@mariuslange.bsky.social
Happy to share CellAnnotator, a lightweight Python package to query OpenAI models for initial cell type annotations: github.com/quadbio/cell...
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
GitHub - quadbio/cell-annotator: Automatically annotate cell types, consistently across samples.
Automatically annotate cell types, consistently across samples. - quadbio/cell-annotator
github.com
March 28, 2025 at 4:53 PM
Happy to share CellAnnotator, a lightweight Python package to query OpenAI models for initial cell type annotations: github.com/quadbio/cell...
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.
Excited to see moscot out in Nature! This was a great collaborative effort, thanks to everyone involved for making this project a success!
Good to see moscot-tools.org published in @nature.com ! We made existing Optimal Transport (OT) applications in single-cell genomics scalable and multimodal, added a novel spatiotemporal trajectory inference method and found exciting new biology in the pancreas! tinyurl.com/33zuwsep
Mapping cells through time and space with moscot - Nature
Moscot is an optimal transport approach that overcomes current limitations of similar methods to enable multimodal, scalable and consistent single-cell analyses of datasets across spatial and temporal...
tinyurl.com
January 23, 2025 at 11:20 AM
Excited to see moscot out in Nature! This was a great collaborative effort, thanks to everyone involved for making this project a success!
On my first day of joining bluesky, our CellRank project is officially awarded the Helmholtz Software award for scientific originality! This is a great honor for the CellRank dev team, including Philipp Weiler, Michal Klein, and myself. Check out cellrank.org to learn more.
November 28, 2024 at 8:29 AM
On my first day of joining bluesky, our CellRank project is officially awarded the Helmholtz Software award for scientific originality! This is a great honor for the CellRank dev team, including Philipp Weiler, Michal Klein, and myself. Check out cellrank.org to learn more.