Marie Held
@makaefer.bsky.social
Image analyst at the Centre for Cell Imaging, the University of Liverpool.
didyouknowimageanalysis.wordpress.com
CCI.liv.ac.uk
didyouknowimageanalysis.wordpress.com
CCI.liv.ac.uk
Reposted by Marie Held
Time is running out to register for #CBIAS2025
November 13, 2025 at 9:12 PM
Time is running out to register for #CBIAS2025
Don’t miss out on this inclusive, friendly, stimulating, fun event!
Last chance to register for #CBIAS2025, registrations are closing on November 20th - join us to discuss all things #bioimageanalysis and don’t miss a great networking opportunity!
Will you be there?
www.crick.ac.uk/whats-on/cri...
Will you be there?
www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
November 13, 2025 at 4:06 PM
Don’t miss out on this inclusive, friendly, stimulating, fun event!
What a pertinent read today: www.science.org/content/arti...
Let us not forget, champion the “invisible women“, fight for what’s right.
What a coincidence that I had the privilege to name new @cci-liv.bsky.social workstations today: Henrietta Lacks, Bibha Chowdhuri and Katherine Johnson 👩🔬🔬⚛️🔭👩🔬
Let us not forget, champion the “invisible women“, fight for what’s right.
What a coincidence that I had the privilege to name new @cci-liv.bsky.social workstations today: Henrietta Lacks, Bibha Chowdhuri and Katherine Johnson 👩🔬🔬⚛️🔭👩🔬
Rosalind Franklin and the damage of gender harassment
Spurred by a recent report on sexual harassment in academia, our columnist revisits a historical case and reflects on what has changed—and what hasn’t
www.science.org
November 7, 2025 at 10:27 PM
What a pertinent read today: www.science.org/content/arti...
Let us not forget, champion the “invisible women“, fight for what’s right.
What a coincidence that I had the privilege to name new @cci-liv.bsky.social workstations today: Henrietta Lacks, Bibha Chowdhuri and Katherine Johnson 👩🔬🔬⚛️🔭👩🔬
Let us not forget, champion the “invisible women“, fight for what’s right.
What a coincidence that I had the privilege to name new @cci-liv.bsky.social workstations today: Henrietta Lacks, Bibha Chowdhuri and Katherine Johnson 👩🔬🔬⚛️🔭👩🔬
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
CBIAS napari workshop 2025
www.crick.ac.uk
November 7, 2025 at 10:49 AM
📢 Enhance your bioimage analysis skills - 2-day hands-on napari workshop.
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Learn to:
- Set up conda envis install napari
- Navigate napari GUI install plugins
- Jupyter notebooks for basic IA
- Apply new skills to real datasets w expert guidance
📅 Apply by NOW!
www.crick.ac.uk/whats-on/cbi...
Reposted by Marie Held
Want to enhance your image analysis skills with napari?
We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data.
🕒 Applications close on 15 September.
Learn more and apply 👇
www.crick.ac.uk/whats-on/cbi...
We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data.
🕒 Applications close on 15 September.
Learn more and apply 👇
www.crick.ac.uk/whats-on/cbi...
CBIAS napari workshop 2025
www.crick.ac.uk
September 12, 2025 at 10:08 AM
Want to enhance your image analysis skills with napari?
We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data.
🕒 Applications close on 15 September.
Learn more and apply 👇
www.crick.ac.uk/whats-on/cbi...
We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data.
🕒 Applications close on 15 September.
Learn more and apply 👇
www.crick.ac.uk/whats-on/cbi...
Last chance saloon 🤠 to register for the hands-on 2-day napari training. Application deadline has been extended.
www.crick.ac.uk/whats-on/cbi...
www.crick.ac.uk/whats-on/cbi...
September 12, 2025 at 9:53 AM
Last chance saloon 🤠 to register for the hands-on 2-day napari training. Application deadline has been extended.
www.crick.ac.uk/whats-on/cbi...
www.crick.ac.uk/whats-on/cbi...
Reposted by Marie Held
Super happy to see CLEM-Reg out in @natmethods.nature.com! A short thread on the algorithm behind it and how to try it out for yourself🧵(1/9)
www.nature.com/articles/s41...
www.nature.com/articles/s41...
CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy - Nature Methods
CLEM-Reg automates the three-dimensional alignment of volume correlative light and electron microscopy datasets by leveraging probabilistic point cloud registration techniques for fast and accurate re...
www.nature.com
September 10, 2025 at 9:37 AM
Super happy to see CLEM-Reg out in @natmethods.nature.com! A short thread on the algorithm behind it and how to try it out for yourself🧵(1/9)
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Marie Held
CLEM-Reg automates the 3D alignment of volume correlative light and electron microscopy data.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
September 11, 2025 at 2:25 PM
CLEM-Reg automates the 3D alignment of volume correlative light and electron microscopy data.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Great news. Inclusive CBIAS all the way.
The abstract submission deadline for #CBIAS2025 has just closed and, for the first time, we have a near perfect gender-balance in our abstract submissions.
In fact, we have slightly more submissions from women than men.
In fact, we have slightly more submissions from women than men.
a man with his arms crossed is smiling and saying noice !
ALT: a man with his arms crossed is smiling and saying noice !
media.tenor.com
September 1, 2025 at 10:56 AM
Great news. Inclusive CBIAS all the way.
Reposted by Marie Held
Next guest speaker at #CBIAS2025 is Christa Walther, community manager for @globias.bsky.social. GloBIAS is a worldwide association that brings together all those interested in #bioimageanalysis, offering opportunities for knowledge exchange, events, training, and resources.
🔗👇
www.globias.org
🔗👇
www.globias.org
Home
News
Next BIA seminar series: "Behind the Scenes at SciLifeLab BIIF: Lessons from Managing a National Bioimage Analysis Support Unit" by Anna Klemm on 27th of August, 2pm CEST
GloBIAS held its inaugu...
www.globias.org
August 25, 2025 at 3:21 PM
Next guest speaker at #CBIAS2025 is Christa Walther, community manager for @globias.bsky.social. GloBIAS is a worldwide association that brings together all those interested in #bioimageanalysis, offering opportunities for knowledge exchange, events, training, and resources.
🔗👇
www.globias.org
🔗👇
www.globias.org
Reposted by Marie Held
We continue the #CBIAS2025 speaker intros with @jytinevez.bsky.social, research engineer and core facility manager at the Institut Pasteur. Jean-Yves is one of the minds behind TrackMate and is part of F-BIAS, a federation of bioimage analysts across France
🔗👇
research.pasteur.fr/fr/member/je...
🔗👇
research.pasteur.fr/fr/member/je...
August 26, 2025 at 10:26 AM
We continue the #CBIAS2025 speaker intros with @jytinevez.bsky.social, research engineer and core facility manager at the Institut Pasteur. Jean-Yves is one of the minds behind TrackMate and is part of F-BIAS, a federation of bioimage analysts across France
🔗👇
research.pasteur.fr/fr/member/je...
🔗👇
research.pasteur.fr/fr/member/je...
Reposted by Marie Held
Last but not least for our #CBIAS2025 guest speaker line-up is Ilaria Testa, fellow at @scilifelab.se. Ilaria and team develop and apply novel super resolution microscopy approaches to understand fundamental biological processes relevant for health and disease
🔗👇
www.scilifelab.se/researchers/...
🔗👇
www.scilifelab.se/researchers/...
August 27, 2025 at 8:39 AM
Last but not least for our #CBIAS2025 guest speaker line-up is Ilaria Testa, fellow at @scilifelab.se. Ilaria and team develop and apply novel super resolution microscopy approaches to understand fundamental biological processes relevant for health and disease
🔗👇
www.scilifelab.se/researchers/...
🔗👇
www.scilifelab.se/researchers/...
Reposted by Marie Held
Applications close at the end of the week!
Ready to automate your #microscopy #imageanalysis tasks? Applications are now open for our next "Introduction to Image Analysis" training course, in London at the @crick.ac.uk on October 27th-28th, 2025! 🔬💻
More info ⬇️
www.crick.ac.uk/whats-on/int...
More info ⬇️
www.crick.ac.uk/whats-on/int...
Introduction to image analysis
www.crick.ac.uk
August 27, 2025 at 2:49 PM
Applications close at the end of the week!
Reposted by Marie Held
The #CBIAS2025 abstract deadline is this Sunday, August 31st. Submit your #BioImageAnalysis work, whether it’s a new tool or a biological discovery. #EarlyCareerResearchers, this is for you! Short and flash talk slots are up for grabs.
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
August 26, 2025 at 11:12 AM
The #CBIAS2025 abstract deadline is this Sunday, August 31st. Submit your #BioImageAnalysis work, whether it’s a new tool or a biological discovery. #EarlyCareerResearchers, this is for you! Short and flash talk slots are up for grabs.
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
Reposted by Marie Held
At #CBIAS2025 we will also hear from Ewa Paluch from @cam.ac.uk. Ewa and their team take an interdisciplinary approach combining biology, imaging, mechanical testing and physical modelling to investigate the basic principles underlying animal cell morphogenesis
🔗👇
www.pdn.cam.ac.uk/directory/ew...
🔗👇
www.pdn.cam.ac.uk/directory/ew...
Professor Ewa K Paluch | Department of Physiology, Development and Neuroscience
www.pdn.cam.ac.uk
August 24, 2025 at 9:19 AM
At #CBIAS2025 we will also hear from Ewa Paluch from @cam.ac.uk. Ewa and their team take an interdisciplinary approach combining biology, imaging, mechanical testing and physical modelling to investigate the basic principles underlying animal cell morphogenesis
🔗👇
www.pdn.cam.ac.uk/directory/ew...
🔗👇
www.pdn.cam.ac.uk/directory/ew...
Reposted by Marie Held
We continue the #CBIAS2025 speaker line-up with Dominik Kutra, senior research software engineer in the @ilastik-team.bsky.social. Dominik is one of the core developers of Ilastik, a user-friendly software that leverages machine learning algorithms to easily analyse bioimages
🔗👇
www.ilastik.org
🔗👇
www.ilastik.org
ilastik - ilastik
www.ilastik.org
August 23, 2025 at 9:38 AM
We continue the #CBIAS2025 speaker line-up with Dominik Kutra, senior research software engineer in the @ilastik-team.bsky.social. Dominik is one of the core developers of Ilastik, a user-friendly software that leverages machine learning algorithms to easily analyse bioimages
🔗👇
www.ilastik.org
🔗👇
www.ilastik.org
Reposted by Marie Held
Hello! Very excited to share our latest preprint, which is great news for us but terrible news for any diehard fans of PSNR and SSIM as image quality metrics in microscopy... (1/5)
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Image quality metrics fail to accurately represent biological information in fluorescence microscopy
Image processing methods offer the potential to improve the quality of fluorescence microscopy data, allowing for image acquisition at lower, less phototoxic illumination doses. The training and evalu...
www.biorxiv.org
August 7, 2025 at 1:00 PM
Hello! Very excited to share our latest preprint, which is great news for us but terrible news for any diehard fans of PSNR and SSIM as image quality metrics in microscopy... (1/5)
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Marie Held
Next up at #CBIAS2025 is @helenajambor.bsky.social from the University of Applied Sciences of the Grisons. Helena researches data visualisation in the life sciences, combining their expertise with large datasets and their interest in data communication
🔗👇
helenajamborwrites.netlify.app/about
🔗👇
helenajamborwrites.netlify.app/about
HelenaJamborWrites - About
helenajamborwrites.netlify.app
August 22, 2025 at 6:57 PM
Next up at #CBIAS2025 is @helenajambor.bsky.social from the University of Applied Sciences of the Grisons. Helena researches data visualisation in the life sciences, combining their expertise with large datasets and their interest in data communication
🔗👇
helenajamborwrites.netlify.app/about
🔗👇
helenajamborwrites.netlify.app/about
Reposted by Marie Held
Our first #CBIAS2025 invited speaker is Andrew French from @uniofnottingham.bsky.social, who specialises in using AI to understand images. Their research interests include image analysis of plants and complex structures and image capture automation
🔗👇
www.nottingham.ac.uk/biosciences/...
🔗👇
www.nottingham.ac.uk/biosciences/...
People - The University of Nottingham
www.nottingham.ac.uk
August 21, 2025 at 10:17 AM
Our first #CBIAS2025 invited speaker is Andrew French from @uniofnottingham.bsky.social, who specialises in using AI to understand images. Their research interests include image analysis of plants and complex structures and image capture automation
🔗👇
www.nottingham.ac.uk/biosciences/...
🔗👇
www.nottingham.ac.uk/biosciences/...
Reposted by Marie Held
The line-up for guest speakers at #CBIAS2025 is looking great! 🎉
We'll introduce them to you in the coming days, on the lead up to the deadline for abstract submission on August 31st.
If you want a sneak peek in the meantime, check our website!
www.crick.ac.uk/whats-on/cri...
We'll introduce them to you in the coming days, on the lead up to the deadline for abstract submission on August 31st.
If you want a sneak peek in the meantime, check our website!
www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
August 20, 2025 at 12:20 PM
The line-up for guest speakers at #CBIAS2025 is looking great! 🎉
We'll introduce them to you in the coming days, on the lead up to the deadline for abstract submission on August 31st.
If you want a sneak peek in the meantime, check our website!
www.crick.ac.uk/whats-on/cri...
We'll introduce them to you in the coming days, on the lead up to the deadline for abstract submission on August 31st.
If you want a sneak peek in the meantime, check our website!
www.crick.ac.uk/whats-on/cri...
🚨🚨🚨🚨 Don’t leave it too late to submit an abstract to #CBIAS2025 Tell us what you’re up to. 🚨🚨🚨🚨
ONLY 11 MORE DAYS TO SUBMIT AN ABSTRACT FOR #CBIAS2025!!!
August 20, 2025 at 1:31 PM
🚨🚨🚨🚨 Don’t leave it too late to submit an abstract to #CBIAS2025 Tell us what you’re up to. 🚨🚨🚨🚨
Reposted by Marie Held
Abstract submission #CBIAS2025 is closing on August 31st - we invite submissions on all topics related to #bioimageanalysis: new tools, biological discoveries using existing methods, and anything in between. Early-career researchers especially encouraged to submit!
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
August 8, 2025 at 7:02 PM
Abstract submission #CBIAS2025 is closing on August 31st - we invite submissions on all topics related to #bioimageanalysis: new tools, biological discoveries using existing methods, and anything in between. Early-career researchers especially encouraged to submit!
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
Reposted by Marie Held
I am stunned!
First edition of the "Bio-Imaging with Shakespeare" LinkedIn Newsletter (buff.ly/8x7Shiq) is out for 15h and already 130 subscribers.
If you are interested in the topic FOLLOW ME on LinkedIn and Bsky and SUBSCRIBE
on LinkedIn buff.ly/cLPh8eZ
#bioimageanalysis #biovoxxel #fiji
First edition of the "Bio-Imaging with Shakespeare" LinkedIn Newsletter (buff.ly/8x7Shiq) is out for 15h and already 130 subscribers.
If you are interested in the topic FOLLOW ME on LinkedIn and Bsky and SUBSCRIBE
on LinkedIn buff.ly/cLPh8eZ
#bioimageanalysis #biovoxxel #fiji
August 13, 2025 at 11:59 PM
I am stunned!
First edition of the "Bio-Imaging with Shakespeare" LinkedIn Newsletter (buff.ly/8x7Shiq) is out for 15h and already 130 subscribers.
If you are interested in the topic FOLLOW ME on LinkedIn and Bsky and SUBSCRIBE
on LinkedIn buff.ly/cLPh8eZ
#bioimageanalysis #biovoxxel #fiji
First edition of the "Bio-Imaging with Shakespeare" LinkedIn Newsletter (buff.ly/8x7Shiq) is out for 15h and already 130 subscribers.
If you are interested in the topic FOLLOW ME on LinkedIn and Bsky and SUBSCRIBE
on LinkedIn buff.ly/cLPh8eZ
#bioimageanalysis #biovoxxel #fiji
Reposted by Marie Held
𝐑𝐞𝐚𝐝 𝐭𝐡𝐞 𝐟𝐮𝐥𝐥 𝐚𝐫𝐭𝐢𝐜𝐥𝐞 𝐡𝐞𝐫𝐞:
www.rms.org.uk/community/ne...
www.rms.org.uk/community/ne...
The UK Node of Euro-BioImaging
www.rms.org.uk
May 30, 2025 at 1:43 PM
𝐑𝐞𝐚𝐝 𝐭𝐡𝐞 𝐟𝐮𝐥𝐥 𝐚𝐫𝐭𝐢𝐜𝐥𝐞 𝐡𝐞𝐫𝐞:
www.rms.org.uk/community/ne...
www.rms.org.uk/community/ne...
Reposted by Marie Held
📢 After #CBIAS2025, join our hands-on 2-day napari training by @crick.ac.uk @ucl.ac.uk @liverpooluni.bsky.social
From conda to plugins to Jupyter, practicals on real data with expert guidance.
For Python/ImageJ coders. Apply by 1 Sept – limited to 30! crick.ac.uk/whats-on/cbias-napari-workshop-2025
From conda to plugins to Jupyter, practicals on real data with expert guidance.
For Python/ImageJ coders. Apply by 1 Sept – limited to 30! crick.ac.uk/whats-on/cbias-napari-workshop-2025
CBIAS napari workshop 2025
crick.ac.uk
August 11, 2025 at 2:26 PM
📢 After #CBIAS2025, join our hands-on 2-day napari training by @crick.ac.uk @ucl.ac.uk @liverpooluni.bsky.social
From conda to plugins to Jupyter, practicals on real data with expert guidance.
For Python/ImageJ coders. Apply by 1 Sept – limited to 30! crick.ac.uk/whats-on/cbias-napari-workshop-2025
From conda to plugins to Jupyter, practicals on real data with expert guidance.
For Python/ImageJ coders. Apply by 1 Sept – limited to 30! crick.ac.uk/whats-on/cbias-napari-workshop-2025