Pranavathiyani G
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pranavathiyani.bsky.social
Pranavathiyani G
@pranavathiyani.bsky.social
290 followers 840 following 24 posts
Assistant Professor at SASTRA University | Multidisciplinary enthusiast 💬 | #Bioinformatics #SystemsBiology #DataScience #AMR #Coding #AI
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Reposted by Pranavathiyani G
pdbeurope.bsky.social
AlphaFold DB v6 (synced with UniProt 2025_03) is live! Here are the details:
Totals v4 → v6: 241,070,489 entries.
Since v4: +65,711,653 added, 39,324,993 removed, 276,539 changed (in sequence), 175,082,297 unchanged (metadata refresh, relabelled v6). Details 👇
October 21, 2025 at 1:00 PM
Reposted by Pranavathiyani G
posit.co
📣 HUGE ANNOUNCEMENT! Drum roll please 🥁🥁🥁🥁🥁🥁🥁

Introducing Positron, a free code editor built specifically for data science.

Learn more about what you can do with Positron: posit.co/blog/positro...
September 17, 2025 at 4:38 PM
Reposted by Pranavathiyani G
femsmicro.org
For #InternationalMicroorganismDay, we asked our FEMS MICRO 2025 Keynote Speakers and FEMS Journal Editors "'What is your favourite microbe?''

With delightful answers, ranging over many microbes and personal stories, this was the perfect way to celebrate IMD 2025! #MicroSky

youtu.be/oEJsWNJCtBw
Favourite Microbes for International Microorganism Day 2025
YouTube video by FEMS Microbiology
youtu.be
September 17, 2025 at 9:09 AM
Reposted by Pranavathiyani G
antimicrobial.bsky.social
Today on World Sepsis Day, neonatal sepsis remains a major killer, taking over 400,000 newborn lives each year, driven by weak immunity, delayed care, and #AMR. Strengthening hygiene, diagnostics, and timely treatment is crucial to closing the survival gap.

www.financialexpress.com/life/health/...
World Sepsis Day 2025: 400,000 babies die each year from this silent infection—Can it be stopped?
World Sepsis Day 2025: Sepsis is a silent infection that takes 400,000 newborn lives every year. Weak immunity, delayed treatment, and drug resistance make it harder to save babies.
www.financialexpress.com
September 13, 2025 at 6:54 AM
pranavathiyani.bsky.social
Ten simple rules for navigating #AI in #Science @plos.org
September 11, 2025 at 2:30 PM
Reposted by Pranavathiyani G
pdbeurope.bsky.social
🧪 We're beta testing – and we want your thoughts!

Try the new PDBe-KB Complex pages and let us know:
🔸 What’s working?
🔸 What’s confusing?
🔸 What features are lacking

💬 Feedback form: tinyurl.com/pdbekb-compl...

#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
September 11, 2025 at 2:22 PM
pranavathiyani.bsky.social
Virtual Lab #AI
www.czbiohub.org/news/with-no...
AI-built ‘scientists’ get the job done quickly
In Virtual Lab project, CZ Biohub San Francisco researchers and collaborators assemble team of interdisciplinary AI agents that can solve complex research questions
www.czbiohub.org
July 30, 2025 at 11:23 AM
Reposted by Pranavathiyani G
jsantoyo.bsky.social
PhyloScape: interactive and scalable visualization platform for phylogenetic trees. r#PhylogeneticTees #Visualization #Bioinformatics #BMCbioinformatics
bmcbioinformatics.biomedcentral.com/articles/10....
July 23, 2025 at 9:15 AM
Reposted by Pranavathiyani G
stephenturner.us
Genomic reproducibility in the bioinformatics era genomebiology.biomedcentral.com/articles/10.... 🧬🖥️
July 22, 2025 at 6:30 PM
Reposted by Pranavathiyani G
stephenturner.us
Exploring R and Rust in Bioinformatics - online developer forum blog.bioconductor.org/posts/2025-0... #Rstats #rustlang
July 11, 2025 at 3:30 PM
pranavathiyani.bsky.social
#AlphaGenome: #AI for better understanding the #genome
deepmind.google/discover/blo...
AlphaGenome: AI for better understanding the genome
Introducing a new, unifying DNA sequence model that advances regulatory variant-effect prediction and promises to shed new light on genome function — now available via API.
deepmind.google
June 25, 2025 at 2:47 PM
pranavathiyani.bsky.social
Tissue specific protein-protein associations

#atlas #ppi #disesse
A tissue-specific atlas of protein–protein associations enables prioritization of candidate disease genes - Nature Biotechnology
Protein–protein interactions specific to 11 individual tissues are presented in a comprehensive resource.
www.nature.com
May 10, 2025 at 6:26 AM
pranavathiyani.bsky.social
#Candida auris - emerging pathogen of #UTI
Candida auris is emerging as a prevalent urinary pathogen
Urinary tract infections (UTIs) are one of the most common infections, with a subgroup of these infections, catheter-associated UTIs (CAUTIs), accounting for 40% of nosocomial infections. While the ma...
journals.plos.org
May 9, 2025 at 6:11 PM
Reposted by Pranavathiyani G
msmicrobiocode.bsky.social
🧬 Out today 🧬 - our TyphiNET
#AMR surveillance dashboard for #typhoid

Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser.

genomemedicine.biomedcentral.com/articles/10....
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health - Genome Medicine
Background Salmonella enterica subspecies enterica serovar Typhi (abbreviated as ‘Typhi’) is the bacterial agent of typhoid fever. Effective antimicrobial therapy reduces complications and mortality; ...
genomemedicine.biomedcentral.com
May 9, 2025 at 1:16 PM
pranavathiyani.bsky.social
#Programming for research
Which programming language should I use? A guide for early-career researchers
Computer scientists and bioinformaticians address four key questions to help rookie coders to make the right choice.
www.nature.com
April 23, 2025 at 1:07 PM
pranavathiyani.bsky.social
Margaret Dayhoff! #Bioinformatics

www.nature.com/articles/s43...
Celebrating a pioneer in bioinformatics - Nature Computational Science
In honor of the 100th birthday of Margaret Dayhoff, we spotlight her footprint in the field of bioinformatics.
www.nature.com
March 11, 2025 at 1:48 PM
Reposted by Pranavathiyani G
dr-alphalyrae.bsky.social
Genome modeling and design across all domains of life with Evo 2 | bioRxiv www.biorxiv.org/content/10.1...
Genome modeling and design across all domains of life with Evo 2
All of life encodes information with DNA. While tools for sequencing, synthesis, and editing of genomic code have transformed biological research, intelligently composing new biological systems would ...
www.biorxiv.org
February 24, 2025 at 10:50 PM
Reposted by Pranavathiyani G
martinsteinegger.bsky.social
Foldseek 10 with 4-27x (1-8 GPUs) faster search through MMseqs2-GPU. Faster ProstT5 protein search w/o structure prediction through multi-GPU/Apple Metal, new BFVD/BFMD databases and multimer clustering (preview).
💾 github.com/steineggerla...
📄 www.biorxiv.org/content/10.1...
🐍 available in bioconda
January 20, 2025 at 2:56 PM
pranavathiyani.bsky.social
#KlebPhaCol
www.biorxiv.org/content/10.1...

#klebsiella #phage
KlebPhaCol: A community-driven resource for Klebsiella research identified a novel gut phage order associated with the human gut
The growing threat of multidrug-resistant Klebsiella pneumoniae, coupled with its role in gut colonisation, has intensified the search for new treatments, including bacteriophage therapy. Despite incr...
www.biorxiv.org
December 4, 2024 at 6:56 AM
pranavathiyani.bsky.social
Bacteria’s Stress Strategy: Slow Down to Avoid the Crowd www.the-scientist.com/bacteria-s-s...

#bacteria #stress #simulation
Bacteria’s Stress Strategy: Slow Down to Avoid the Crowd
Computer simulations highlight how bacteria slow their growth to avoid overcrowding, a behavior that may inform pathogen control.
www.the-scientist.com
December 3, 2024 at 4:32 AM
pranavathiyani.bsky.social
www.ipd.uw.edu/2024/11/intr...

#peptidedesign #diffusion
Introducing RFpeptides - Institute for Protein Design
Generative AI based on RFdiffusion designs cyclic peptides with atomic accuracy.
www.ipd.uw.edu
December 2, 2024 at 5:58 AM
pranavathiyani.bsky.social
www.nature.com/articles/d41...

#longevity #aging
What’s the secret to living to 100? Centenarian stem cells could offer clues
A bank of cells from people more than 100 years old gives scientists a new resource for studying longevity.
www.nature.com
November 30, 2024 at 4:00 AM
pranavathiyani.bsky.social
Language Models for Molecular Dynamics
www.biorxiv.org/content/10.1...

#languagemodel #moleculardynamics
Language Models for Molecular Dynamics
Molecular Dynamics (MD) simulations provide accurate descriptions of the motions of molecular systems, yet their computational demands pose significant challenges in applications in molecular biology ...
www.biorxiv.org
November 29, 2024 at 9:08 AM
Reposted by Pranavathiyani G
biorxiv-bioinfo.bsky.social
EasyPubPlot: a shiny web application for rapid omics data exploration and visualization https://www.biorxiv.org/content/10.1101/2024.11.26.625339v1
EasyPubPlot: a shiny web application for rapid omics data exploration and visualization https://www.biorxiv.org/content/10.1101/2024.11.26.625339v1
Computational toolkits for data exploration and visualization from widely used omics platforms often
www.biorxiv.org
November 29, 2024 at 5:47 AM
Reposted by Pranavathiyani G
gcorso.bsky.social
We’re excited to release a major update to the Boltz repo: v0.3.0. This release contains several important new features, including our confidence model and memory-efficient inference. Give it a try! github.com/jwohlwend/bo...
GitHub - jwohlwend/boltz: Official repository for the Boltz-1 biomolecular interaction model
Official repository for the Boltz-1 biomolecular interaction model - jwohlwend/boltz
github.com
November 28, 2024 at 4:50 PM