rachelkarchin.bsky.social
@rachelkarchin.bsky.social
Excited to share new joint publication with the Tychele Turner lab at WashU now published in Cell Genomics! We do a proteome-wide assessment of differential missense variant clustering in neurodevelopmental disorders and cancers and find some interesting differences!

tinyurl.com/2p9j559n
Proteome-wide assessment of differential missense variant clustering in neurodevelopmental disorders and cancer - PubMed
Prior studies examining genomic variants suggest that some proteins contribute to both neurodevelopmental disorders (NDDs) and cancer. While there are several potential etiologies, here, we hypothesiz...
pubmed.ncbi.nlm.nih.gov
March 15, 2025 at 7:42 PM
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February 28, 2025 at 6:12 PM
Karchin Lab at Johns Hopkins is excited to announce a postdoctoral position focused on developing innovative methods in computational immuno-oncology. Great opportunity if you are passionate about advancing cancer immunotherapy and bioinformatics. Learn more/apply: karchinlab.org/join-us/
Join us – Karchin Lab
tinyurl.com
February 25, 2025 at 5:35 PM
The Karchin Lab at Johns Hopkins is excited to announce a postdoctoral position focused on developing innovative methods in computational immuno-oncology. A great opportunity for researchers passionate about advancing cancer immunotherapy and bioinformatics. Learn more/apply: tinyurl.com/25ehczwb
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February 25, 2025 at 5:33 PM
The Karchin Lab at Johns Hopkins is excited to announce a postdoctoral position focused on developing innovative methods in computational immuno-oncology. A great opportunity for researchers passionate about advancing cancer immunotherapy and bioinformatics. Learn more/apply here: lnkd.in/ehEwbKPn
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lnkd.in
February 25, 2025 at 4:55 PM
Check out the new preprint from karchinlab.org tinyurl.com/vxm7b6n6 about a new computational method to estimate the cellular prevalence of somatic structural variants in tumors from bulk DNAseq. #genomics #cancer #bioinformatics #tumor_evolution @hopkinsengineer.bsky.social
SVCFit: Inferring structural variant cellular fraction in tumors
Many tumors evolve through cellular mutation and selection, where subpopulations of cells (subclones) with shared ancestry compete for dominance. Introduction of next generation sequencing enables sub...
tinyurl.com
February 6, 2025 at 8:26 PM