be recruiting a PhD student to continue and extend our work on spatially resolved study of aging via principled computational approaches:
rendeiro.group
apply.cemm.at
Apply for the AITHYRA-CeMM International PhD Program!
15-20 fully funded PhD fellowships available in Vienna, AT
in AI/ML and Life Sciences
Deadline for applications:
10 September 2025 apply.cemm.at
15-20 fully funded PhD fellowships available in Vienna, AT
in AI/ML and Life Sciences
Deadline for applications:
10 September 2025 apply.cemm.at
July 28, 2025 at 2:31 PM
Join two powerhouses of research driving innovation in artificial intelligence and biomedicine in Vienna!
My group will be recruiting a PhD student to continue and extend our work on spatially resolved study of aging via principled computational approaches:
rendeiro.group
apply.cemm.at
My group will be recruiting a PhD student to continue and extend our work on spatially resolved study of aging via principled computational approaches:
rendeiro.group
apply.cemm.at
Reposted by Andre Rendeiro
Excited to share a new preprint from the lab with @ryandhindsa.bsky.social ! www.biorxiv.org/content/10.1...
Led by @sherrynyeo.bsky.social, @erinmayc.bsky.social, and friends, we continue our journey to find viral DNA in our favorite place-- the overlooked and discarded reads in existing data! 1/
Led by @sherrynyeo.bsky.social, @erinmayc.bsky.social, and friends, we continue our journey to find viral DNA in our favorite place-- the overlooked and discarded reads in existing data! 1/
July 22, 2025 at 9:59 PM
Excited to share a new preprint from the lab with @ryandhindsa.bsky.social ! www.biorxiv.org/content/10.1...
Led by @sherrynyeo.bsky.social, @erinmayc.bsky.social, and friends, we continue our journey to find viral DNA in our favorite place-- the overlooked and discarded reads in existing data! 1/
Led by @sherrynyeo.bsky.social, @erinmayc.bsky.social, and friends, we continue our journey to find viral DNA in our favorite place-- the overlooked and discarded reads in existing data! 1/