Hannah Trivett
@hannahtriv.bsky.social
Research Fellow in the @halllab.bsky.social at @unibirmingham.bsky.social | microbiomes | microbial genomics | @amiposts.bsky.social OHAG member👩🏼💻 💩 🧬
Pinned
Hannah Trivett
@hannahtriv.bsky.social
· Dec 10
Introducing Dr. Hannah Trivett
Class of 2025- Doctor of Philosophy in Medical Microbiology 🧬🧫👩🏼🔬🎓
Class of 2025- Doctor of Philosophy in Medical Microbiology 🧬🧫👩🏼🔬🎓
Reposted by Hannah Trivett
🦠
The impact of phenotypic heterogeneity on fungal pathogenicity and drug resistance
#fungi #mycology #DrugResistance #pathogens
academic.oup.com/femsre/artic...
The impact of phenotypic heterogeneity on fungal pathogenicity and drug resistance
#fungi #mycology #DrugResistance #pathogens
academic.oup.com/femsre/artic...
The impact of phenotypic heterogeneity on fungal pathogenicity and drug resistance
This review discusses the contribution of phenotypic heterogeneity in fungi to pathogenesis and antifungal drug resistance.
academic.oup.com
January 21, 2026 at 2:45 PM
🦠
The impact of phenotypic heterogeneity on fungal pathogenicity and drug resistance
#fungi #mycology #DrugResistance #pathogens
academic.oup.com/femsre/artic...
The impact of phenotypic heterogeneity on fungal pathogenicity and drug resistance
#fungi #mycology #DrugResistance #pathogens
academic.oup.com/femsre/artic...
Reposted by Hannah Trivett
🧬 Free @microbesng.bsky.social PopUp ECR symposium 🧬
UK-based MRes or PhD student, research assistant or postdoc working on microbial genomics or metagenomics?
Present your work and/or chair a session, plus excellent keynote speakers: @halllab.bsky.social and @alexmsalmeida.bsky.social.
#MNGPopUp
UK-based MRes or PhD student, research assistant or postdoc working on microbial genomics or metagenomics?
Present your work and/or chair a session, plus excellent keynote speakers: @halllab.bsky.social and @alexmsalmeida.bsky.social.
#MNGPopUp
January 6, 2026 at 6:29 PM
🧬 Free @microbesng.bsky.social PopUp ECR symposium 🧬
UK-based MRes or PhD student, research assistant or postdoc working on microbial genomics or metagenomics?
Present your work and/or chair a session, plus excellent keynote speakers: @halllab.bsky.social and @alexmsalmeida.bsky.social.
#MNGPopUp
UK-based MRes or PhD student, research assistant or postdoc working on microbial genomics or metagenomics?
Present your work and/or chair a session, plus excellent keynote speakers: @halllab.bsky.social and @alexmsalmeida.bsky.social.
#MNGPopUp
Reposted by Hannah Trivett
Happy New Year – new role! 🎉
We’re looking for a PostDoc to join us in @halllab.bsky.social @unibirmingham.bsky.social.
Full-time, fixed-term to March 2028. Note tight closing date: 11 Jan 2026. CV + cover letter (submit via portal).
Further details 👇
edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
We’re looking for a PostDoc to join us in @halllab.bsky.social @unibirmingham.bsky.social.
Full-time, fixed-term to March 2028. Note tight closing date: 11 Jan 2026. CV + cover letter (submit via portal).
Further details 👇
edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
Research Fellow - Department of Microbes, Infection and Microbiomes - 106849 - Grade 7
To create and contribute to the creation of knowledge by undertaking a specified range of activities as part of an Investigator project funded by Wellcome, focusing on understanding microbial and diet...
edzz.fa.em3.oraclecloud.com
January 7, 2026 at 5:06 PM
Happy New Year – new role! 🎉
We’re looking for a PostDoc to join us in @halllab.bsky.social @unibirmingham.bsky.social.
Full-time, fixed-term to March 2028. Note tight closing date: 11 Jan 2026. CV + cover letter (submit via portal).
Further details 👇
edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
We’re looking for a PostDoc to join us in @halllab.bsky.social @unibirmingham.bsky.social.
Full-time, fixed-term to March 2028. Note tight closing date: 11 Jan 2026. CV + cover letter (submit via portal).
Further details 👇
edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
Reposted by Hannah Trivett
We’re looking for a Summer Intern to generate microscopy videos of bacteria bursting in response to administering antibiotics as part of a public education video on the uses of antibiotics and risks of misuse 🔬
🗓️ Apply by 5 January
➡️ buff.ly/YlUQUho
🗓️ Apply by 5 January
➡️ buff.ly/YlUQUho
December 23, 2025 at 8:45 AM
We’re looking for a Summer Intern to generate microscopy videos of bacteria bursting in response to administering antibiotics as part of a public education video on the uses of antibiotics and risks of misuse 🔬
🗓️ Apply by 5 January
➡️ buff.ly/YlUQUho
🗓️ Apply by 5 January
➡️ buff.ly/YlUQUho
To top off a great few days of science, I had the pleasure of presenting my work on liver disease at #MMEG2025, coming runner up for best 15 min talk! A big thank you to the organisers of MMEG2025 and their sponsors for hosting a great conference this week in Birmingham, looking forward to the next🧬
December 17, 2025 at 7:58 AM
To top off a great few days of science, I had the pleasure of presenting my work on liver disease at #MMEG2025, coming runner up for best 15 min talk! A big thank you to the organisers of MMEG2025 and their sponsors for hosting a great conference this week in Birmingham, looking forward to the next🧬
Reposted by Hannah Trivett
We are recruiting for a number of PhDs in the HPRU in Public Health Genomics, based at @unibirmingham.bsky.social, in collaboration with UKHSA. 🦠🧬
Apply below to work on cutting-edge science and public health priorities! (NB deadline of 9th January / UK only due to funding restrictions)
(1/7)
Apply below to work on cutting-edge science and public health priorities! (NB deadline of 9th January / UK only due to funding restrictions)
(1/7)
December 16, 2025 at 6:50 PM
We are recruiting for a number of PhDs in the HPRU in Public Health Genomics, based at @unibirmingham.bsky.social, in collaboration with UKHSA. 🦠🧬
Apply below to work on cutting-edge science and public health priorities! (NB deadline of 9th January / UK only due to funding restrictions)
(1/7)
Apply below to work on cutting-edge science and public health priorities! (NB deadline of 9th January / UK only due to funding restrictions)
(1/7)
Reposted by Hannah Trivett
Bacterial genomes encode a rich repertoire of antiphage systems, but we still know surprisingly little about when these systems are actually expressed.
In this preprint, Lucas Paoli et al, ask what shapes antiphage systems expression in native contexts.
www.biorxiv.org/content/10.6...
In this preprint, Lucas Paoli et al, ask what shapes antiphage systems expression in native contexts.
www.biorxiv.org/content/10.6...
Environment and physiology shape antiphage system expression
Bacteria and archaea encode on average ten antiphage systems. Quorum sensing, cellular, or transcription factors can regulate specific systems (CRISPR-Cas, CBASS). Yet, a systematic assessment of anti...
www.biorxiv.org
December 15, 2025 at 9:49 PM
Bacterial genomes encode a rich repertoire of antiphage systems, but we still know surprisingly little about when these systems are actually expressed.
In this preprint, Lucas Paoli et al, ask what shapes antiphage systems expression in native contexts.
www.biorxiv.org/content/10.6...
In this preprint, Lucas Paoli et al, ask what shapes antiphage systems expression in native contexts.
www.biorxiv.org/content/10.6...
Starting off day 2 at the Molecular Microbial Ecology Group meeting at Birmingham with a panel discussion on publishing with some great panelist’s this morning #MMEG2025 @amiposts.bsky.social
December 16, 2025 at 9:58 AM
Starting off day 2 at the Molecular Microbial Ecology Group meeting at Birmingham with a panel discussion on publishing with some great panelist’s this morning #MMEG2025 @amiposts.bsky.social
Reposted by Hannah Trivett
The scikit-bio paper in online in Nature Methods! Many thanks to our collaborators, community contributors and reviewers! We couldn’t have done it without you. www.nature.com/articles/s41... #Bioinformatics #OpenSource
Scikit-bio: a fundamental Python library for biological omic data analysis - Nature Methods
Nature Methods - Scikit-bio: a fundamental Python library for biological omic data analysis
www.nature.com
December 11, 2025 at 5:57 PM
The scikit-bio paper in online in Nature Methods! Many thanks to our collaborators, community contributors and reviewers! We couldn’t have done it without you. www.nature.com/articles/s41... #Bioinformatics #OpenSource
Reposted by Hannah Trivett
Can you help my final year project student with her research please?
If you are a student, please try her virtual escape room! tinyurl.com/mr88k53k
If you are not a student, please share/repost to help us reach more students!
If you are a student, please try her virtual escape room! tinyurl.com/mr88k53k
If you are not a student, please share/repost to help us reach more students!
December 11, 2025 at 10:13 AM
Can you help my final year project student with her research please?
If you are a student, please try her virtual escape room! tinyurl.com/mr88k53k
If you are not a student, please share/repost to help us reach more students!
If you are a student, please try her virtual escape room! tinyurl.com/mr88k53k
If you are not a student, please share/repost to help us reach more students!
I am pleased to share that my first postdoc paper from the @halllab.bsky.social is now on bioRxiv! 🎉
We used long-read #metagenomics to explore how the gut microbiome and #antimicrobialresistance landscape shift across advanced chronic #liverdisease (ACLD)
www.biorxiv.org/content/10.6...
We used long-read #metagenomics to explore how the gut microbiome and #antimicrobialresistance landscape shift across advanced chronic #liverdisease (ACLD)
www.biorxiv.org/content/10.6...
Decoding the microbiome and resistome of advanced chronic liver disease through long-read metagenomics
Introduction - Patients with advanced chronic liver disease (ACLD) and underlying cirrhosis frequently require repeated courses of antimicrobial therapy, with both the frequency and spectrum of antimi...
www.biorxiv.org
December 10, 2025 at 12:09 PM
I am pleased to share that my first postdoc paper from the @halllab.bsky.social is now on bioRxiv! 🎉
We used long-read #metagenomics to explore how the gut microbiome and #antimicrobialresistance landscape shift across advanced chronic #liverdisease (ACLD)
www.biorxiv.org/content/10.6...
We used long-read #metagenomics to explore how the gut microbiome and #antimicrobialresistance landscape shift across advanced chronic #liverdisease (ACLD)
www.biorxiv.org/content/10.6...
Introducing Dr. Hannah Trivett
Class of 2025- Doctor of Philosophy in Medical Microbiology 🧬🧫👩🏼🔬🎓
Class of 2025- Doctor of Philosophy in Medical Microbiology 🧬🧫👩🏼🔬🎓
December 10, 2025 at 8:29 AM
Introducing Dr. Hannah Trivett
Class of 2025- Doctor of Philosophy in Medical Microbiology 🧬🧫👩🏼🔬🎓
Class of 2025- Doctor of Philosophy in Medical Microbiology 🧬🧫👩🏼🔬🎓
@amiposts.bsky.social has published an article covering my travels to Germany to attend the Human Microbiome Conference 2025
A big thank you to AMI for supporting my attendance at the conference with their scientific travel grant!
#EESMicrobiome
www.the-microbiologist.com/careers/scie...
A big thank you to AMI for supporting my attendance at the conference with their scientific travel grant!
#EESMicrobiome
www.the-microbiologist.com/careers/scie...
Scientific Event Travel Grant: Hannah returns with renewed motivation and new ideas
Dr Hannah Trivett, University of Birmingham, reports back from EMBL Human Microbiome Conference held in Heidelberg, Germany, where she presented her research with the support of AMI's Scientific Event...
www.the-microbiologist.com
November 29, 2025 at 8:56 AM
@amiposts.bsky.social has published an article covering my travels to Germany to attend the Human Microbiome Conference 2025
A big thank you to AMI for supporting my attendance at the conference with their scientific travel grant!
#EESMicrobiome
www.the-microbiologist.com/careers/scie...
A big thank you to AMI for supporting my attendance at the conference with their scientific travel grant!
#EESMicrobiome
www.the-microbiologist.com/careers/scie...
Reposted by Hannah Trivett
💥CONTAM CALENDAR GIVEAWAY💥
Here's your chance to win a ContamCalendar 2026! 🗓️🍄🦠
Just follow @contamclub.bsky.social and repost this post to enter the competition
Winner will be randomly selected from Bluesky or Twitter on Wednesday @ 6pm UTC
Here's your chance to win a ContamCalendar 2026! 🗓️🍄🦠
Just follow @contamclub.bsky.social and repost this post to enter the competition
Winner will be randomly selected from Bluesky or Twitter on Wednesday @ 6pm UTC
November 24, 2025 at 4:12 PM
💥CONTAM CALENDAR GIVEAWAY💥
Here's your chance to win a ContamCalendar 2026! 🗓️🍄🦠
Just follow @contamclub.bsky.social and repost this post to enter the competition
Winner will be randomly selected from Bluesky or Twitter on Wednesday @ 6pm UTC
Here's your chance to win a ContamCalendar 2026! 🗓️🍄🦠
Just follow @contamclub.bsky.social and repost this post to enter the competition
Winner will be randomly selected from Bluesky or Twitter on Wednesday @ 6pm UTC
Reposted by Hannah Trivett
📢 #BSCSeminar: Integrating data-driven microbiome analysis with ex vivo gut models.
🗣 Mani Arumugam, University of Copenhagen
📆 27 November
➡ bsc.es/44C
@sommalliance.bsky.social @tonigabaldon.bsky.social
🗣 Mani Arumugam, University of Copenhagen
📆 27 November
➡ bsc.es/44C
@sommalliance.bsky.social @tonigabaldon.bsky.social
November 26, 2025 at 9:28 AM
📢 #BSCSeminar: Integrating data-driven microbiome analysis with ex vivo gut models.
🗣 Mani Arumugam, University of Copenhagen
📆 27 November
➡ bsc.es/44C
@sommalliance.bsky.social @tonigabaldon.bsky.social
🗣 Mani Arumugam, University of Copenhagen
📆 27 November
➡ bsc.es/44C
@sommalliance.bsky.social @tonigabaldon.bsky.social
Reposted by Hannah Trivett
New PhD position in my lab at @uniofbath.bsky.social (with both @tweethinking.bsky.social & Dr Bethan Littleford-Colquhoun)!
We're looking for someone keen on bioinformatics and microbiome evolution.
Important info below on eligibility & URSA competition funding👇
www.findaphd.com/phds/project...
We're looking for someone keen on bioinformatics and microbiome evolution.
Important info below on eligibility & URSA competition funding👇
www.findaphd.com/phds/project...
The overlapping microbiome: ecology, function and resilience beyond species boundaries at University of Bath on FindAPhD.com
PhD Project - The overlapping microbiome: ecology, function and resilience beyond species boundaries at University of Bath, listed on FindAPhD.com
www.findaphd.com
November 12, 2025 at 1:20 PM
New PhD position in my lab at @uniofbath.bsky.social (with both @tweethinking.bsky.social & Dr Bethan Littleford-Colquhoun)!
We're looking for someone keen on bioinformatics and microbiome evolution.
Important info below on eligibility & URSA competition funding👇
www.findaphd.com/phds/project...
We're looking for someone keen on bioinformatics and microbiome evolution.
Important info below on eligibility & URSA competition funding👇
www.findaphd.com/phds/project...
Thank you @target-amr.bsky.social for inviting me to share the benefits using #QualitativeReasearch for AMR Genomics and my experience exploring academic and clinical perspectives of infectious disease diagnostics!
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
Using qualitative research to support quantitative research in AMR genomics
YouTube video by TARGetAMR
youtu.be
October 25, 2025 at 1:28 PM
Thank you @target-amr.bsky.social for inviting me to share the benefits using #QualitativeReasearch for AMR Genomics and my experience exploring academic and clinical perspectives of infectious disease diagnostics!
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
If you’re interested to know more, check out the talk below youtu.be/mQ_vwEhFhRM?...
Reposted by Hannah Trivett
⏰ 2 hours to go!
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
October 20, 2025 at 8:59 AM
⏰ 2 hours to go!
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
⌛️Until out Panel discussion on AMR genomics: What social science can do?
🎤 Dr Nchangwi Munung, Dr Jaime Garcia-Iglesias & Dr Hannah Trivett
🌱ECR Gregory McCallum on AMR in hospital sinks
📅Today @ 12pm GMT
🔗Register now: targetamr.org.uk/hdrevents/ta...
Today wraps up an inspiring week in Heidelberg, Germany at @embl.org for the Human Microbiome Conference, where I shared my first #PostDoc project from @halllab.bsky.social
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
September 19, 2025 at 1:14 PM
Today wraps up an inspiring week in Heidelberg, Germany at @embl.org for the Human Microbiome Conference, where I shared my first #PostDoc project from @halllab.bsky.social
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
Thank you to @amiposts.bsky.social for awarding me a travel grant to facilitate attending the conference!
#EESMicrobiome
Reposted by Hannah Trivett
Such an engaged audience at #EESMicrobiome with lots of great questions after my talk!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
🦠🔬 We’re starting #EESMicrobiome Session 3: Early life microbiome – development and impact
🔸Chaired by Tami Lieberman (MIT) & Mani Arumugam (University of Copenhagen)
🎤 First talk:
'Exploring early life microbiome interactions'
by Lindsay Hall @unibirmingham.bsky.social @halllab.bsky.social
🔸Chaired by Tami Lieberman (MIT) & Mani Arumugam (University of Copenhagen)
🎤 First talk:
'Exploring early life microbiome interactions'
by Lindsay Hall @unibirmingham.bsky.social @halllab.bsky.social
September 17, 2025 at 1:37 PM
Such an engaged audience at #EESMicrobiome with lots of great questions after my talk!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work.
Conference has been AMAZING so far!
Reposted by Hannah Trivett
A little tool I've developed: ExpEvoAnalyzer (github.com/samhorsfield...) - a snakemake pipeline that compares isolate paired-read data from an experimental evolution study to a reference isolate, producing functionally-annotated SNPs in a presence/absence matrix.
GitHub - samhorsfield96/ExpEvoAnalyzer: A workflow to analyse experimental evolution data.
A workflow to analyse experimental evolution data. - samhorsfield96/ExpEvoAnalyzer
github.com
September 11, 2025 at 2:16 PM
A little tool I've developed: ExpEvoAnalyzer (github.com/samhorsfield...) - a snakemake pipeline that compares isolate paired-read data from an experimental evolution study to a reference isolate, producing functionally-annotated SNPs in a presence/absence matrix.
Reposted by Hannah Trivett
Reposted by Hannah Trivett
There are half a million cases of invasive non-Typhoidal Salmonella (iNTS) every year and while you might know S. Typhimurim and Enteritidis, you may not have heard of S. Panama 💩 🩸 🧫 💊 Check out our latest in @lancetmicrobe.bsky.social doi.org/10.1016/j.la... and the 🧵 below to find out more 1/n
July 27, 2025 at 8:35 AM
There are half a million cases of invasive non-Typhoidal Salmonella (iNTS) every year and while you might know S. Typhimurim and Enteritidis, you may not have heard of S. Panama 💩 🩸 🧫 💊 Check out our latest in @lancetmicrobe.bsky.social doi.org/10.1016/j.la... and the 🧵 below to find out more 1/n
Reposted by Hannah Trivett
Day 2 of IMI Summer school 2025 kicks off with some funky images from @contamclub.bsky.social and Mathematical modelling of an infectious disease with Rowland Seymour 🦠🦠🤢🤢
July 1, 2025 at 9:27 AM
Day 2 of IMI Summer school 2025 kicks off with some funky images from @contamclub.bsky.social and Mathematical modelling of an infectious disease with Rowland Seymour 🦠🦠🤢🤢
Reposted by Hannah Trivett
Practicing pipetting and making dilutions - great start to IMI Summer school 2025 with @hannahtriv.bsky.social @miribiome.bsky.social @bpettifor.bsky.social
June 30, 2025 at 10:34 AM
Practicing pipetting and making dilutions - great start to IMI Summer school 2025 with @hannahtriv.bsky.social @miribiome.bsky.social @bpettifor.bsky.social