Julian Kompa
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juliankompa.bsky.social
Julian Kompa
@juliankompa.bsky.social
PhD student in the group of Kai Johnsson, Chemical Biology department of Max Planck Institute for Medical Research Heidelberg | Interested in labeling strategies for super-resolution microscopy
Reposted by Julian Kompa
🎉🌟Big news! Our Director @kjohnsson.bsky.social has received an @erc.europa.eu Synergy Grant, together with teams from EPFL @sulianamanley.bsky.social and @unibe.ch! 👏They’ll explore how mitochondria communicate with other cell parts🔬 #ERCSyG #maxplanck #mpimr #science
www.mr.mpg.de/14662972/erc...
ERC Synergy Grant for MPI Director Kai Johnsson
www.mr.mpg.de
November 6, 2025 at 11:41 AM
Reposted by Julian Kompa
🚨Curious how synthetic fluorophores simplify microscopy? Our review covers applications such as super-resolution microscopy and biosensing. 🎉👩‍🔬Congrats to my first PhD student, Agnese Nicoli, for the fearless deep dive! 🔬 ⚗️
D-CHAB @ethz.ch
www.nature.com/articles/s41...
Synthetic fluorophores for live-cell fluorescence microscopy and biosensing - Nature Chemical Biology
Performing live-cell microscopy experiments with high spatial and temporal resolution requires fluorophores with highly optimized properties. This Review examines the progress in developing synthetic ...
www.nature.com
November 5, 2025 at 9:29 PM
Reposted by Julian Kompa
Chemically Induced Dimerisation, modular & on-demand:

=> Fast, stepwise reagents for HaloTag-to-SNAP-tag heterodimerisation without a hook effect

Now preprinted: doi.org/10.1101/2025...

Congratulations to Philipp Mauker & the CHalo Crew for programming with HaloTag!
#chembio #fluorescence #friday
October 1, 2025 at 1:45 PM
Reposted by Julian Kompa
My initial assessment of this paper ⬇️ was brief, so let’s have a better look at it:
🧵
September 29, 2025 at 5:51 PM
Reposted by Julian Kompa
Don’t miss the chance to learn about MINFLUX sample preparation!
Register now for our webinar on Wednesday, October 1, 15:30 CEST: link.abberior.rocks/sampleprep
#MINFLUX #SMLM #superresolution #SamplePrep
September 25, 2025 at 1:15 PM
Reposted by Julian Kompa
Order, chaos & complexity

#Mitochondria in #muscle cells 💪🔬, color-coded by 3D depth 🧪
August 19, 2025 at 2:42 PM
Reposted by Julian Kompa
How do you quantify cell structures which are deformed between different observations? Our preprint shows how to perform Simultaneous QUAntification of Structure and Structural Heterogeneity (SQUASSH) on 3D fluorescence microscopy data. (1/5)
www.biorxiv.org/content/10.1...
Extracting biological structure and heterogeneity from the nano to the macro scale
Fluorescence microscopy is an essential tool in biology. It has revealed great variability at multiple scales, in macromolecular complexes, cells, and organisms. Understanding this variability will re...
www.biorxiv.org
August 12, 2025 at 4:20 PM
Reposted by Julian Kompa
We are searching for a talented master student to join our team! Please apply
August 7, 2025 at 7:51 PM
Reposted by Julian Kompa
Nature Methods is also hiring to replace me (applications close August 4th!!!) and I will do everything I can to support their next bioimaging editor (ask me anything!). springernature.wd3.myworkdayjobs.com/SpringerNatu...
Associate Editor or Senior Editor, Nature Methods
Title: Associate or Senior Editor, Nature Methods Organization: Nature Portfolio Locations: New York, Jersey City, Shanghai or Beijing Closing Date: August 3, 2025    About Springer Nature Springer Na...
springernature.wd3.myworkdayjobs.com
August 1, 2025 at 2:27 PM
Reposted by Julian Kompa
🚨 2 × PhD positions @EPFL! 🚨
Help us push the boundaries of fluorescence microscopy - DNA nanotech, custom optics & spatial omics in Lausanne 🇨🇭. Start Jan 2026. Send CV + motivation + 2 refs → fschueder@ethz.ch
#PhD #Hiring #microscopy #SuperResolution #SpatialOmics #DNAPAINT #FLASHPAINT
July 31, 2025 at 8:56 AM
Reposted by Julian Kompa
Opening for a professorship in multimodal imaging in the context of our cluster of excellence #3DMM2O. Here is the full advertisement with all details: tinyurl.com/2ksy2b2s
July 28, 2025 at 9:50 AM
Productive weeks at the Chemical Biology department at @mpi-mr @kjohnsson 🎉
Check out the fantastic work by @steffi-k on SNAP-tag2 and @deensun3 on KinProLa in @natchembio.nature.com

We also released a great collab with @zhixingchen2 on the photophysics of self-labeling tags in @pnas.org. (1/4)
July 29, 2025 at 7:24 AM
Reposted by Julian Kompa
Transitioning to PDBx/mmCIF and Extended PDB IDs
PDB users are strongly encouraged to make changes to software; use the full 12-character ID in all communications; and encourage others to adopt ASAP

Details at wwPDB: www.wwpdb.org/news/n...
July 16, 2025 at 5:01 PM
Reposted by Julian Kompa
Hello microscopists!! Help needed - does anybody know of any good Mn2+ indicators that are good in live cell microscopy assays ?

Never worked with them before and not sure if there are any reliable & affordable ones out there..? Reposts appreciated 🙏🙏
July 10, 2025 at 7:49 PM
Reposted by Julian Kompa
Teaching an old bacterial protein new tricks: Fast, bright and reversible rhodamine tags for live-cell imaging:

www.biorxiv.org/content/10.1...

Congratulations to Julian Kompa and the entire team.
Fast, Bright and Reversible Rhodamine Tags for Live-Cell Imaging
We present Rho-tag and SiR-tag, engineered protein tags derived from bacterial multidrug-resistance proteins that bind unsubstituted (silicon-) rhodamines with nanomolar affinity, enabling fast, rever...
www.biorxiv.org
July 9, 2025 at 7:58 PM
Reposted by Julian Kompa
📣Paper alert! Interested in faster and brighter protein labeling than before? 👀 @steffi-k.bsky.social & other colleagues have developed an improved tool for labeling proteins with synthetic fluorophores for bioimaging. Also works in STED microscopy 🤩🔬 Congratulations!🥳
www.nature.com/articles/s41...
SNAP-tag2 for faster and brighter protein labeling - Nature Chemical Biology
SNAP-tag is a widespread tool for labeling protein for bioimaging. Now, Kühn et al. report SNAP-tag2 with increased labeling kinetics and brightness, which translates into a better performance in live...
www.nature.com
July 3, 2025 at 12:09 PM
Reposted by Julian Kompa
Please check out our new high-affinity split-HaloTag for live-cell protein labeling www.biorxiv.org/content/10.1...
Congratulations to Yin-Hsi Lin!
www.biorxiv.org
June 16, 2025 at 2:24 PM
Reposted by Julian Kompa
Applications are now open for the 4th edition of the “Ecole de Physique des Houches” on Fluorescence Markers for Advanced Microscopies, a WE-Heraeus seminar.
March 15th-20th 2026
Join us to learn everything you wanted to know about Fluorescent Markers for advanced microscopies.
May 26, 2025 at 11:52 AM
The next generation of bright rhodamine probes (BD dyes) from @zhixingchen2.bsky.social's lab raises the bar for photostability 🤩
May 21, 2025 at 6:40 AM
Congrats on opening your own lab in Frankfurt @goetheuni.bsky.social , Till 👏🏼
Looking forward to future fancy images and interesting biology! 🦠🔬
Excited to share my first post on Bluesky: I’ve recently been appointed as a Professor at Goethe University Frankfurt! 🎉

The Stephan Lab will use advanced bioimaging 🔬🧫 to explore how organelles collaborate to maintain subcellular architecture and metabolism.
May 3, 2025 at 12:36 PM
Reposted by Julian Kompa
Happy to share our new publication in ACS Chemical Biology @pubs.acs.org reporting a new chemical biology tool – dual SLIPT! Congratulations to first author Kristina Bayer @XXX, all co-authors and collaborator Shige Yoshimura @XXX. Open Access:
pubs.acs.org/doi/10.1021/... (1/5)
Dual SLIPT–A Lipid Mimic to Enable Spatiotemporally Defined, Sequential Protein Dimerization
Spatiotemporal control of proteins is crucial for cellular phenomena such as signal integration, propagation, as well as managing crosstalk. In membrane-associated signaling, this regulation is often enabled by lipids, wherein highly dynamic, sequential recruitment of interacting proteins is key to successful signaling. Here, we present dual SLIPT (self-localizing ligand-induced protein translocation), a lipid-analog tool, capable of emulating this lipid-mediated sequential recruitment of any two proteins of interest. Dual SLIPT self-localizes to the inner leaflet of the plasma membrane (PM). There, dual SLIPT presents trimethoprim (TMP) and HaloTag ligand (HTL) to cytosolic proteins of interest (POIs), whereupon POIs fused to the protein tags iK6eDHFR, or to HOB are recruited. A systematic extension of the linkers connecting the two mutually orthogonal headgroups was implemented to overcome the steric clash between the recruited POIs. Using Förster resonance energy transfer (FRET), we verify that the resulting probe is capable of simultaneous binding of both proteins of interest, as well as their dimerization. Dual SLIPT was found to be particularly suitable for use in physiologically relevant concentrations, such as recruitment via tightly regulated, transient lipid species. We further expanded dual SLIPT to the photocontrollable dual SLIPTNVOC, by introducing a photocaging group onto the TMP moiety. Dual SLIPTNVOC enables sequential and spatiotemporally defined dimerization upon blue light irradiation. Thus, dual SLIPTNVOC serves as a close mimic of physiology, enabling interrogation of dynamic cytosol-to-plasma membrane recruitment events and their impact on signaling.
pubs.acs.org
April 25, 2025 at 1:00 PM
Reposted by Julian Kompa
Happy to see my Postdoc work out @natbiotech.nature.com. Using HaloTag and synthetic fluorophores instead of FPs enables us to shift the spectral properties of kinase activity reporters (KARs) to the far-red 🔬. Huge thanks to everyone involved @jinzhanglab.bsky.social!
www.nature.com/articles/s41...
Far-red chemigenetic kinase biosensors enable multiplexed and super-resolved imaging of signaling networks - Nature Biotechnology
Far-red kinase biosensors are applied to image kinase signaling networks at super resolution.
www.nature.com
April 21, 2025 at 9:28 AM