Giovanni Palla
@giopll.bsky.social
Research Scientist AI/ML @cziscience.bsky.social , PhD @www.helmholtz-munich.de , OSS @scverse.bsky.social
giovannipalla.com
giovannipalla.com
Yesterday, we released a new paper on a novel architecture for single-cell genomics. We call it scLDM to hint at the Latent Diffusion Model paradigm, a generative modeling framework that has been very successful across various domains.
November 7, 2025 at 7:20 PM
Yesterday, we released a new paper on a novel architecture for single-cell genomics. We call it scLDM to hint at the Latent Diffusion Model paradigm, a generative modeling framework that has been very successful across various domains.
Reposted by Giovanni Palla
Excited to see a home for MCP servers in bioinformatics emerge! The community needs a central hub for developing MCP servers for key bioinfo tools. At @scverse.bsky.social we're contributing to this effort - can't wait to share what we're building
BioContextAI is a community hub for agentic biomedical systems - @puellesv.bsky.social @biocontext.ai go.nature.com/3JmqKux
BioContextAI is a community hub for agentic biomedical systems - Nature Biotechnology
Nature Biotechnology - BioContextAI is a community hub for agentic biomedical systems
go.nature.com
November 6, 2025 at 7:28 PM
Excited to see a home for MCP servers in bioinformatics emerge! The community needs a central hub for developing MCP servers for key bioinfo tools. At @scverse.bsky.social we're contributing to this effort - can't wait to share what we're building
Fantastic lineup of panelists to discuss everything agentic coding in bioinformatics, still time to register here:
www.eventbrite.com/e/scverse-co...
www.eventbrite.com/e/scverse-co...
October 3, 2025 at 8:34 PM
Fantastic lineup of panelists to discuss everything agentic coding in bioinformatics, still time to register here:
www.eventbrite.com/e/scverse-co...
www.eventbrite.com/e/scverse-co...
Reposted by Giovanni Palla
Happy to share CellAnnotator, a lightweight Python package to query OpenAI models for initial cell type annotations: github.com/quadbio/cell...
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
GitHub - quadbio/cell-annotator: Automatically annotate cell types, consistently across samples.
Automatically annotate cell types, consistently across samples. - quadbio/cell-annotator
github.com
March 28, 2025 at 4:53 PM
Happy to share CellAnnotator, a lightweight Python package to query OpenAI models for initial cell type annotations: github.com/quadbio/cell...
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
Reposted by Giovanni Palla
Our paper benchmarking feature selection for scRNA-seq integration and reference usage is out now www.nature.com/articles/s41...!
Keep reading for more about how we did the study and what we found out 🧵 👇
1/16
Keep reading for more about how we did the study and what we found out 🧵 👇
1/16
https://www.nature.com/articles/s41592-025-02624-3🎉
March 18, 2025 at 3:40 PM
Our paper benchmarking feature selection for scRNA-seq integration and reference usage is out now www.nature.com/articles/s41...!
Keep reading for more about how we did the study and what we found out 🧵 👇
1/16
Keep reading for more about how we did the study and what we found out 🧵 👇
1/16
Reposted by Giovanni Palla
A pre-trained SCVI model of our Tahoe-100M cell atlas is now available as a HubModel! It can be used for gene expression visualization, differential expression, or cell clustering. Available at Hugging Face with instructions on how to load it (see thread)
March 6, 2025 at 11:01 PM
A pre-trained SCVI model of our Tahoe-100M cell atlas is now available as a HubModel! It can be used for gene expression visualization, differential expression, or cell clustering. Available at Hugging Face with instructions on how to load it (see thread)
🚨 Deadline Approaching! 🚨
Only 3 days left to submit your tiny or full workshop papers! 📝✨ Don’t miss out—deadline is February 12, 2025, at 11:59 PM AoE.
👉 Submit your work here: openreview.net/group?id=ICL...
Only 3 days left to submit your tiny or full workshop papers! 📝✨ Don’t miss out—deadline is February 12, 2025, at 11:59 PM AoE.
👉 Submit your work here: openreview.net/group?id=ICL...
We have a date! 📅 #LMRL2025 is coming to 🇸🇬 on 28th April 2025 @iclr-conf.bsky.social to bring life into AI 🌱😜
Biological of biomedical, any bio domain helping to bring *meaningfulness* into the world should be represented at this workshop 🌏
It's not late until 12th Feb AoE to submit! 📝
Biological of biomedical, any bio domain helping to bring *meaningfulness* into the world should be represented at this workshop 🌏
It's not late until 12th Feb AoE to submit! 📝
February 10, 2025 at 4:35 AM
🚨 Deadline Approaching! 🚨
Only 3 days left to submit your tiny or full workshop papers! 📝✨ Don’t miss out—deadline is February 12, 2025, at 11:59 PM AoE.
👉 Submit your work here: openreview.net/group?id=ICL...
Only 3 days left to submit your tiny or full workshop papers! 📝✨ Don’t miss out—deadline is February 12, 2025, at 11:59 PM AoE.
👉 Submit your work here: openreview.net/group?id=ICL...
Reposted by Giovanni Palla
We have a date! 📅 #LMRL2025 is coming to 🇸🇬 on 28th April 2025 @iclr-conf.bsky.social to bring life into AI 🌱😜
Biological of biomedical, any bio domain helping to bring *meaningfulness* into the world should be represented at this workshop 🌏
It's not late until 12th Feb AoE to submit! 📝
Biological of biomedical, any bio domain helping to bring *meaningfulness* into the world should be represented at this workshop 🌏
It's not late until 12th Feb AoE to submit! 📝
February 6, 2025 at 12:40 PM
We have a date! 📅 #LMRL2025 is coming to 🇸🇬 on 28th April 2025 @iclr-conf.bsky.social to bring life into AI 🌱😜
Biological of biomedical, any bio domain helping to bring *meaningfulness* into the world should be represented at this workshop 🌏
It's not late until 12th Feb AoE to submit! 📝
Biological of biomedical, any bio domain helping to bring *meaningfulness* into the world should be represented at this workshop 🌏
It's not late until 12th Feb AoE to submit! 📝
Reposted by Giovanni Palla
