Aakash Grover
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aakashg20.bsky.social
Aakash Grover
@aakashg20.bsky.social
Grad Student - University of Pittsburgh
Arndt Lab - www.karenarndtlab.com
UG - Shiv Nadar University
Epigenetics and Gene Expression
(He/Him/His)
🏳️‍🌈
Reposted by Aakash Grover
Scientist on Friday, superfan on Sunday. Balance. 😌
November 16, 2025 at 4:30 PM
Delhi Crime Season 3🤯
November 16, 2025 at 10:16 PM
Reposted by Aakash Grover
Beautiful review from J. Rudolph on Histone PARylation factor 1: a review of its role in the DNA damage response url: academic.oup.com/nar/article/...
Histone PARylation factor 1: a review of its role in the DNA damage response
Abstract. Although poly-(ADP ribose) polymerase 1 (PARP1) and PARylation of histones have been known for over 50 years and have been successfully targeted
academic.oup.com
November 11, 2025 at 2:49 PM
Dead Poets Society🤌🥲
November 9, 2025 at 6:12 AM
Reposted by Aakash Grover
I love AlphaFold—but please include PAE (Predicted Aligned Error) plots for every “interaction.” Pretty PDBs ≠ proof. If the PAE doesn’t show an interface, it ain’t one. Show the plots. Structural biology's reputation is on the line.
October 24, 2025 at 5:44 PM
Reposted by Aakash Grover
Just submitted this a few hours ago. We ❤️ biorxiv. This is work from my student Payal Arora who will defend her thesis very soon!
Genetic dissection of transcription start site selection by RNA polymerase II in Saccharomyces cerevisiae https://www.biorxiv.org/content/10.1101/2025.10.24.684399v1
October 24, 2025 at 9:24 PM
Reposted by Aakash Grover
I don’t think this is a controversial opinion but …

Indian style mutter-paneer definitely deserves the Nobel peas prize this year

www.indianhealthyrecipes.com/matar-paneer...
October 10, 2025 at 4:55 AM
Reposted by Aakash Grover
We have added additional functionalities including a collapsible protein pane and zoom scrolling. domaindesigner.farnunglab.com
New week, new tool: Find our Protein Domain Designer tool to generate publication-ready protein domain diagrams here: domaindesigner.farnunglab.com
October 4, 2025 at 7:19 PM
Reposted by Aakash Grover
New week, new tool: Find our Protein Domain Designer tool to generate publication-ready protein domain diagrams here: domaindesigner.farnunglab.com
September 29, 2025 at 3:01 PM
Reposted by Aakash Grover
This is a fascinating paper that particular types of RNA binding proteins with IDRs that target nuclear speckles also can recruit their own RNAs to nuclear speckles as a negative feedback mechanism for condensation the authors call "interstasis" www.nature.com/articles/s41...
Collective homeostasis of condensation-prone proteins via their mRNAs - Nature
The authors discover a homeostatic process termed interstasis, in which an increased concentration of proteins within RNA–protein condensates induces the sequestration of their own mRNAs.
www.nature.com
September 25, 2025 at 8:24 PM
Reposted by Aakash Grover
This Wednesday at #FragileNucleosome seminar, we are excited to host Ali Wilkening and @schvartzman.bsky.social to tell us about amazing work they are doing!
Register here for upcoming session and the entire series:
us06web.zoom.us/webinar/regi...
September 22, 2025 at 7:06 AM
Reposted by Aakash Grover
New preprint is up, led by former postdoc Braulio Bonilla.
We know these remodelers regulate nucleosome positions and occupancy, but do they have a role in regulating higher order chromatin structure? We take a peek for BAF and INO80C.
www.biorxiv.org/content/10.1...
esBAF and INO80C fine-tune subcompartments and differentially regulate enhancer-promoter interactions
The genome is compacted in the nucleus through a hierarchical chromatin organization, ranging from chromosome territories to compartments, topologically associating domains (TADs), and individual nucl...
www.biorxiv.org
September 18, 2025 at 3:00 PM
Reposted by Aakash Grover
Fantastic preprint from my colleague at Pitt. Was presented at recent CSH meeting #moet2025 #moet
The Glc7/PP1 phosphatase triggers Paf1C dissociation from RNA polymerase II to enable transcription termination https://www.biorxiv.org/content/10.1101/2025.09.03.674035v1
September 3, 2025 at 9:23 PM
Had the most amazing time at Cold Spring Harbor Laboratory! #moet2025
September 2, 2025 at 12:24 AM
Reposted by Aakash Grover
We're super excited to announce the entire lineup for the Fall season of Fragile Nucleosome Seminars, starting on Sept 10th at 1200 EDT / 1600 UTC with @gracebower.bsky.social and @creminslab.bsky.social!

register here for the entire series: us06web.zoom.us/webinar/regi...
September 1, 2025 at 2:59 PM
Reposted by Aakash Grover
Our collaborative paper with the Arndt lab is out today: doi.org/10.1093/nar/... (originally bioRxiv: www.biorxiv.org/content/10.1...). Here we asked the question of how CHD1 localizes to chromatin.
A direct interaction between the Chd1 CHCT domain and Rtf1 controls Chd1 distribution and nucleosome positioning on active genes
Abstract. The nucleosome remodeler Chd1 is required for the re-establishment of nucleosome positioning in the wake of transcription elongation by RNA Polym
doi.org
August 28, 2025 at 11:07 PM
Reposted by Aakash Grover
🧬 Transcription elongation by RNA polymerase II relies on a web of elongation factors. Our new work shows how IWS1 acts as a modular scaffold to stabilize & stimulate elongation. Fantastic work by Della Syau! www.biorxiv.org/content/10.1...
August 29, 2025 at 10:14 AM
Reposted by Aakash Grover
Final version of Bingbing Duan’s main thesis work is out now now in Nature Communications @natureportfolio.nature.com www.nature.com/articles/s41... I’m so pleased with this study that we’ve been working on for so long #epistasis #transcription #geneexpression 1/
Widespread epistasis shapes RNA polymerase II active site function and evolution - Nature Communications
The active site of RNA Polymerase II is highly conserved. Here the authors show that mutations can propagate effects across the enzyme and alter genetic behavior of distal residues, demonstrating plas...
www.nature.com
August 28, 2025 at 1:33 AM
Reposted by Aakash Grover
To all post-docs: The Genome Biology dept ‪@embl.org
has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Group Leader - Genome Biology Unit
Are you ready to lead groundbreaking research in Genome Biology? Join us at EMBL! We are seeking a motivated scientist to lead an independent research group addressing exciting and original biological...
embl.wd103.myworkdayjobs.com
July 30, 2025 at 1:41 PM
Reposted by Aakash Grover
Two shy dinos caught on the kiss cam! 📸
July 26, 2025 at 3:26 PM
Reposted by Aakash Grover
I am pleased to announce Reactor—the complex formation calculator for multi-component protein complex formation experiments. Developed by the Farnung Lab @harvardmed.bsky.social.
reactor-farnunglab.pythonanywhere.com 1/n
Reactor - The complex formation calculator
reactor-farnunglab.pythonanywhere.com
July 22, 2025 at 1:13 PM
Reposted by Aakash Grover
New paper:
More than 2700 human 3′UTRs are highly conserved. These 3′UTRs are essential components in mRNA templates, as their deletion decreases protein activity without changing protein abundance. Highly conserved 3′UTRs help the folding of proteins with long IDRs.

www.biorxiv.org/content/10.1...
mRNA 3′UTRs chaperone intrinsically disordered regions to control protein activity
More than 2,700 human mRNA 3′UTRs have hundreds of highly conserved (HC) nucleotides, but their biological roles are unclear. Here, we show that mRNAs with HC 3′UTRs mostly encode proteins with long intrinsically disordered regions (IDRs), including MYC, UTX, and JMJD3. These proteins are only fully active when translated from mRNA templates that include their 3′UTRs, raising the possibility of functional interactions between 3′UTRs and IDRs. Rather than affecting protein abundance or localization, we find that HC 3′UTRs control transcriptional or histone demethylase activity through co-translationally determined protein oligomerization states that are kinetically stable. 3′UTR-dependent changes in protein folding require mRNA-IDR interactions, suggesting that mRNAs act as IDR chaperones. These mRNAs are multivalent, a biophysical RNA feature that enables their translation in network-like condensates, which provide favorable folding environments for proteins with long IDRs. These data indicate that the coding sequence is insufficient for the biogenesis of biologically active conformations of IDR-containing proteins and that RNA can catalyze protein folding. ### Competing Interest Statement The authors have declared no competing interest. Pershing Square Foundation, https://ror.org/04tce9s05 G. Harold & Leila Y. Mathers Foundation National Institutes of Health, DP1GM123454, R35GM144046 Memorial Sloan Kettering Cancer Center, https://ror.org/02yrq0923, P30 CA008748
www.biorxiv.org
July 7, 2025 at 2:28 PM
Reposted by Aakash Grover
It should be free to apply to graduate school
Letter to the Editor
www.nature.com
July 3, 2025 at 10:32 PM