@mariuslange.bsky.social
Cell type annotations derived with CellAnnotator can serve as an initial step in a labeling pipeline. For example, coarse labels can be used to guide semi-supervised models like scPoli or scANVI, or they can be used to compare different integration strategies with scIB metrics.
March 28, 2025 at 4:53 PM
Cell type annotations derived with CellAnnotator can serve as an initial step in a labeling pipeline. For example, coarse labels can be used to guide semi-supervised models like scPoli or scANVI, or they can be used to compare different integration strategies with scIB metrics.
CellAnnotator computes marker genes per cluster and queries OpenAI models for corresponding annotations. Optionally, you can provide a list of expected cell types and their markers to anchor the model. We include an additional step to harmonize annotations across samples of more complex datasets.
March 28, 2025 at 4:53 PM
CellAnnotator computes marker genes per cluster and queries OpenAI models for corresponding annotations. Optionally, you can provide a list of expected cell types and their markers to anchor the model. We include an additional step to harmonize annotations across samples of more complex datasets.