Josep Sardanyés Cayuela
@josepsardanyes.bsky.social
Researcher at https://www.crm.cat/ + CSIC Associated Unit I2SysBio/CRM https://www.i2sysbio.es/associated-units/ • Dynamical Systems • Nonlinearity • Biology
Reposted by Josep Sardanyés Cayuela
Thanks Sergi!
Congratulations, Blai Vidiella (@blaividiella.bsky.social), on being nominee for the FRCCS Thom Young Research Award 2025! Blai is an exceptional complex systems researcher and one of my most valued collaborators. iutdijon.u-bourgogne.fr/ccs-france/t... #EvoBio #Ecology #ComplexSystems
June 11, 2025 at 9:59 AM
Thanks Sergi!
Reposted by Josep Sardanyés Cayuela
Exciting paper from Sergi showing similarity in the scientific progress and the technological evolution!
🧪 #EvoBio
🧪 #EvoBio
Can the structure of knowledge evolve like life itself?
In our new MBE paper, we show that the Gene Ontology evolves through mechanisms shared with cultural and technological systems—reuse, modularity, and curator-driven restructuring.
Here’s what we found: 🧵
In our new MBE paper, we show that the Gene Ontology evolves through mechanisms shared with cultural and technological systems—reuse, modularity, and curator-driven restructuring.
Here’s what we found: 🧵
June 11, 2025 at 9:31 AM
Exciting paper from Sergi showing similarity in the scientific progress and the technological evolution!
🧪 #EvoBio
🧪 #EvoBio
Reposted by Josep Sardanyés Cayuela
Here there is a direct link to our paper:
"Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function"
doi.org/10.1093/molb...
"Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function"
doi.org/10.1093/molb...
Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function
Abstract. The Gene Ontology (GO) is a central resource for representing biological knowledge, yet its internal structure is often treated as static—or as a
doi.org
June 11, 2025 at 10:10 AM
Here there is a direct link to our paper:
"Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function"
doi.org/10.1093/molb...
"Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function"
doi.org/10.1093/molb...
Reposted by Josep Sardanyés Cayuela
I'm very grateful to Rosa Fernandez for inviting me to the 2024 LifeHub conference in La Cristalera, which inspired this article.
@molbioevol.bsky.social
🔗 Read the full paper here: academic.oup.com/mbe/article/...
#Genomics #Ontology #CulturalEvolution
@molbioevol.bsky.social
🔗 Read the full paper here: academic.oup.com/mbe/article/...
#Genomics #Ontology #CulturalEvolution
Molecular Biology and Evolution | Oxford Academic
The official journal of the Society for Molecular Biology and Evolution. Publishes research at the interface of molecular (including genomics) and evolutionary biology.
academic.oup.com
June 11, 2025 at 7:36 AM
I'm very grateful to Rosa Fernandez for inviting me to the 2024 LifeHub conference in La Cristalera, which inspired this article.
@molbioevol.bsky.social
🔗 Read the full paper here: academic.oup.com/mbe/article/...
#Genomics #Ontology #CulturalEvolution
@molbioevol.bsky.social
🔗 Read the full paper here: academic.oup.com/mbe/article/...
#Genomics #Ontology #CulturalEvolution
Reposted by Josep Sardanyés Cayuela
Can the structure of knowledge evolve like life itself?
In our new MBE paper, we show that the Gene Ontology evolves through mechanisms shared with cultural and technological systems—reuse, modularity, and curator-driven restructuring.
Here’s what we found: 🧵
In our new MBE paper, we show that the Gene Ontology evolves through mechanisms shared with cultural and technological systems—reuse, modularity, and curator-driven restructuring.
Here’s what we found: 🧵
June 11, 2025 at 7:35 AM
Can the structure of knowledge evolve like life itself?
In our new MBE paper, we show that the Gene Ontology evolves through mechanisms shared with cultural and technological systems—reuse, modularity, and curator-driven restructuring.
Here’s what we found: 🧵
In our new MBE paper, we show that the Gene Ontology evolves through mechanisms shared with cultural and technological systems—reuse, modularity, and curator-driven restructuring.
Here’s what we found: 🧵
Again, face to face with chaos. Now in a simple non-autonomous model with cooperation and habitat loss. Working hard in the manuscript !
June 8, 2025 at 7:51 PM
Again, face to face with chaos. Now in a simple non-autonomous model with cooperation and habitat loss. Working hard in the manuscript !
Reposted by Josep Sardanyés Cayuela
Marcos Rodríguez, Irene Cantallops, Pilar Domingo-Calap @pilardomingoc.bsky.social & Josep Sardanyés @josepsardanyes.bsky.social from I2SysBio published a paper about quantifying dynamics of #Klebsiella and its #phages, focused on phage-resistant mutants 🦠🧪 #microsky @csic.es @ucciuv.bsky.social
May 31, 2025 at 8:39 AM
Marcos Rodríguez, Irene Cantallops, Pilar Domingo-Calap @pilardomingoc.bsky.social & Josep Sardanyés @josepsardanyes.bsky.social from I2SysBio published a paper about quantifying dynamics of #Klebsiella and its #phages, focused on phage-resistant mutants 🦠🧪 #microsky @csic.es @ucciuv.bsky.social
Reposted by Josep Sardanyés Cayuela
Our first collaboration with @josepsardanyes.bsky.social, first of many more! Great job Marcos and Irene.
May 31, 2025 at 9:04 AM
Our first collaboration with @josepsardanyes.bsky.social, first of many more! Great job Marcos and Irene.
Reposted by Josep Sardanyés Cayuela
Seminar on complexity time measures at the Centre de Recerca Matemàtica on July.
www.crm.cat/seminar-ordi...
www.crm.cat/seminar-ordi...
SEMINAR: Ordinal patterns-based complexity measures: From photonic neurons to fractals - Centre de Recerca Matemàtica
SEMINAR Ordinal patterns-based complexity measures: From photonic neurons to fractals Andrés Aragoneses Whitman College SEMINAR | Ordinal patterns-based complexity measures: From photonic neurons to f...
www.crm.cat
May 12, 2025 at 10:59 AM
Seminar on complexity time measures at the Centre de Recerca Matemàtica on July.
www.crm.cat/seminar-ordi...
www.crm.cat/seminar-ordi...
Seminar on complexity time measures at the Centre de Recerca Matemàtica on July.
www.crm.cat/seminar-ordi...
www.crm.cat/seminar-ordi...
SEMINAR: Ordinal patterns-based complexity measures: From photonic neurons to fractals - Centre de Recerca Matemàtica
SEMINAR Ordinal patterns-based complexity measures: From photonic neurons to fractals Andrés Aragoneses Whitman College SEMINAR | Ordinal patterns-based complexity measures: From photonic neurons to f...
www.crm.cat
May 12, 2025 at 10:59 AM
Seminar on complexity time measures at the Centre de Recerca Matemàtica on July.
www.crm.cat/seminar-ordi...
www.crm.cat/seminar-ordi...
Reposted by Josep Sardanyés Cayuela
How can biological systems anticipate future events? In our new paper with @jordiplam.bsky.social, we show how a simple genetic circuit can predict future trends through a simple (and perhaps widespread) mechanism @drmichaellevin.bsky.social @koseskalab.bsky.social www.biorxiv.org/content/10.1...
April 28, 2025 at 10:42 PM
How can biological systems anticipate future events? In our new paper with @jordiplam.bsky.social, we show how a simple genetic circuit can predict future trends through a simple (and perhaps widespread) mechanism @drmichaellevin.bsky.social @koseskalab.bsky.social www.biorxiv.org/content/10.1...
Exploring a 300-dimensional dynamical system (parameter space 50-dimensional)
April 11, 2025 at 5:01 PM
Exploring a 300-dimensional dynamical system (parameter space 50-dimensional)
Reposted by Josep Sardanyés Cayuela
Reposted by Josep Sardanyés Cayuela
Another day, another funky gene regulatory network behaviour! In our latest paper, we show how the mushroom bifurcation can encode an ultra-long biochemical timer. Even more interestingly, extrinsic noise can be used to improve timing precision! 🤯
@mathsmaret.bsky.social @josepsardanyes.bsky.social
@mathsmaret.bsky.social @josepsardanyes.bsky.social
Local nearby bifurcations lead to synergies in critical slowing down: The case of mushroom bifurcations
The behavior of nonlinear systems near critical transitions has significant implications for stability, transients, and resilience in complex systems. Transient times, $\ensuremath{\tau}$, become extr...
journals.aps.org
March 5, 2025 at 6:39 PM
Another day, another funky gene regulatory network behaviour! In our latest paper, we show how the mushroom bifurcation can encode an ultra-long biochemical timer. Even more interestingly, extrinsic noise can be used to improve timing precision! 🤯
@mathsmaret.bsky.social @josepsardanyes.bsky.social
@mathsmaret.bsky.social @josepsardanyes.bsky.social
Reposted by Josep Sardanyés Cayuela
My first paper in systems biology is in PRE! We investigate how local nearby bifurcations lead to synergies in critical slowing down, specifically the case of mushroom bifurcations in gene regulatory networks!
journals.aps.org/pre/abstract...
@perez-carrasco.bsky.social @josepsardanyes.bsky.social
journals.aps.org/pre/abstract...
@perez-carrasco.bsky.social @josepsardanyes.bsky.social
Local nearby bifurcations lead to synergies in critical slowing down: The case of mushroom bifurcations
The behavior of nonlinear systems near critical transitions has significant implications for stability, transients, and resilience in complex systems. Transient times, $\ensuremath{\tau}$, become extr...
journals.aps.org
March 3, 2025 at 1:35 PM
My first paper in systems biology is in PRE! We investigate how local nearby bifurcations lead to synergies in critical slowing down, specifically the case of mushroom bifurcations in gene regulatory networks!
journals.aps.org/pre/abstract...
@perez-carrasco.bsky.social @josepsardanyes.bsky.social
journals.aps.org/pre/abstract...
@perez-carrasco.bsky.social @josepsardanyes.bsky.social
First research article showing a nonlinear increase in transient times when local bifurcations get close.
#Nonlinearity #Transients
👻 + 👻 != 👻👻
journals.aps.org/pre/abstract...
#Nonlinearity #Transients
👻 + 👻 != 👻👻
journals.aps.org/pre/abstract...
Local nearby bifurcations lead to synergies in critical slowing down: The case of mushroom bifurcations
The behavior of nonlinear systems near critical transitions has significant implications for stability, transients, and resilience in complex systems. Transient times, $\ensuremath{\tau}$, become extr...
journals.aps.org
February 28, 2025 at 6:15 PM
First research article showing a nonlinear increase in transient times when local bifurcations get close.
#Nonlinearity #Transients
👻 + 👻 != 👻👻
journals.aps.org/pre/abstract...
#Nonlinearity #Transients
👻 + 👻 != 👻👻
journals.aps.org/pre/abstract...
Reposted by Josep Sardanyés Cayuela
Ciencia y videojuegos
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
The Tipping Point - Josep Serdanyes / Daniel Ditlevsen
YouTube video by Museo Arcade Vintage
youtu.be
February 25, 2025 at 1:04 PM
Ciencia y videojuegos
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
Ciencia y videojuegos
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
The Tipping Point - Josep Serdanyes / Daniel Ditlevsen
YouTube video by Museo Arcade Vintage
youtu.be
February 25, 2025 at 1:04 PM
Ciencia y videojuegos
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
Science and videogames
✍️🏔️💻💾📈👾🏔️
@museoarcadevintage.bsky.social
@svalver.bsky.social
youtu.be/Q6muO81YP9I?...
New article on mathematical quasispecies
arxiv.org/abs/2412.10475
arxiv.org/abs/2412.10475
Quasispecies dynamics with time lags and periodic fluctuations in replication
Quasispecies theory provides the conceptual and theoretical bases for describing the dynamics of biological information of replicators subject to large mutation rates. This theory, initially conceived...
arxiv.org
December 17, 2024 at 11:22 AM
New article on mathematical quasispecies
arxiv.org/abs/2412.10475
arxiv.org/abs/2412.10475
Kun-Lin destroyed #BeachHead by Bruce Carver & Kevin Homer #AccesSoftware 1983
en.m.wikipedia.org/wiki/Access_...
en.m.wikipedia.org/wiki/Access_...
December 14, 2024 at 5:55 PM
Kun-Lin destroyed #BeachHead by Bruce Carver & Kevin Homer #AccesSoftware 1983
en.m.wikipedia.org/wiki/Access_...
en.m.wikipedia.org/wiki/Access_...