Elana Fertig, PhD
@fertiglab.bsky.social
Inter-dimensional cancer biologist. Director of the @genomescience.bsky.social at @umbaltimore.bsky.social.
Pinned
Elana Fertig, PhD
@fertiglab.bsky.social
· Nov 15
2024 News - Leading Computational Scientist and Oncology Researcher Elana Fertig, PhD, Appointed as New Director of the Institute for Genome Sciences at the University of Maryland School of Medicine ...
www.medschool.umaryland.edu
Excited to announce my move to a new role as Director of @genomescience.bsky.social at University of Maryland starting in Dec! www.medschool.umaryland.edu/news/2024/le...
Reposted by Elana Fertig, PhD
Major PhysiCell paper in Cell using a new, intuitive model grammar to create complex multicellular systems models with "plain language" cell hypotheses! 🧪
@cellpress.bsky.social @cp-cell.bsky.social @mathcancer.bsky.social @fertiglab.bsky.social #mathonco #mathbio #abm #opensource
@cellpress.bsky.social @cp-cell.bsky.social @mathcancer.bsky.social @fertiglab.bsky.social #mathonco #mathbio #abm #opensource
Really excited to share our new @cellpress.bsky.social Cell paper with @fertiglab.bsky.social and colleagues. 1/n
www.cell.com/cell/fulltex...
@jktgfoundation.bsky.social @itcrtraining.bsky.social @smbmathbiology.bsky.social #mathbio #mathonco @mathonco.bsky.social @deniswirtz.bsky.social
www.cell.com/cell/fulltex...
@jktgfoundation.bsky.social @itcrtraining.bsky.social @smbmathbiology.bsky.social #mathbio #mathonco @mathonco.bsky.social @deniswirtz.bsky.social
Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories
We developed a plain text modeling language—a cell behavior hypothesis grammar—to
easily build virtual cell models and connect them to data, helping scientists to unlock
the hidden dynamics of tissues...
www.cell.com
July 29, 2025 at 4:02 PM
Major PhysiCell paper in Cell using a new, intuitive model grammar to create complex multicellular systems models with "plain language" cell hypotheses! 🧪
@cellpress.bsky.social @cp-cell.bsky.social @mathcancer.bsky.social @fertiglab.bsky.social #mathonco #mathbio #abm #opensource
@cellpress.bsky.social @cp-cell.bsky.social @mathcancer.bsky.social @fertiglab.bsky.social #mathonco #mathbio #abm #opensource
Reposted by Elana Fertig, PhD
Excited for this @cp-cell.bsky.social article co-led by @fertiglab.bsky.social and Genevieve Stein-O'Brien, on creating a plain language "grammar" to easily write simulation models as virtual laboratories for complex systems like cancer.
Fully open access and open source! 🧪 #mathonco #mathbio
Fully open access and open source! 🧪 #mathonco #mathbio
Now online! Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories
Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories
We developed a plain text modeling language—a cell behavior hypothesis grammar—to easily build virtual cell models and connect them to data, helping scientists to unlock the hidden dynamics of tissues. We provide examples showing how to use them in virtual experiments exploring how cancer responds to the cells in its environment and how the brain forms layers in development.
dlvr.it
July 29, 2025 at 1:06 AM
Excited for this @cp-cell.bsky.social article co-led by @fertiglab.bsky.social and Genevieve Stein-O'Brien, on creating a plain language "grammar" to easily write simulation models as virtual laboratories for complex systems like cancer.
Fully open access and open source! 🧪 #mathonco #mathbio
Fully open access and open source! 🧪 #mathonco #mathbio
Reposted by Elana Fertig, PhD
Really excited to share our new @cellpress.bsky.social Cell paper with @fertiglab.bsky.social and colleagues. 1/n
www.cell.com/cell/fulltex...
@jktgfoundation.bsky.social @itcrtraining.bsky.social @smbmathbiology.bsky.social #mathbio #mathonco @mathonco.bsky.social @deniswirtz.bsky.social
www.cell.com/cell/fulltex...
@jktgfoundation.bsky.social @itcrtraining.bsky.social @smbmathbiology.bsky.social #mathbio #mathonco @mathonco.bsky.social @deniswirtz.bsky.social
Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories
We developed a plain text modeling language—a cell behavior hypothesis grammar—to
easily build virtual cell models and connect them to data, helping scientists to unlock
the hidden dynamics of tissues...
www.cell.com
July 28, 2025 at 2:20 PM
Really excited to share our new @cellpress.bsky.social Cell paper with @fertiglab.bsky.social and colleagues. 1/n
www.cell.com/cell/fulltex...
@jktgfoundation.bsky.social @itcrtraining.bsky.social @smbmathbiology.bsky.social #mathbio #mathonco @mathonco.bsky.social @deniswirtz.bsky.social
www.cell.com/cell/fulltex...
@jktgfoundation.bsky.social @itcrtraining.bsky.social @smbmathbiology.bsky.social #mathbio #mathonco @mathonco.bsky.social @deniswirtz.bsky.social
Reposted by Elana Fertig, PhD
#AACR25 #AACR2025 @theaacr.bsky.social following the plenary session, at 10:15 in S105, we will showcase possible means to preventing cancer onset by intercepting its #TME
@fertiglab.bsky.social
#BarbaraVanderhyden and yours truly
@fertiglab.bsky.social
#BarbaraVanderhyden and yours truly
April 29, 2025 at 1:34 PM
#AACR25 #AACR2025 @theaacr.bsky.social following the plenary session, at 10:15 in S105, we will showcase possible means to preventing cancer onset by intercepting its #TME
@fertiglab.bsky.social
#BarbaraVanderhyden and yours truly
@fertiglab.bsky.social
#BarbaraVanderhyden and yours truly
Reposted by Elana Fertig, PhD
Researchers at UMSOM are pioneering a new approach to precision medicine by combining AI with mathematical modeling.🌟🔬
@fertiglab.bsky.social and @genomescience.bsky.social
colleagues share the importance of ethically sharing health data to ensure reproducible and trustworthy scientific outcomes.
@fertiglab.bsky.social and @genomescience.bsky.social
colleagues share the importance of ethically sharing health data to ensure reproducible and trustworthy scientific outcomes.
2025 News - While AI Could Be the Game Changer in Predicting Health Outcomes It Should Not Be the Only Method | University of Maryland School of Medicine
bit.ly
April 25, 2025 at 10:07 PM
Researchers at UMSOM are pioneering a new approach to precision medicine by combining AI with mathematical modeling.🌟🔬
@fertiglab.bsky.social and @genomescience.bsky.social
colleagues share the importance of ethically sharing health data to ensure reproducible and trustworthy scientific outcomes.
@fertiglab.bsky.social and @genomescience.bsky.social
colleagues share the importance of ethically sharing health data to ensure reproducible and trustworthy scientific outcomes.
Reposted by Elana Fertig, PhD
Join our lab to study transcriptional regulation in mouse germ cells and embryonic stem cells at @haskoliislands.bsky.social in beautiful Reykjavík!
Apply here: tinyurl.com/34y6jcrd
#epigenetics #TranscriptionFactors #transcriptomics #stemCells #pluripotency
Apply here: tinyurl.com/34y6jcrd
#epigenetics #TranscriptionFactors #transcriptomics #stemCells #pluripotency
April 22, 2025 at 5:24 PM
Join our lab to study transcriptional regulation in mouse germ cells and embryonic stem cells at @haskoliislands.bsky.social in beautiful Reykjavík!
Apply here: tinyurl.com/34y6jcrd
#epigenetics #TranscriptionFactors #transcriptomics #stemCells #pluripotency
Apply here: tinyurl.com/34y6jcrd
#epigenetics #TranscriptionFactors #transcriptomics #stemCells #pluripotency
Reposted by Elana Fertig, PhD
Call it what it is: a race/ gender purge.
Thirty-eight of 43 experts cut last month from the boards that review the science and research that happens in laboratories at the National Institutes of Health are female, Black or Hispanic, according to an analysis by the chairs of a dozen of the boards.
Women, minorities fired in purge of NIH science review boards
Scientists, with expertise in fields that include mental health, cancer and infectious disease, typically serve five-year terms and were not given a reason for their dismissal.
www.washingtonpost.com
April 17, 2025 at 10:51 AM
Call it what it is: a race/ gender purge.
Reposted by Elana Fertig, PhD
Virtual cells for predictive immunotherapy - @fertiglab.bsky.social @genomescience.bsky.social go.nature.com/4jfqM3Y
April 16, 2025 at 3:27 PM
Virtual cells for predictive immunotherapy - @fertiglab.bsky.social @genomescience.bsky.social go.nature.com/4jfqM3Y
Proud of our new perspective describing the role of mathematical biology for immunotherapy www.nature.com/articles/s41... @natbiotech.nature.com
Virtual cells for predictive immunotherapy - Nature Biotechnology
Synergizing advances in artificial intelligence with mathematical modeling will improve our ability to computationally predict immunotherapy outcomes.
www.nature.com
April 15, 2025 at 2:17 AM
Proud of our new perspective describing the role of mathematical biology for immunotherapy www.nature.com/articles/s41... @natbiotech.nature.com
Any mamma of a kid with autism knows exactly where a quick claim of its cause / blame will go…..
Science does not work like this. The only way you can set a timeline is if you have rigged the results in advance.
April 11, 2025 at 11:53 AM
Any mamma of a kid with autism knows exactly where a quick claim of its cause / blame will go…..
Omg!!!! So proud of my baby cousin!!!!!!
No sinking feeling for Titanique tonight. The show currently running at the Criterion Theatre, has won the award for Best New Entertainment or Comedy Play! @olivierawards.bsky.social
April 6, 2025 at 7:57 PM
Omg!!!! So proud of my baby cousin!!!!!!
Reposted by Elana Fertig, PhD
Unexpected treat today @moffittnews.bsky.social Innovator's of Tomorrow symposium with Jeanette Johnson, working with @fertiglab.bsky.social and developing on @physicell.bsky.social to create an #ABM for #pancreatic #cancer forecasting
April 4, 2025 at 3:17 PM
Unexpected treat today @moffittnews.bsky.social Innovator's of Tomorrow symposium with Jeanette Johnson, working with @fertiglab.bsky.social and developing on @physicell.bsky.social to create an #ABM for #pancreatic #cancer forecasting
Reposted by Elana Fertig, PhD
as I tell my Genetics class every year, this breakthrough is based on 70 years of NIH-funded, basic research, commercialized by biotech
bsky.app/profile/need...
bsky.app/profile/need...
March 15, 2025 at 6:49 PM
as I tell my Genetics class every year, this breakthrough is based on 70 years of NIH-funded, basic research, commercialized by biotech
bsky.app/profile/need...
bsky.app/profile/need...
Homecoming seminar @ummedschool.bsky.social
March 10, 2025 at 11:35 PM
Homecoming seminar @ummedschool.bsky.social
Reposted by Elana Fertig, PhD
Cancer knows no borders, and setbacks in one part of the world can have lasting consequences for #patients everywhere
The #EACR, and all co-signing national #cancer societies & foundations, stand in solidarity and offer our full support to our friends and colleagues in the US
#StandUpForScience 🧪
The #EACR, and all co-signing national #cancer societies & foundations, stand in solidarity and offer our full support to our friends and colleagues in the US
#StandUpForScience 🧪
March 10, 2025 at 12:06 PM
Cancer knows no borders, and setbacks in one part of the world can have lasting consequences for #patients everywhere
The #EACR, and all co-signing national #cancer societies & foundations, stand in solidarity and offer our full support to our friends and colleagues in the US
#StandUpForScience 🧪
The #EACR, and all co-signing national #cancer societies & foundations, stand in solidarity and offer our full support to our friends and colleagues in the US
#StandUpForScience 🧪
Reposted by Elana Fertig, PhD
Cleveland on the Ukraine invasion anniversary
March 1, 2025 at 12:59 AM
Cleveland on the Ukraine invasion anniversary
Reposted by Elana Fertig, PhD
I am ashamed to be an American today.
I stand with Ukraine.
I stand with Canada.
I stand with Panama.
I stand with Greenland.
I stand with Europe.
I stand with Ukraine.
I stand with Canada.
I stand with Panama.
I stand with Greenland.
I stand with Europe.
February 28, 2025 at 7:07 PM
I am ashamed to be an American today.
I stand with Ukraine.
I stand with Canada.
I stand with Panama.
I stand with Greenland.
I stand with Europe.
I stand with Ukraine.
I stand with Canada.
I stand with Panama.
I stand with Greenland.
I stand with Europe.
My kids thoughts and our hearts to everyone at NOAA @benfertig.bsky.social
March 1, 2025 at 12:17 AM
My kids thoughts and our hearts to everyone at NOAA @benfertig.bsky.social
Reposted by Elana Fertig, PhD
🧬 We Want Your Feedback! 🧬\
Do you use variant annotation software? We’re gathering insights from the genomics community to improve OpenCRAVAT and understand what features matter most to you.💡 Take this quick survey (it takes less than 2 minutes!): https://shorturl.at/iOvMt
Do you use variant annotation software? We’re gathering insights from the genomics community to improve OpenCRAVAT and understand what features matter most to you.💡 Take this quick survey (it takes less than 2 minutes!): https://shorturl.at/iOvMt
February 22, 2025 at 10:53 PM
🧬 We Want Your Feedback! 🧬\
Do you use variant annotation software? We’re gathering insights from the genomics community to improve OpenCRAVAT and understand what features matter most to you.💡 Take this quick survey (it takes less than 2 minutes!): https://shorturl.at/iOvMt
Do you use variant annotation software? We’re gathering insights from the genomics community to improve OpenCRAVAT and understand what features matter most to you.💡 Take this quick survey (it takes less than 2 minutes!): https://shorturl.at/iOvMt
Heatbreaking. Absolutely heartbreaking
All probationary federal employees at NOAA’s EMC that’s responsible for keeping all US weather model systems running have been fired with 1 hours notice. And that includes me and colleagues. We will not go quietly because we care about the NOAA mission to protect the public.
February 28, 2025 at 2:35 AM
Heatbreaking. Absolutely heartbreaking
Reposted by Elana Fertig, PhD
We asked J. Moffitt, M. Li, Q., K. Kanemaru, S. Teichmann, D. Dar, S. Itzkovitz, R. Vento-Tormo, @ltkagohara.bsky.social @itaiyanai.bsky.social @fertiglab.bsky.social @fabiantheis.bsky.social about bottlenecks facing Spatial Transcriptomics www.cell.com/cell-systems/abstract/S2405-4712(25)00033-X
What is the main bottleneck in deriving biological understanding from spatial transcriptomic profiling?
Image-based approaches to single-cell transcriptomics offer the exciting ability to
directly image gene expression at the transcriptome scale within intact tissue slices,
defining, discovering, and ma...
www.cell.com
February 26, 2025 at 3:58 PM
We asked J. Moffitt, M. Li, Q., K. Kanemaru, S. Teichmann, D. Dar, S. Itzkovitz, R. Vento-Tormo, @ltkagohara.bsky.social @itaiyanai.bsky.social @fertiglab.bsky.social @fabiantheis.bsky.social about bottlenecks facing Spatial Transcriptomics www.cell.com/cell-systems/abstract/S2405-4712(25)00033-X
Reposted by Elana Fertig, PhD
Karchin Lab at Johns Hopkins is excited to announce a postdoctoral position focused on developing innovative methods in computational immuno-oncology. Great opportunity if you are passionate about advancing cancer immunotherapy and bioinformatics. Learn more/apply: karchinlab.org/join-us/
Join us – Karchin Lab
tinyurl.com
February 25, 2025 at 5:35 PM
Karchin Lab at Johns Hopkins is excited to announce a postdoctoral position focused on developing innovative methods in computational immuno-oncology. Great opportunity if you are passionate about advancing cancer immunotherapy and bioinformatics. Learn more/apply: karchinlab.org/join-us/
Reposted by Elana Fertig, PhD
Contributions from: Jeffrey Moffitt, @drmingyaoli.bsky.social, Qing Nie, Kazumasa Kanemaru, Sarah Teichmann, Daniel Dar, @ltkagohara.bsky.social, Shalev Itzkovitz, Roser Vento-Tormo, @fertiglab.bsky.social, @fabiantheis.bsky.social
February 23, 2025 at 5:39 PM
Contributions from: Jeffrey Moffitt, @drmingyaoli.bsky.social, Qing Nie, Kazumasa Kanemaru, Sarah Teichmann, Daniel Dar, @ltkagohara.bsky.social, Shalev Itzkovitz, Roser Vento-Tormo, @fertiglab.bsky.social, @fabiantheis.bsky.social