Eduardo Flores
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metalwolf1.bsky.social
Eduardo Flores
@metalwolf1.bsky.social
An irrational scientist trying to figure it out. Whatever "it" really is. All tweets are my own.
Reposted by Eduardo Flores
Announcing the joint @idpseminars.bsky.social / BPS IDP Subgroup Trainee Symposium Speakers! Join us on Mar 27, 12–2pm CST for 6 exciting talks focused on Intrinsically Disordered Proteins as part of #BophysicsWeek2025 with the @biophysicalsoc.bsky.social Sign up now using the QR code below!
March 17, 2025 at 3:37 PM
Reposted by Eduardo Flores
Announcing the joint @idpseminars.bsky.social / BPS IDP Subgroup Trainee Symposium Speakers!

Join us on Mar 27, 12–2pm CST for 6 exciting talks focused on Intrinsically Disordered Proteins as part of #BophysicsWeek2025 with the @biophysicalsoc.bsky.social Sign up now using the QR code below!
March 17, 2025 at 3:38 PM
Reposted by Eduardo Flores
Announcing the joint IDPSeminars / BPS IDP Subgroup Trainee Symposium Speakers!

Join us on Mar 27, 12–2pm CST for 6 exciting talks focused on Intrinsically Disordered Proteins as part of #BophysicsWeek2025 with the @biophysicalsoc.bsky.social

Sign up now at docs.google.com/forms/d/1L_K...
March 17, 2025 at 4:14 PM
Reposted by Eduardo Flores
#preprint Postdoc Nirbhik Acharya used NMR to find three transient helices within intrinsically-disordered regions of shuttle protein Dsk2 -- these interact with STI1. The STI1 is important for phase separation and proteasome condensates in yeast. Comments welcome!
www.biorxiv.org/content/10.1...
STI1 domain dynamically engages transient helices in disordered regions to drive self-association and phase separation of yeast ubiquilin Dsk2
Ubiquitin-binding shuttle proteins are important components of stress-induced biomolecular condensates in cells. Yeast Dsk2 scaffolds proteasome-containing condensates via multivalent interactions wit...
www.biorxiv.org
March 18, 2025 at 12:40 AM
Reposted by Eduardo Flores
Our review on machine learning methods to study sequence–ensemble–function relationships in disordered proteins is now out in COSB

authors.elsevier.com/sd/article/S...
Led by @sobuelow.bsky.social and Giulio Tesei
March 12, 2025 at 9:35 PM
Reposted by Eduardo Flores
Now published in JCIM! Thanks to reviewers and our editor for pushing us to (hopefully) clarify a few things and ensure it's clear what PENGUIN is trying to do (and what it's NOT trying to do).

Also, in case you were unsure, graphic design is our passion.

pubs.acs.org/doi/full/10....
March 5, 2025 at 2:50 PM
Reposted by Eduardo Flores
Happy new year! Our new preprint is live! We use single molecule imaging in live cells to show that activation domains can control how transcription factors bind to chromatin. SMT 1 TF Dogma 0 www.biorxiv.org/content/10.1...
Short activation domains control chromatin association of transcription factors
Transcription factors regulate gene expression with DNA-binding domains (DBDs) and activation domains. It is generally assumed that DBDs are solely responsible for interacting with DNA and chromatin. ...
www.biorxiv.org
January 10, 2025 at 5:07 PM
Reposted by Eduardo Flores
Online now! Correlating Disordered Activation Domain Ensembles with Gene Expression Levels. Eduardo Flores, Aleah R. Camacho, Estefania Cuevas-Zepeda, Mary B. McCoy, Feng Yu, Max V. Staller, and Shahar Sukenik. ow.ly/Ttgo50UAiLE
Correlating Disordered Activation Domain Ensembles with Gene Expression Levels
Transcription factor proteins bind to specific DNA promoter sequences and initiate gene transcription. These proteins often contain intrinsically disordered activation domains (ADs) that regulate their transcriptional activity. Like other disordered protein regions, ADs do not have a fixed three-dimensional structure and instead exist in an ensemble of conformations. Disordered ensembles contain sequence-encoded structural preferences which are often linked to their function. We hypothesize this link exists between the structural preferences of AD ensembles and their ability to induce gene expression.
ow.ly
January 6, 2025 at 6:19 PM
📢 Excited to share our research with @shaharsu.bsky.social & @mvstaller.bsky.social on how activation domain (AD) structure affects gene expression! 🧬 TLDR: HIF-1α & CITED2 ADs suggest ensemble dimensions may regulate transcription in unique ways.
www.cell.com/biophysrepor...
🧵 Highlights:
February 26, 2025 at 7:03 AM