Rauf Salamzade
banner
raufs.bsky.social
Rauf Salamzade
@raufs.bsky.social
Interested in microbial ecology & evolution. Views are only my own. (he/him)

🎓: https://scholar.google.com/citations?hl=en&user=OBPpZq4AAAAJ&view_op=list_works&sortby=pubdate
👨‍💻: https://github.com/raufs
Reposted by Rauf Salamzade
I had the fun opportunity to write a Commentary for a JB paper by Bhattarai, Harshey et al. describing their Texas Two-Step model of cdG-mediated motility control.
Commentary: pubmed.ncbi.nlm.nih.gov/41705806/
Paper: journals.asm.org/doi/10.1128/...
@asm.org #JBacteriology
February 19, 2026 at 4:08 PM
Reposted by Rauf Salamzade
Thanks @theviin.bsky.social for the invite to join this great meeting, and share our work on Kaptive for capsule typing, and how we can apply it to inform #klebsiella vaccines: tinyurl.com/npaj4vzr
With @tomstantonmicro.bsky.social @shaunkeegan.bsky.social @katholt.bsky.social and many others
February 19, 2026 at 10:01 PM
Reposted by Rauf Salamzade
A new paper shows that less than 2 months of exposure to Twitter’s algorithmic feed significantly shifts people’s political views to the right.

Moving from chronological feed to the algorithmic feed also increases engagement.

This is one of the most concerning papers I’ve read in awhile.
February 19, 2026 at 6:57 PM
Reposted by Rauf Salamzade
Last year, we proposed a model of plasmid evolution via fusion and fragmentation (via mge mediated recombination) generating mosaics, by studying historical isolates. Excited to see a MASSIVE paper from @jrpenades.bsky.social , @epcrocha.bsky.social expanding on this
www.biorxiv.org/content/10.6...
February 19, 2026 at 11:12 PM
Reposted by Rauf Salamzade
Giant multicellular magnetotactic prokaryotes in marine sediments academic.oup.com/ismej/advanc... #jcampubs
February 17, 2026 at 4:40 PM
Reposted by Rauf Salamzade
Reposted by Rauf Salamzade
Our latest is out today in @plosbiology.org:

"Metabolic modeling reveals determinants of prebiotic and probiotic treatment efficacy across multiple human intervention trials"

@isbscience.org @uwbioe.bsky.social @uwgenome.bsky.social

doi.org/10.1371/jour...
Metabolic modeling reveals determinants of prebiotic and probiotic treatment efficacy across multiple human intervention trials
Prebiotic and probiotic interventions can induce therapeutically relevant shifts in the human microbiome, but their effects are variable across individuals. This study shows that metabolic models can ...
doi.org
February 19, 2026 at 7:59 PM
Reposted by Rauf Salamzade
New online! The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of gut health
The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of gut health
Nature Reviews Gastroenterology & Hepatology, Published online: 18 February 2026; doi:10.1038/s41575-026-01176-xThis Consensus Statement provides a definition of the term ‘gut health’, as well as a discussion of the relevant domains that contribute to gut health and a framework for appropriate use of the term in the context of therapeutic interventions.
dlvr.it
February 18, 2026 at 6:20 PM
Reposted by Rauf Salamzade
Lovely C&EN @cenmag.bsky.social story on the history and personal impact of the cancer drug Taxol. After spending recent years deciphering how yew trees, our source for Taxol, synthesize this lifesaving drug, it’s so nice to see it in the larger context #secmet #medsky
Plants are amazing chemists.
Paclitaxel saved my life. New discoveries could boost supply
After decades, scientists have finally pieced together the 23-step biosynthetic pathway to produce this cancer drug
cen.acs.org
February 18, 2026 at 6:25 PM
Reposted by Rauf Salamzade
Don't miss a review by Liao-Bin Dong & co. at the China Pharmaceutical University in our latest issue examining the strategies and applications for engineering class I terpene synthases for skeletal diversity #natprod #secmet

Check out the full article on our website🔽
Engineering class I terpene synthases for skeletal diversity: strategies and applications
Covering: up to August 2025 Terpenoids constitute nature's largest and most structurally diverse class of natural products, with extensive applications in medicine, agriculture, and fragrance…
pubs.rsc.org
February 19, 2026 at 9:45 AM
Reposted by Rauf Salamzade
How to make phages work for you! A big hurdle is you. 🧪 🦠 mGem: Immune recognition and clearance of bacteriophages—implications for phage therapy | mBio journals.asm.org/doi/10.1128/...
mGem: Immune recognition and clearance of bacteriophages—implications for phage therapy | mBio
Bacteriophages (phages) are viruses that exclusively infect bacteria and cannot replicate within eukaryotic cells in the absence of their bacterial host. Discovered in 1915 (1, 2), more than 10 years ...
journals.asm.org
January 5, 2026 at 12:59 PM
Reposted by Rauf Salamzade
Papers are like buses... You wait for ages, then two come along at once.

Huge congrats to @bornanovak.bsky.social and @jefflotthammer.bsky.social for pushing and driving every aspect of this work, preprinted ~1 year ago to the day (Friday before BPS), now published!

www.nature.com/articles/s41...
February 19, 2026 at 3:30 AM
Reposted by Rauf Salamzade
Congratulations to Sonomi Yamaguchi for her paper at @nature.com. Sonomi discovered Clover defense and explained how nucleotide signals control each step of viral sensing, immune regulation, and viral restriction – named for her beautiful "four-leaf" structures 🍀

www.nature.com/articles/s41...
February 18, 2026 at 5:11 PM
Reposted by Rauf Salamzade
One of the biggest questions in biology is how complex cells evolved about 2 billion years ago. Here's my new story on how scientists are solving the mystery of eukaryotes like us. Gift link: nyti.ms/4qMbo22
February 18, 2026 at 7:17 PM
Reposted by Rauf Salamzade
New preprint out! Anjali Sapre, Melissa Martin and co. mapped the evolutionary routes of convergence in K pneumo. Pop analysis of >1,400 global genomes & 7,500 closed plasmids to see how #AMR & virulence genes come together and impact phenotypes. www.researchsquare.com/article/rs-8...
Preferred evolutionary routes of convergence in Klebsiella pneumoniae favor siderophore acquisition over hypervirulence
The rise of Klebsiella pneumoniae combining antimicrobial resistance and virulence genes poses a major health threat, but the evolutionary routes and phenotypic consequences of this convergence are po...
www.researchsquare.com
February 18, 2026 at 8:28 PM
Reposted by Rauf Salamzade
Reposted by Rauf Salamzade
Carrying over 100 resistance genes is ..a lot. Am tempted to go look. But maybe that includes intrinsics and efflux etc
February 18, 2026 at 6:39 PM
Reposted by Rauf Salamzade
New paper! Why are some Nitrogen fixing microbes more complex?

@msobol.bsky.social et al. find that microbes with more N2-fixation genes have larger, more versatile genomes, showing how changing environments shaped this key metabolism!

> academic.oup.com/ismecommun/a... @isme-microbes.bsky.social
Ecological constraints and evolutionary trade-offs shape nitrogen fixation across habitats
Abstract. From its earliest beginnings, life’s expansion into new habitats has been profoundly shaped by its reciprocal interactions with Earth’s changing
academic.oup.com
February 6, 2026 at 4:44 PM
Reposted by Rauf Salamzade
📣new preprint from the phagefoundry.org team 🎉 Jessica Trinh and Catherine Mageeney (Sandia National Laboratories)!!

Systematic analysis of prophages from ~1000 Acinetobacter baumannii isolates, induction & screening. We found this 😎 looking phage with bunch of 💍💍
February 18, 2026 at 3:26 AM
Reposted by Rauf Salamzade
New paper from my team detailing a greatly expanded genomic database of Asgard archaea revealing of high energy metabolism those related to eukaryotes! Led by @katyappler.bsky.social lots of help from @jameslingford.bsky.social @valdeanda.bsky.social @kassipan.bsky.social doi.org/10.1038/s415...
February 18, 2026 at 4:00 PM
Reposted by Rauf Salamzade
Insights into how #Staph aureus adapts to the bovine host by unlocking nutrients from the dairy niche. Great work by Amy Pickering, Jamie Gorzynski and others in the group. Bacterial metabolic remodeling by convergent evolution after a host switch.|Science Advances www.science.org/doi/10.1126/...
Bacterial metabolic remodeling by convergent evolution unlocks nutrient availability after a host switch
Staphylococcus aureus has undergone metabolic remodeling to adapt to the dairy niche.
www.science.org
February 18, 2026 at 9:40 AM
Reposted by Rauf Salamzade
Great work by Jamie Gorzynski and Josh-Harling-Lee from the group providing insights into the evolutionary origins of bacterial lineages. A collaboration with @jrpenades.bsky.social @wfigueroac3.bsky.social. #Staph Cell Reports www.cell.com/cell-reports...
Bacterial defense systems and host ecology drive the evolution of intra-species lineages
Staphylococcus aureus lineages vary widely in the frequency of gene exchange and the diversity of genome content. Gorzynski and Harling-Lee et al. show that both host ecology and the horizontal acquis...
www.cell.com
February 18, 2026 at 9:31 AM
Reposted by Rauf Salamzade
Super happy that the AllTheBacteria hypothetical proteins are now in AFDB - hopefully we can start to understand the function of some of them at least 😁
The AlphaFold Database, jointly developed with Google DeepMind, now contains datasets from specialist communities.

This includes rich datasets for microbes, viruses & parasites associated with tropical diseases.

Explore the new datasets in the AlphaFold Database.

www.ebi.ac.uk/about/news/u...
AlphaFold Database welcomes community datasets
Latest AlphaFold Database update adds high-value datasets for microbial and viral proteins, generated by specialist communities
www.ebi.ac.uk
February 18, 2026 at 4:46 AM
Reposted by Rauf Salamzade
The early microbiologists called these "sun-animalcules" for the shape, which became 'Heliozoa.'

The long thin projections are 'axopodia.' They're like sticky, retracting arms that pull food items in (Ochromonas algae in this case?)

I just think they're neat. 😀🦠🔆

(🔬: Brandon Seah, Wikimedia)
February 18, 2026 at 1:47 AM