Yingying Cao
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yingyingcao.bsky.social
Yingying Cao
@yingyingcao.bsky.social
Postdoc at NIH/NCI | Excited about developing data-integration and artificial intelligence frameworks to dissect mechanisms of immune regulation, with emphasis on cancer and viral infection contexts | 👩🏻‍💻 views are my own
Reposted by Yingying Cao
We will have our next community meeting on Tuesday, 2025-09-30 at 18:00 CEST!
Ziqian Zheng will be presenting on Spotiphy, a tool that enables single-cell spatial whole transcriptomics via generative modeling.
(Zoom registration link and more information in thread!)
🧵
September 25, 2025 at 3:02 PM
Reposted by Yingying Cao
New preprint: A big headache for sequence models is to predict cross-person variability of RNA levels from DNA in zero-shot genes. Our gLM2X-Tower shows the problem remains unsolved, incl Evo2 & AlphaGenome. However, few-shot setting is promising & can be a new focus.
www.biorxiv.org/content/10.1...
Assessing large-scale genomic language models in predicting personal gene expression: promises and limitations
Large-scale genomic language models (gLMs) hold promise for modeling gene regulation, yet their ability to predict personal gene expression remains largely unexplored. We developed a framework, gLM2X-...
www.biorxiv.org
July 21, 2025 at 2:23 AM