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scverse
@scverse.bsky.social
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Foundational tools for omics data (mostly in python).
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scverse.bsky.social
scverse @scverse.bsky.social · Aug 2
🎉 scverse conference 2025 Registration & Call for Abstracts NOW OPEN! 🎉
We're excited to announce that registration and the call for abstracts are officially open for the scverse Conference 2025!
Details in thread!
🧵 1/3
scverse.bsky.social
We just released scanpy 1.12rc1 (scanpy.readthedocs.io/en/latest/re...)

Highlights:
- Dask support in `sc.get.aggregate` for pseudobatching + `highly_variable_genes(flavor='seurat_v3')`
- More functions allow specifying `layers` and `obsm`
- Turn off quirky behavior (new defaults for scanpy 2.0)
Release notes
Version 1.12: 1.12.0rc1 2025-11-10: Breaking changes: Adopt the Scientific Python deprecation schedule: remove Python ≤3.11 support and officially add Python 3.13 and 3.14 support, require anndata≥...
scanpy.readthedocs.io
November 11, 2025 at 10:55 AM
scverse.bsky.social
We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST!

Eric Armingol will be presenting on scCellFie!

More information and Zoom registration link in 🧵
November 10, 2025 at 3:16 PM
Reposted by scverse
lukasheumos.bsky.social
Excited to see a home for MCP servers in bioinformatics emerge! The community needs a central hub for developing MCP servers for key bioinfo tools. At @scverse.bsky.social we're contributing to this effort - can't wait to share what we're building
November 6, 2025 at 7:28 PM
scverse.bsky.social
Meet the keynote speakers for the 2025 scverse conference!

Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University
🧵

@elhamazizi.bsky.social
@columbiauniversity.bsky.social

#scverse #scverse2025 #machinelearning #genomics #cancerimmunology
November 6, 2025 at 3:59 PM
scverse.bsky.social
We're pleased to announce that we are now offering online attendance via Zoom.

Remote attendance is available for 30 USD, and you can secure your spot by registering at www.eventbrite.com/e/scverse-co....

We hope to see you online at the conference!
Scverse Conference 2025
From the foundational open-source software in the life sciences — to its large community coming together
www.eventbrite.com
November 6, 2025 at 4:14 AM
scverse.bsky.social
We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST!

Eric Armingol will be presenting on scCellFie!

More information and Zoom registration link in 🧵
November 5, 2025 at 4:39 PM
scverse.bsky.social
Meet the keynote speakers for the 2025 scverse conference!

Erika Alden DeBenedictis, Co-founder of The Align Foundation 🧵

@erika-alden.bsky.social
@alignbio.bsky.social
@pioneerlabs.bsky.social

#scverse #scverse2025 #StructuralBiology #Biotech #Stanford
November 4, 2025 at 4:38 PM
scverse.bsky.social
Meet the keynote speakers for the 2025 scverse conference!

John Marioni, Head of Computation at Genentech Research and Early Development and former head of EBI
🧵

#scverse #scverse2025 #AI #DrugDevelopment #MachineLearning #ComputationalBiology #Biotech #Pharma #Genentech
October 30, 2025 at 3:18 PM
scverse.bsky.social
Meet the keynote speakers for the 2025 scverse conference!

Panos Roussos, Professor at Icahn School of Medicine at Mount Sinai 🧵

@panosroussos.bsky.social
#scverse #scverse2025 #SingleCell #SpatialTranscriptomics #Conference #Keynote
October 28, 2025 at 4:00 PM
scverse.bsky.social
We will have our next community meeting on Tuesday, 2025-10-28 at 18:00 CEST!
@kexinhuang.bsky.social will be presenting on Biomni: Building a Virtual Biomedical Scientist.

(Zoom registration link and more information in thread!)
🧵
October 27, 2025 at 3:57 PM
scverse.bsky.social
We will have our next community meeting on Tuesday, 2025-10-28 at 18:00 CEST! @kexinhuang.bsky.social will be presenting on Biomni: Building a Virtual Biomedical Scientist.

(Zoom registration link and more information in thread!)
🧵
October 24, 2025 at 3:55 PM
scverse.bsky.social
🌟 Thank You to Our Diamond Sponsor: Somite! 🌟

We're thrilled to recognize Somite as a Diamond Sponsor of scverse conference 2025! 💎

#scverse2025 #ComputationalBiology #SingleCell #FoundationModels #CellTherapy #RegenerativeMedicine #AIinBiology
October 23, 2025 at 4:13 PM
scverse.bsky.social
🌟 Thank You to Our Gold Sponsor: Genentech! 🌟

We're delighted to recognize Genentech as a Gold Sponsor of scverse conference 2025! 🏆

#scverse2025 #ComputationalBiology #SingleCell #DrugDiscovery #Genentech #SpatialOmics #Bioinformatics #Biotechnology
October 21, 2025 at 4:54 PM
scverse.bsky.social
🌟 Thank You to Our Platinum Sponsor: 10x Genomics! 🌟

We're delighted to recognize 10x Genomics as a Platinum Sponsor of scverse conference 2025! 🏆

@10xgenomics.bsky.social
#scverse2025 #ComputationalBiology #SingleCell #SpatialOmics #10xGenomics #Bioinformatics #Biotechnology
October 16, 2025 at 3:11 PM
scverse.bsky.social
🧬 Tahoe Workshop at scverse conference 2025 🧬

Disease Biology and Therapeutics in the Age of Frontier Datasets

@tahoetherapeutics.bsky.social

#scverse2025 #ComputationalBiology #DrugDiscovery #TahoeTherapeutics #SingleCell #PerturbationBiology
October 15, 2025 at 2:28 PM
scverse.bsky.social
🌟 Thank You to Our Silver Sponsor: Proteintech! 🌟

We're excited to recognize Proteintech as a Silver Sponsor of scverse conference 2025! 🥈

@proteintech.bsky.social
#scverse2025 #Proteintech #ComputationalBiology #SingleCell #Antibodies #ProteomicsTools #SpatialOmics #Bioinformatics
October 14, 2025 at 2:30 PM
scverse.bsky.social
We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST! Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis.

(Zoom registration link and more information in thread!)
🧵
October 13, 2025 at 3:54 PM
scverse.bsky.social
Last call, scverse community!
🐦 Early-bird closes October 17 for the scverse Conference 2025.

Single-cell, open science, and the people behind it — all in one place.
📝 Register here: www.eventbrite.com/e/scverse-co...

2 days of talks + 1 day of workshops
ℹ️ Info: scverse.org/conference2025
October 10, 2025 at 2:48 AM
scverse.bsky.social
🌟 Thank You to Our Gold Sponsor: Stellaromics! 🌟

We're proud to recognize Stellaromics as a Gold Sponsor of scverse conference 2025! 🥇

@stellaromics.bsky.social
#scverse2025 #SpatialBiology #3DSpatial #ComputationalBiology #SingleCell #Stellaromics #SpatialOmics #Bioinformatics
October 9, 2025 at 3:25 PM
scverse.bsky.social
We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST!
Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis.
(Zoom registration link and more information in thread!)
🧵
October 8, 2025 at 3:19 PM
scverse.bsky.social
🧠 Arc Workshop at the upcoming scverse conference 2025 🧠

Processing and Modeling Large-Scale Single-Cell Perturbation Data with Machine Learning
🧵

@arcinstitute.org

#scverse2025 #PerturbSeq #MachineLearning #SingleCell #CRISPR #GenomicScreening #VirtualCells
October 8, 2025 at 2:55 PM
scverse.bsky.social
🌟 Thank You to Our Diamond Sponsor: Chan Zuckerberg Initiative! 🌟

We're thrilled to announce that the Chan Zuckerberg Initiative (CZI) is supporting scverse conference 2025 as a Diamond Sponsor! 💎

@chanzuckerberg.bsky.social
#ComputationalBiology #SingleCell #SpatialOmics #CELLxGENE
October 7, 2025 at 3:18 PM
scverse.bsky.social
ICYMI!
🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀
We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025!

More information in 🧵

#scverse2025 #Bioinformatics #AgenticAI #Conference
October 6, 2025 at 3:26 PM
scverse.bsky.social
🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀
We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025!

More information in 🧵

#scverse2025 #Bioinformatics #AgenticAI #Conference
October 3, 2025 at 3:43 PM
scverse.bsky.social
🌟 Thank You to Our Silver Sponsor: Calico Life Sciences ! 🌟

We're excited to recognize Calico as a Silver Sponsor of scverse conference 2025! 🥈

Details in thread! 🧵
#scverse2025 #AgingResearch #ComputationalBiology #SingleCell #Longevity #CalicoLabs #SpatialOmics
October 2, 2025 at 2:55 PM