Marie Held
@makaefer.bsky.social
Image analyst at the Centre for Cell Imaging, the University of Liverpool.
didyouknowimageanalysis.wordpress.com
CCI.liv.ac.uk
didyouknowimageanalysis.wordpress.com
CCI.liv.ac.uk
Reposted by Marie Held
Please see below. York is one of these sites, enabling everything from the basics to some of the most advanced microscopy applications
🔬UK researchers: Access cutting-edge bioimaging tech + expert support with our User Access Fund!
💷 £5k for imaging
💷 £2k for image analysis
Choose from 6 top UK facilities, contact them, then apply!
rms.org.uk/user-access-fund
⏰ Next deadline: 31 March
✅ Decision in 4 weeks
Pls share!
💷 £5k for imaging
💷 £2k for image analysis
Choose from 6 top UK facilities, contact them, then apply!
rms.org.uk/user-access-fund
⏰ Next deadline: 31 March
✅ Decision in 4 weeks
Pls share!
February 2, 2026 at 9:12 PM
Please see below. York is one of these sites, enabling everything from the basics to some of the most advanced microscopy applications
Sometimes there’s only one thing that hits the spot: homemade cheesy garlic bread.
January 31, 2026 at 6:17 PM
Sometimes there’s only one thing that hits the spot: homemade cheesy garlic bread.
Reposted by Marie Held
We are hosting an #Ilastik workshop on March 27th, led by Dominik Kutra, senior research software engineer @ilastik-team.bsky.social
The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)
The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)
January 27, 2026 at 3:37 PM
We are hosting an #Ilastik workshop on March 27th, led by Dominik Kutra, senior research software engineer @ilastik-team.bsky.social
The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)
The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)
Reposted by Marie Held
We Are hiring!! 👨💻👩💻 CALM's new Data and Systems Steward Role is live 🎉https://crick.wd3.myworkdayjobs.com/External/job/London/Data-and-Systems-Steward_R2551 closing date 8th Feb!
Data and Systems Steward
Salary for this Role: From £43,630 with benefits, subject to skills and experience. Job Title: Data and Systems Steward Reports to: Kurt Anderson Closing Date: 08/Feb/2026 23.59 GMT Job Description: D...
crick.wd3.myworkdayjobs.com
January 19, 2026 at 1:17 PM
We Are hiring!! 👨💻👩💻 CALM's new Data and Systems Steward Role is live 🎉https://crick.wd3.myworkdayjobs.com/External/job/London/Data-and-Systems-Steward_R2551 closing date 8th Feb!
Reposted by Marie Held
<25% of #data professionals are women - not great!
If you are a woman interested in retraining in #bio #DataScience, our #IWD #Scholarship may be for you. This award gives you access to all our courses, peer-to-peer support & mentorship. Deadline: 20/02.
www.liverpool.ac.uk/computationa...
If you are a woman interested in retraining in #bio #DataScience, our #IWD #Scholarship may be for you. This award gives you access to all our courses, peer-to-peer support & mentorship. Deadline: 20/02.
www.liverpool.ac.uk/computationa...
IWD Scholarship | Computational Biology Facility | University of Liverpool
www.liverpool.ac.uk
January 28, 2026 at 10:13 AM
<25% of #data professionals are women - not great!
If you are a woman interested in retraining in #bio #DataScience, our #IWD #Scholarship may be for you. This award gives you access to all our courses, peer-to-peer support & mentorship. Deadline: 20/02.
www.liverpool.ac.uk/computationa...
If you are a woman interested in retraining in #bio #DataScience, our #IWD #Scholarship may be for you. This award gives you access to all our courses, peer-to-peer support & mentorship. Deadline: 20/02.
www.liverpool.ac.uk/computationa...
Reposted by Marie Held
‼️Attention - we are #hiring‼️
We're looking for a new Computational Biology Data Scientist al (post PhD or equivalent). Join our team :) we have a wonderful environment and work with very exciting #science. Deadline 10/02
tinyurl.com/699c6b95
#jobs
We're looking for a new Computational Biology Data Scientist al (post PhD or equivalent). Join our team :) we have a wonderful environment and work with very exciting #science. Deadline 10/02
tinyurl.com/699c6b95
#jobs
Job Specification
tinyurl.com
January 28, 2026 at 10:23 AM
‼️Attention - we are #hiring‼️
We're looking for a new Computational Biology Data Scientist al (post PhD or equivalent). Join our team :) we have a wonderful environment and work with very exciting #science. Deadline 10/02
tinyurl.com/699c6b95
#jobs
We're looking for a new Computational Biology Data Scientist al (post PhD or equivalent). Join our team :) we have a wonderful environment and work with very exciting #science. Deadline 10/02
tinyurl.com/699c6b95
#jobs
Working with chorioallantoic membrane (CAM) models? Check out CAMCON26, an unmissable event in the city to be, Liverpool! www.liverpool.ac.uk/research/fac...
CAMCON26 | Research | University of Liverpool
www.liverpool.ac.uk
January 26, 2026 at 12:31 PM
Working with chorioallantoic membrane (CAM) models? Check out CAMCON26, an unmissable event in the city to be, Liverpool! www.liverpool.ac.uk/research/fac...
Reposted by Marie Held
Our #CellLineOfTheWeek is dystrophin - illuminating a protein often involved in muscle movement! 💪
Our cell lines & plasmids are available for just the cost of shipping to lower the barriers to scientific discovery.
📦 Distributed by @coriellinstitute.bsky.social and @addgene.bsky.social
Our cell lines & plasmids are available for just the cost of shipping to lower the barriers to scientific discovery.
📦 Distributed by @coriellinstitute.bsky.social and @addgene.bsky.social
January 9, 2026 at 6:10 PM
Our #CellLineOfTheWeek is dystrophin - illuminating a protein often involved in muscle movement! 💪
Our cell lines & plasmids are available for just the cost of shipping to lower the barriers to scientific discovery.
📦 Distributed by @coriellinstitute.bsky.social and @addgene.bsky.social
Our cell lines & plasmids are available for just the cost of shipping to lower the barriers to scientific discovery.
📦 Distributed by @coriellinstitute.bsky.social and @addgene.bsky.social
It's that time of year: shiny.research.sfu.ca/u/rdmorin/sc...
What a delightful mess 🤓😅🤭🍵💻🔬🔬🔬🔬
What a delightful mess 🤓😅🤭🍵💻🔬🔬🔬🔬
January 8, 2026 at 4:40 PM
It's that time of year: shiny.research.sfu.ca/u/rdmorin/sc...
What a delightful mess 🤓😅🤭🍵💻🔬🔬🔬🔬
What a delightful mess 🤓😅🤭🍵💻🔬🔬🔬🔬
Workstation Henrietta in @cci-liv.bsky.social working hard doing my bidding.
January 7, 2026 at 4:43 PM
Workstation Henrietta in @cci-liv.bsky.social working hard doing my bidding.
Reposted by Marie Held
✨New Year's resolutions involve learning something new?✨
Then apply for our “Introduction to Image Analysis” workshop in Cardiff in May 2026! Deadline for applications is January 16th.
🔗⬇️
www.rms.org.uk/rms-event-ca...
@royalmicrosoc.bsky.social @david-j-barry.bsky.social @martinjones.bsky.social
Then apply for our “Introduction to Image Analysis” workshop in Cardiff in May 2026! Deadline for applications is January 16th.
🔗⬇️
www.rms.org.uk/rms-event-ca...
@royalmicrosoc.bsky.social @david-j-barry.bsky.social @martinjones.bsky.social
Introduction to Image Analysis 2026
www.rms.org.uk
January 2, 2026 at 2:17 PM
✨New Year's resolutions involve learning something new?✨
Then apply for our “Introduction to Image Analysis” workshop in Cardiff in May 2026! Deadline for applications is January 16th.
🔗⬇️
www.rms.org.uk/rms-event-ca...
@royalmicrosoc.bsky.social @david-j-barry.bsky.social @martinjones.bsky.social
Then apply for our “Introduction to Image Analysis” workshop in Cardiff in May 2026! Deadline for applications is January 16th.
🔗⬇️
www.rms.org.uk/rms-event-ca...
@royalmicrosoc.bsky.social @david-j-barry.bsky.social @martinjones.bsky.social
Reposted by Marie Held
⬇️⬇️⬇️ This is a great opportunity to learn from the best about how to apply AL/ML to microscopy images. Applications open!
🚨 Alarm!!! 🚨
AI/ML course for microscopy image analysis!!! 🧐
In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!?
20 students, ~14 TAs and lecturers
🗓️ June 4-18 2026
✍️ Jan 15 2026 ✍️
🔁 pls!!
www.janelia.org/you-janelia/...
AI/ML course for microscopy image analysis!!! 🧐
In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!?
20 students, ~14 TAs and lecturers
🗓️ June 4-18 2026
✍️ Jan 15 2026 ✍️
🔁 pls!!
www.janelia.org/you-janelia/...
Deep Learning for Microscopy Image Analysis
Topics The following will be covered extensively during lectures, exercises, and project work: Image denoising and restoration (fully supervised and self-supervised) Image translation (e.g.,
www.janelia.org
December 29, 2025 at 10:11 AM
⬇️⬇️⬇️ This is a great opportunity to learn from the best about how to apply AL/ML to microscopy images. Applications open!
Reposted by Marie Held
We're a bit late in ringing in the giving season, but it is indeed upon us. Enjoy our special edition holiday logo ☃️ and, if you can spare a bit and appreciate napari, please donate to our development efforts! 🙏 CZI will match donations up to $75K.
opencollective.com/napari/donate
opencollective.com/napari/donate
December 18, 2025 at 12:03 PM
We're a bit late in ringing in the giving season, but it is indeed upon us. Enjoy our special edition holiday logo ☃️ and, if you can spare a bit and appreciate napari, please donate to our development efforts! 🙏 CZI will match donations up to $75K.
opencollective.com/napari/donate
opencollective.com/napari/donate
Come on, do it. You know you want to. ⬇️
🔬 Hands-on bioimage data stewardship workshop
27/2/2026
Uni of Liverpool
Learn the complete data lifecycle from acquisition to repository submission.
Train-the-trainer format - take materials back to your facility!
✓ 25 places
✓ Up to £100 travel
✓ Apply by 7 Jan
Apply👇
3 more in Scotland, SW, SE
27/2/2026
Uni of Liverpool
Learn the complete data lifecycle from acquisition to repository submission.
Train-the-trainer format - take materials back to your facility!
✓ 25 places
✓ Up to £100 travel
✓ Apply by 7 Jan
Apply👇
3 more in Scotland, SW, SE
December 5, 2025 at 6:35 PM
Come on, do it. You know you want to. ⬇️
Reposted by Marie Held
If you or your trainees are just getting started with image analysis of cells & are #CellProfiler -curious, here is a fairly thorough walk-through demo I did recently. Loading files, extracting metadata (fun with Regex!), identifying objects, measuring, filtering, QC, exporting:
youtu.be/fO5nJdhj_7I
youtu.be/fO5nJdhj_7I
Introduction to CellProfiler - by a biologist, for biologists!
YouTube video by CellMorphoJSero
youtu.be
December 4, 2025 at 12:37 PM
If you or your trainees are just getting started with image analysis of cells & are #CellProfiler -curious, here is a fairly thorough walk-through demo I did recently. Loading files, extracting metadata (fun with Regex!), identifying objects, measuring, filtering, QC, exporting:
youtu.be/fO5nJdhj_7I
youtu.be/fO5nJdhj_7I
Reposted by Marie Held
Do you have 2D-to-3D image registration challenges? Let me know about them here
forum.image.sc/t/toward-bet...
forum.image.sc/t/toward-bet...
Toward better 2D - 3D registration in BigWarp
BigWarp has so far focused on 2D-2D or 3D-3D registration, and not on 2D-3D registration. After a conversation with @Christian_Tischer , we thought some simple UI changes could make the support for 2...
forum.image.sc
November 29, 2025 at 6:03 PM
Do you have 2D-to-3D image registration challenges? Let me know about them here
forum.image.sc/t/toward-bet...
forum.image.sc/t/toward-bet...
Reposted by Marie Held
No CBIAS would be complete without an image analysis workshop! Thanks Rocco, @giuliapaci.bsky.social and @makaefer.bsky.social for organising, we had fun helping out with teaching 🔬💻
And that’s a wrap for the @cbias.bsky.social napari workshop as well. Two days of learning, working collaboratively and finished off with a presentation from each of five project groups detailing the progress they made. Organised by Rocco D’Antuono, @giuliapaci.bsky.social and yours truly
November 28, 2025 at 7:45 AM
No CBIAS would be complete without an image analysis workshop! Thanks Rocco, @giuliapaci.bsky.social and @makaefer.bsky.social for organising, we had fun helping out with teaching 🔬💻
And that’s a wrap for the @cbias.bsky.social napari workshop as well. Two days of learning, working collaboratively and finished off with a presentation from each of five project groups detailing the progress they made. Organised by Rocco D’Antuono, @giuliapaci.bsky.social and yours truly
November 27, 2025 at 7:24 PM
And that’s a wrap for the @cbias.bsky.social napari workshop as well. Two days of learning, working collaboratively and finished off with a presentation from each of five project groups detailing the progress they made. Organised by Rocco D’Antuono, @giuliapaci.bsky.social and yours truly
Reposted by Marie Held
November 25, 2025 at 1:06 PM
Reposted by Marie Held
An immense thank you again to @cbias.bsky.social committee, sponsors and fellow imaging friends for this fantastic symposium!
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
November 25, 2025 at 6:26 PM
An immense thank you again to @cbias.bsky.social committee, sponsors and fellow imaging friends for this fantastic symposium!
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
Reposted by Marie Held
Topical conclusion from @helenajambor.bsky.social
Scientists have tools to fight and make life better
#CBiAS2025
Scientists have tools to fight and make life better
#CBiAS2025
November 25, 2025 at 11:45 AM
Topical conclusion from @helenajambor.bsky.social
Scientists have tools to fight and make life better
#CBiAS2025
Scientists have tools to fight and make life better
#CBiAS2025
And we’re off. #CBIAS2025 6th Edition, first outside of the Crick but impressed by the localities at @wellcomecollection.bsky.social
@david-j-barry.bsky.social welcoming the community
@david-j-barry.bsky.social welcoming the community
November 24, 2025 at 10:23 AM
And we’re off. #CBIAS2025 6th Edition, first outside of the Crick but impressed by the localities at @wellcomecollection.bsky.social
@david-j-barry.bsky.social welcoming the community
@david-j-barry.bsky.social welcoming the community
It’s that time of year that I make my pilgrimage to London for the #CBIAS2025 and its trilogy of Ps: presentations, posters and panel discussions. But first I did some exploring…
🎶 London calling to the faraway towns 🎶
🎶 London calling to the faraway towns 🎶
November 24, 2025 at 6:55 AM
It’s that time of year that I make my pilgrimage to London for the #CBIAS2025 and its trilogy of Ps: presentations, posters and panel discussions. But first I did some exploring…
🎶 London calling to the faraway towns 🎶
🎶 London calling to the faraway towns 🎶
Reposted by Marie Held
Less than a week to go for #CBIAS2025! A few hours left to register, in person in London or online over Zoom (registration deadline on Nov 20th)
Find out all the information at the link below:
www.crick.ac.uk/whats-on/cri...
Find out all the information at the link below:
www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
November 18, 2025 at 4:40 PM
Less than a week to go for #CBIAS2025! A few hours left to register, in person in London or online over Zoom (registration deadline on Nov 20th)
Find out all the information at the link below:
www.crick.ac.uk/whats-on/cri...
Find out all the information at the link below:
www.crick.ac.uk/whats-on/cri...
Reposted by Marie Held
Time is running out to register for #CBIAS2025
November 13, 2025 at 9:12 PM
Time is running out to register for #CBIAS2025