Hannah Trivett
@hannahtriv.bsky.social
Research Fellow in the @halllab.bsky.social at @unibirmingham.bsky.social | microbiomes | microbial genomics | @amiposts.bsky.social OHAG member👩🏼💻 💩 🧬
Pinned
Academic and clinical perspectives of metagenome sequencing as a diagnostic tool for infectious disease: an interpretive phenomenological study
rdcu.be
Excited to share that my first chapter of my #PhD has been published! This was a real labour of love, using qualitative research to set the scene for current #infectiousdisease diagnostic landscapes and how #metagenomics could fit into clinical settings to diagnose infections 🥳
rdcu.be/efTsE
rdcu.be/efTsE
Thank you @target-amr.bsky.social for inviting me to share the benefits using #QualitativeReasearch for AMR Genomics and my experience exploring academic and clinical perspectives of infectious disease diagnostics!
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
Using qualitative research to support quantitative research in AMR genomics
YouTube video by TARGetAMR
youtu.be
October 25, 2025 at 1:28 PM
Thank you @target-amr.bsky.social for inviting me to share the benefits using #QualitativeReasearch for AMR Genomics and my experience exploring academic and clinical perspectives of infectious disease diagnostics!
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
Reposted by Hannah Trivett
⏰ 2 hours to go!
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
October 20, 2025 at 8:59 AM
⏰ 2 hours to go!
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
Today wraps up an inspiring week in Heidelberg, Germany at @embl.org for the Human Microbiome Conference, where I shared my first #PostDoc project from @halllab.bsky.social
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
September 19, 2025 at 1:14 PM
Today wraps up an inspiring week in Heidelberg, Germany at @embl.org for the Human Microbiome Conference, where I shared my first #PostDoc project from @halllab.bsky.social
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
Reposted by Hannah Trivett
Such an engaged audience at #EESMicrobiome with lots of great questions after my talk!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
🦠🔬 We’re starting #EESMicrobiome Session 3: Early life microbiome – development and impact
🔸Chaired by Tami Lieberman (MIT) & Mani Arumugam (University of Copenhagen)
🎤 First talk:
'Exploring early life microbiome interactions'
by Lindsay Hall @unibirmingham.bsky.social @halllab.bsky.social
🔸Chaired by Tami Lieberman (MIT) & Mani Arumugam (University of Copenhagen)
🎤 First talk:
'Exploring early life microbiome interactions'
by Lindsay Hall @unibirmingham.bsky.social @halllab.bsky.social
September 17, 2025 at 1:37 PM
Such an engaged audience at #EESMicrobiome with lots of great questions after my talk!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
Reposted by Hannah Trivett
A little tool I've developed: ExpEvoAnalyzer (github.com/samhorsfield...) - a snakemake pipeline that compares isolate paired-read data from an experimental evolution study to a reference isolate, producing functionally-annotated SNPs in a presence/absence matrix.
GitHub - samhorsfield96/ExpEvoAnalyzer: A workflow to analyse experimental evolution data.
A workflow to analyse experimental evolution data. - samhorsfield96/ExpEvoAnalyzer
github.com
September 11, 2025 at 2:16 PM
A little tool I've developed: ExpEvoAnalyzer (github.com/samhorsfield...) - a snakemake pipeline that compares isolate paired-read data from an experimental evolution study to a reference isolate, producing functionally-annotated SNPs in a presence/absence matrix.
Reposted by Hannah Trivett
Reposted by Hannah Trivett
There are half a million cases of invasive non-Typhoidal Salmonella (iNTS) every year and while you might know S. Typhimurim and Enteritidis, you may not have heard of S. Panama 💩 🩸 🧫 💊 Check out our latest in @lancetmicrobe.bsky.social doi.org/10.1016/j.la... and the 🧵 below to find out more 1/n
July 27, 2025 at 8:35 AM
There are half a million cases of invasive non-Typhoidal Salmonella (iNTS) every year and while you might know S. Typhimurim and Enteritidis, you may not have heard of S. Panama 💩 🩸 🧫 💊 Check out our latest in @lancetmicrobe.bsky.social doi.org/10.1016/j.la... and the 🧵 below to find out more 1/n
Reposted by Hannah Trivett
Day 2 of IMI Summer school 2025 kicks off with some funky images from @contamclub.bsky.social and Mathematical modelling of an infectious disease with Rowland Seymour 🦠🦠🤢🤢
July 1, 2025 at 9:27 AM
Day 2 of IMI Summer school 2025 kicks off with some funky images from @contamclub.bsky.social and Mathematical modelling of an infectious disease with Rowland Seymour 🦠🦠🤢🤢
Reposted by Hannah Trivett
Practicing pipetting and making dilutions - great start to IMI Summer school 2025 with @hannahtriv.bsky.social @miribiome.bsky.social @bpettifor.bsky.social
June 30, 2025 at 10:34 AM
Practicing pipetting and making dilutions - great start to IMI Summer school 2025 with @hannahtriv.bsky.social @miribiome.bsky.social @bpettifor.bsky.social
Reposted by Hannah Trivett
And so it begins! IMI Summer school 2025 follow us for all the fun this week 🦠🦠
June 30, 2025 at 8:19 AM
And so it begins! IMI Summer school 2025 follow us for all the fun this week 🦠🦠
Reposted by Hannah Trivett
🌍 #WorldMicrobiomeDay 2025
At @halllab.bsky.social we’re uncovering how microbes - right from day one - help shape the gut, strengthen immunity, and protect against infection.
We're exploring how, when, and which microbes colonise - in order to develop interventions for a healthier start to life.
At @halllab.bsky.social we’re uncovering how microbes - right from day one - help shape the gut, strengthen immunity, and protect against infection.
We're exploring how, when, and which microbes colonise - in order to develop interventions for a healthier start to life.
June 27, 2025 at 9:44 AM
🌍 #WorldMicrobiomeDay 2025
At @halllab.bsky.social we’re uncovering how microbes - right from day one - help shape the gut, strengthen immunity, and protect against infection.
We're exploring how, when, and which microbes colonise - in order to develop interventions for a healthier start to life.
At @halllab.bsky.social we’re uncovering how microbes - right from day one - help shape the gut, strengthen immunity, and protect against infection.
We're exploring how, when, and which microbes colonise - in order to develop interventions for a healthier start to life.
🚨New Article🚨
Can next generation sequencing help us better understand the human #microbiome?
Speaking with @halllab.bsky.social and @gilbertjacka.bsky.social we explore how #NGS is transforming microbiome research for health and disease.
tinyurl.com/4awcpwz2
#Genomics #Microbiology #PublicHealth
Can next generation sequencing help us better understand the human #microbiome?
Speaking with @halllab.bsky.social and @gilbertjacka.bsky.social we explore how #NGS is transforming microbiome research for health and disease.
tinyurl.com/4awcpwz2
#Genomics #Microbiology #PublicHealth
Using Next-Generation Sequencing To Understand the Role of the Microbiome in Health and Disease
This article explores how next-generation sequencing has revolutionized microbiome research, enabling comprehensive analysis of microbial communities and their roles in health and disease.
www.technologynetworks.com
June 17, 2025 at 7:43 AM
🚨New Article🚨
Can next generation sequencing help us better understand the human #microbiome?
Speaking with @halllab.bsky.social and @gilbertjacka.bsky.social we explore how #NGS is transforming microbiome research for health and disease.
tinyurl.com/4awcpwz2
#Genomics #Microbiology #PublicHealth
Can next generation sequencing help us better understand the human #microbiome?
Speaking with @halllab.bsky.social and @gilbertjacka.bsky.social we explore how #NGS is transforming microbiome research for health and disease.
tinyurl.com/4awcpwz2
#Genomics #Microbiology #PublicHealth
Reposted by Hannah Trivett
(1/6) 🌟 Excited to share our new paper!
Advancing microbiome safety assessments: opportunities, challenges & recommendations 🧫🦠
This work came out of an academic–industry workshop hosted by @microbiologysociety.org in early 2024.
🔗 www.microbiologyresearch.org/content/jour...
Advancing microbiome safety assessments: opportunities, challenges & recommendations 🧫🦠
This work came out of an academic–industry workshop hosted by @microbiologysociety.org in early 2024.
🔗 www.microbiologyresearch.org/content/jour...
Assessing the safety of microbiome perturbations
Everyday actions such as eating, tooth brushing or applying cosmetics inherently modulate our microbiome. Advances in sequencing technologies now facilitate detailed microbial profiling, driving inten...
www.microbiologyresearch.org
May 27, 2025 at 4:52 PM
(1/6) 🌟 Excited to share our new paper!
Advancing microbiome safety assessments: opportunities, challenges & recommendations 🧫🦠
This work came out of an academic–industry workshop hosted by @microbiologysociety.org in early 2024.
🔗 www.microbiologyresearch.org/content/jour...
Advancing microbiome safety assessments: opportunities, challenges & recommendations 🧫🦠
This work came out of an academic–industry workshop hosted by @microbiologysociety.org in early 2024.
🔗 www.microbiologyresearch.org/content/jour...
Reposted by Hannah Trivett
1/12 🎉 We're excited to announce our Genome Medicine paper benchmarking 1000+ metagenomes (DNA) and metatranscriptomes (RNA) from infectious intestinal disease patients against pathogen diagnostics. The full dataset is public to accelerate pathogen discovery & surveillance: doi.org/10.1186/s130...
May 20, 2025 at 9:20 AM
1/12 🎉 We're excited to announce our Genome Medicine paper benchmarking 1000+ metagenomes (DNA) and metatranscriptomes (RNA) from infectious intestinal disease patients against pathogen diagnostics. The full dataset is public to accelerate pathogen discovery & surveillance: doi.org/10.1186/s130...
Reposted by Hannah Trivett
🧵5 Top Free Alternatives to BioRender for Scientific Illustrations!
These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs.
Save and share the post!
These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs.
Save and share the post!
May 13, 2025 at 7:55 PM
🧵5 Top Free Alternatives to BioRender for Scientific Illustrations!
These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs.
Save and share the post!
These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs.
Save and share the post!
Reposted by Hannah Trivett
A very nice example of the use of #metagenomics for diagnosis of rare #infections
"Woman's eyesight saved by cutting-edge test after mystery infection"
It was "a rare strain of the bacterial infection leptospirosis"
#MicroSky
www.bbc.co.uk/news/article...
"Woman's eyesight saved by cutting-edge test after mystery infection"
It was "a rare strain of the bacterial infection leptospirosis"
#MicroSky
www.bbc.co.uk/news/article...
Metagenomics test saves woman's sight after mystery infection
After years of suffering, a cutting-edge test diagnosed Ellie Irwin with a rare bacterial infection.
www.bbc.co.uk
April 30, 2025 at 9:45 PM
A very nice example of the use of #metagenomics for diagnosis of rare #infections
"Woman's eyesight saved by cutting-edge test after mystery infection"
It was "a rare strain of the bacterial infection leptospirosis"
#MicroSky
www.bbc.co.uk/news/article...
"Woman's eyesight saved by cutting-edge test after mystery infection"
It was "a rare strain of the bacterial infection leptospirosis"
#MicroSky
www.bbc.co.uk/news/article...
Reposted by Hannah Trivett
Happy to share the first preprint from my lab. Great work by Lewis Fisher and collaboration with Jukka Corander
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
High frequency body site translocation of nosocomial Pseudomonas aeruginosa
Pseudomonas aeruginosa is an important nosocomial pathogen which can cause serious infections across diverse anatomic locations. Infections can spread within an individual to different body sites, but...
www.biorxiv.org
May 1, 2025 at 6:32 AM
Happy to share the first preprint from my lab. Great work by Lewis Fisher and collaboration with Jukka Corander
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Hannah Trivett
"Importantly, the metagenomic tests provide results within 6–8 h"
That's quick!
#metagenomics #IDSky #ClinMicro #medsky @lancetmicrobe.bsky.social
www.thelancet.com/journals/lan...
That's quick!
#metagenomics #IDSky #ClinMicro #medsky @lancetmicrobe.bsky.social
www.thelancet.com/journals/lan...
UK launch metagenomic pathogen surveillance programme
On Jan 30, 2025, the UK Health Security Agency (UKHSA) announced the launch of the
metagenomics Surveillance Collaboration and Analysis Programme (mSCAPE)—the world’s
first biosecurity surveillance sy...
www.thelancet.com
April 14, 2025 at 7:32 AM
"Importantly, the metagenomic tests provide results within 6–8 h"
That's quick!
#metagenomics #IDSky #ClinMicro #medsky @lancetmicrobe.bsky.social
www.thelancet.com/journals/lan...
That's quick!
#metagenomics #IDSky #ClinMicro #medsky @lancetmicrobe.bsky.social
www.thelancet.com/journals/lan...
Reposted by Hannah Trivett
Our preprint on the bystander effect of antibiotics on the microbiome in severely ill adults with sepsis in Blantyre, Malawi 🇲🇼 is out! doi.org/10.1101/2025...
We used metagenomics 🧬 + Bayesian modelling 📊 to track microbiome & resistome changes pre-, during, and post-treatment. (1/2)
We used metagenomics 🧬 + Bayesian modelling 📊 to track microbiome & resistome changes pre-, during, and post-treatment. (1/2)
April 7, 2025 at 7:54 AM
Our preprint on the bystander effect of antibiotics on the microbiome in severely ill adults with sepsis in Blantyre, Malawi 🇲🇼 is out! doi.org/10.1101/2025...
We used metagenomics 🧬 + Bayesian modelling 📊 to track microbiome & resistome changes pre-, during, and post-treatment. (1/2)
We used metagenomics 🧬 + Bayesian modelling 📊 to track microbiome & resistome changes pre-, during, and post-treatment. (1/2)
Excited to share that my first chapter of my #PhD has been published! This was a real labour of love, using qualitative research to set the scene for current #infectiousdisease diagnostic landscapes and how #metagenomics could fit into clinical settings to diagnose infections 🥳
rdcu.be/efTsE
rdcu.be/efTsE
Academic and clinical perspectives of metagenome sequencing as a diagnostic tool for infectious disease: an interpretive phenomenological study
rdcu.be
April 1, 2025 at 4:47 PM
Excited to share that my first chapter of my #PhD has been published! This was a real labour of love, using qualitative research to set the scene for current #infectiousdisease diagnostic landscapes and how #metagenomics could fit into clinical settings to diagnose infections 🥳
rdcu.be/efTsE
rdcu.be/efTsE
Fantastic talk from @raymondkiu.bsky.social on preterm infant gut microbiome in the Knocking Out AMR session this afternoon! Proud to be part of @halllab.bsky.social surrounded by great scientists and research 🧫🧬🥼 #Microbio25 @microbiologysociety.org
April 1, 2025 at 2:55 PM
Fantastic talk from @raymondkiu.bsky.social on preterm infant gut microbiome in the Knocking Out AMR session this afternoon! Proud to be part of @halllab.bsky.social surrounded by great scientists and research 🧫🧬🥼 #Microbio25 @microbiologysociety.org
Reposted by Hannah Trivett
Well deserved Lindsay!! @halllab.bsky.social Amazing public engagement prize lecture at #Microbio2025 from my boss 😀 A role model in science comms #MicrobiomeSky
@imibirmingham.bsky.social
@microbiologysociety.org
@imibirmingham.bsky.social
@microbiologysociety.org
April 1, 2025 at 9:13 AM
Well deserved Lindsay!! @halllab.bsky.social Amazing public engagement prize lecture at #Microbio2025 from my boss 😀 A role model in science comms #MicrobiomeSky
@imibirmingham.bsky.social
@microbiologysociety.org
@imibirmingham.bsky.social
@microbiologysociety.org
Reposted by Hannah Trivett
Find out what my amazing colleagues are working on at #Microbio2025 Luke: poster 263 (Iron transporter in Bifidobacterium) and Charlie: poster 255 (therapeutic Bifidobacterium for IBD). @lukeacton.bsky.social @charliejones17.bsky.social @halllab.bsky.social @imibirmingham.bsky.social
April 1, 2025 at 11:01 AM
Find out what my amazing colleagues are working on at #Microbio2025 Luke: poster 263 (Iron transporter in Bifidobacterium) and Charlie: poster 255 (therapeutic Bifidobacterium for IBD). @lukeacton.bsky.social @charliejones17.bsky.social @halllab.bsky.social @imibirmingham.bsky.social
As part of British Science Week I was invited back to my sixth form to host a careers session with year 12 and year 13. It was great to go back and catch up with everyone, share insights into career opportunities in biological sciences and talk about my research! #BSW25 #careers #STEM
March 7, 2025 at 8:29 PM
It was great to be back in Liverpool for the HPRU-GI conference, where I presented the conclusions of my PhD project. Thank you to everyone for the feedback, and those who identified opportunities to collaborate in the near future @livuni-ives.bsky.social #metagenomics #gastrointestinalinfections
March 6, 2025 at 8:00 AM
It was great to be back in Liverpool for the HPRU-GI conference, where I presented the conclusions of my PhD project. Thank you to everyone for the feedback, and those who identified opportunities to collaborate in the near future @livuni-ives.bsky.social #metagenomics #gastrointestinalinfections