http://orcid.org/0000-0002-0970…
INRAE scientist at MaIAGE.
The influence of environment on bacterial co-abundance in the gut microbiomes of healthy human individuals www.nature.com/articles/s42...
which investigates environmental effects on microbiome interactions, using our previously published tool MANOCCA.
The influence of environment on bacterial co-abundance in the gut microbiomes of healthy human individuals www.nature.com/articles/s42...
which investigates environmental effects on microbiome interactions, using our previously published tool MANOCCA.
microbiomejournal.biomedcentral.com/articles/10....
#metagenomic #science #data #lefrenchgut
@inrae-france.bsky.social @institutpasteur.bsky.social
microbiomejournal.biomedcentral.com/articles/10....
#metagenomic #science #data #lefrenchgut
@inrae-france.bsky.social @institutpasteur.bsky.social
Classifying Convergences in the Light of Horizontal Gene Transfer: Epaktovars and Xenotypes academic.oup.com/mbe/article/...
academic.oup.com/nar/advance-...
academic.oup.com/nar/advance-...
MetaGraph: metagraph.ethz.ch
Code: github.com/ratschlab/me...
MetaGraph: metagraph.ethz.ch
Code: github.com/ratschlab/me...
It was a huge privilege when @shenwei356.bsky.social
joined our group for a year on an @embl.org sabbatical.
While here, he developed a new way of aligning to
millions of bacteria, called LexicMap 1/n
www.nature.com/articles/s41...
It was a huge privilege when @shenwei356.bsky.social
joined our group for a year on an @embl.org sabbatical.
While here, he developed a new way of aligning to
millions of bacteria, called LexicMap 1/n
www.nature.com/articles/s41...
www.biorxiv.org/content/10.1...
github.com/iqbal-lab-or...
www.biorxiv.org/content/10.1...
github.com/iqbal-lab-or...
Nanopore's getting accurate, but
1. Can this lead to better metagenome assemblies?
2. How, algorithmically, to leverage them?
with co-author Max Marin @mgmarin.bsky.social, supervised by Heng Li @lh3lh3.bsky.social
1 / N
Nanopore's getting accurate, but
1. Can this lead to better metagenome assemblies?
2. How, algorithmically, to leverage them?
with co-author Max Marin @mgmarin.bsky.social, supervised by Heng Li @lh3lh3.bsky.social
1 / N
Paper: academic.oup.com/bib/article/...
R package on #Bioconductor: TaxSEA
#RStats #Microbiome
Come say hi, I flew from Australia for this 🤣
Paper: academic.oup.com/bib/article/...
R package on #Bioconductor: TaxSEA
#RStats #Microbiome
Come say hi, I flew from Australia for this 🤣
📄 www.biorxiv.org/content/10.1...
Also check out poster:
B-50 lolalign Sensitive structural alignments by Lasse
B-123 BFVD by Rachel
📄 www.biorxiv.org/content/10.1...
Also check out poster:
B-50 lolalign Sensitive structural alignments by Lasse
B-123 BFVD by Rachel