vanhungbui.bsky.social
@vanhungbui.bsky.social
Reposted
New paper is online! We used single cell RNA-seq & phylogenetics to identify 2 additional cell type specific TFs that control late-stage vinca alkaloid biosynthesis. The key insights originated from Camptotheca, another species that produces alkaloids. doi.org/10.1111/nph.... #PlantScience #SecMet
November 10, 2025 at 1:29 PM
Reposted
Excited to see our paper online! We combined scMS and scRNA-seq from the same plant cells 🌱 — a step toward true single-cell multi-omics in plants.
Overview 👇
October 27, 2025 at 6:32 PM
Congratulations @mykang.bsky.social and Hai Anh Vu 🥳
October 24, 2025 at 11:32 PM
My first PhD paper is out today!
Huge thanks to Dr. Thuy Dang (UBC), Dr. Robin Buell (UGA), and @chenxinli2.bsky.social (MSU) for your guidance and support!
Special thanks to Li, for his mentorship in single-cell analysis and bioinformatics.
Our new short article is online at Plant Biotech J (onlinelibrary.wiley.com/doi/10.1111/...)!

"Single Cell Multi-Omics Reveals Rare Biosynthetic Cell Types in the Medicinal Tree Camptotheca acuminata"

Product of an NSF-EAGER award that I was co-PI from 2023-2025 (www.nsf.gov/awardsearch/...).
October 5, 2025 at 3:49 PM
Reposted
Very exciting to finally see our iridoid cyclase ICYC online @natplants.nature.com!
A joined effort with Robin Buell’s lab with Josh Wood generating snRNA-seq, and my student Chloée Tymen performing the initial experiment.
#natprod
#PlantScience
@mpi-ce.bsky.social
www.nature.com/articles/s41...
Discovery of iridoid cyclase completes the iridoid pathway in asterids - Nature Plants
Iridoids are terpenoid metabolites found in thousands of plants. Using single-cell transcriptomics, the authors discovered an unexpected enzyme that has been neofunctionalized to catalyse the cyclization required to form the iridoid scaffold.
www.nature.com
October 3, 2025 at 9:39 AM
Reposted
🤩🤩🤩
New week, new tool: Find our Protein Domain Designer tool to generate publication-ready protein domain diagrams here: domaindesigner.farnunglab.com
September 29, 2025 at 8:36 PM
Reposted
The "Florédex" ✨, a pokémon-inspired vector collection of the greatest flower designs and their science is coming along nicely 🌷🧬

All hand-drawn, digitalised, and animated.
September 6, 2025 at 2:27 PM
Reposted
Please share! I'm looking for a postdoc. The position is to lead one of the following projects: 1) regulation of plant specialized metabolism by cell fate, or 2) foliar embryogenesis in the succulent plant Kalanchoe.

Learn more abt projects: cxli233.github.io/cxLi_lab/res...
Plant cells are totipotent, meaning individual cells have the potential to develop into a full organism, a property unique to the zygote for animals. However, in most species for most cells, plant cells are not spontaneously totipotent, since they must be treated with specific hormone combinations to unlock their totipotency. Species within the Kalanchoe genus is unique as they spontaneously develop foliar embryos that are fully realized plantlets with shoot and root from notches along the edges of leaves. We speculate that the progenitor cells that give rise to these foliar embryos are totipotent, and we are using single cell techniques to identify & characterize them. In addition to being a fundamental process for plant biology, we foresee unlocking totipotency has many biotechnological applications, such as faciliating genetic transformation and the development of synthetic organs of biomanufacturing.
cxli233.github.io
September 4, 2025 at 2:00 PM
Reposted
"Large-scale single-cell profiling of stem cells identifies redundant regulators of shoot development and yield trait variation"

From: www.cell.com/developmenta...

#PlantScience
Large-scale single-cell profiling of stem cells identifies redundant regulators of shoot development and yield trait variation
Xu et al. performed large-scale single-cell RNA-seq of maize and Arabidopsis shoot stem cells, identifying conserved regulators and candidate stem cell genes through mutant analysis. They linked stem ...
www.cell.com
August 29, 2025 at 10:11 PM
Reposted
Our #research on #drought #recovery, now published with @springernature.com in @natcomms.nature.com:
Drought recovery in plants triggers a cell-state-specific immune activation.
doi.org/10.1038/s414...

Read thread below 👇
Drought recovery in plants triggers a cell-state-specific immune activation - Nature Communications
Post-drought rehydration triggers a preventive immune response in plants, revealing targets to enhance crop resilience by linking drought stress recovery with improved pathogen resistance.
doi.org
August 31, 2025 at 2:17 AM
Reposted
Friday Flower 001: Mimulus lewisii 🌸✨

Monkeyflowers are masterpieces of design with nectar-guide spots formed by an activator–inhibitor system of MYB transcription factors. These generate reaction–diffusion patterns across the ventral petal.
August 22, 2025 at 3:51 PM
Reposted
A truly enabling new approach by @taralowensohn.bsky.social Will Cody and @sattelylab.bsky.social to probe plant genetics at scale.

Single-gene-per-cell delivery coupled to an effective transcriptional selection system

www.biorxiv.org/content/10.1...
August 7, 2025 at 8:51 PM
Reposted
Here, the authors @oconnorlab.bsky.social @mpi-ce.bsky.social uncover the mechanism of epimerization behind uncommon 3R-containing alkaloids in Mitragyna speciosa (Kratom) and study their inclusion in downstream biosynthesis #PlantScience #natprod

www.nature.com/articles/s41...
Enzymatic epimerization of monoterpene indole alkaloids in kratom - Nature Chemical Biology
Monoterpene indole alkaloids are formed via a 3S stereoselective condensation between secologanin and tryptamine. Here the authors uncover the mechanism of epimerization behind uncommon 3R-containing ...
www.nature.com
July 16, 2025 at 7:19 PM
Reposted
Happy to share that I’ve been awarded a grant from
@osventuresllc.bsky.social to develop a genetic toolkit for flower design! Here was my 1-minute pitch.

More details of what I'm building coming soon 🌹✨
July 15, 2025 at 9:38 AM
Reposted
Extremely happy to see our withanolide biosynthesis paper out in @natcomms.nature.comrdcu.be/evHOF
Fantastic team effort with the Pucker group @bpucker.bsky.social@puckerlab.bsky.social‬ at @unibonn.bsky.social and Heretsch, Herde and Witte groups at @unihannover.bsky.social. Funded by @dfg.de
Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis
Nature Communications - Withanolides are plant steroids with potent bioactivities found in many medicinal plants including Withania somnifera, but their biosynthetic pathway is largely unknown....
rdcu.be
July 10, 2025 at 5:50 PM
Reposted
Lead author @matildeflorean.bsky.social‬ et al. from the @oconnorlab.bsky.social discover a "fake" enzyme in plants that enables the formation of free indole, a key molecule for defense & attracting pollinators.
www.ice.mpg.de/496511/PR_Fl...
June 26, 2025 at 12:54 PM
Reposted
Next preprint out from my work @oconnorlab.bsky.social @mpi-ce.bsky.social : the discovery or iridoid cyclase in asterids!
Thread below.
#PlantScience
#natprod

www.biorxiv.org/content/10.1...
www.biorxiv.org
June 18, 2025 at 1:28 PM
Reposted
Today in Nature we report a systematic strategy to activate & identify gene sets in plants. We identify 8 new genes from the yew tree's Taxol biosynthetic pathway, enabling us to engineer tobacco with 17- & 20-gene pathways to Taxol precursors baccatin III & deBz-deoxy-Taxol #SingleCell #secmet 🧬🧪🌾
Discovery of FoTO1 and Taxol genes enables biosynthesis of baccatin III - Nature
An approach that combines single-nucleus RNA sequencing and multiplexed perturbation identifies genes that enable the biosynthesis of direct precursors of the anti-cancer drug Taxol, whose curren...
www.nature.com
June 11, 2025 at 7:50 PM
Reposted
Finally online and open access!
This revised version has a slightly different title and contains a number of additional supplementary figures, mainly in vitro enzyme assays. Kept me quite busy in the lab at the end of last year!
#PlantScience
#natprod
www.nature.com/articles/s41...
Ipecac alkaloid biosynthesis in two evolutionarily distant plants - Nature Chemical Biology
Ipecac alkaloids are plant-derived compounds historically used to induce vomiting. Here the authors elucidate how two evolutionary distant plant species have evolved to produce the same ipecac alkaloi...
www.nature.com
June 3, 2025 at 3:41 PM
Reposted
New preprint! We used single cell sequencing & metabolomics to look at cell type specificity of specialized metabolism in Camptotheca, the source of chemotherapeutic agent camptothecin, as well as comparative analyses w/ Catharanthus, which we previously worked on. 🧵

www.biorxiv.org/content/10.1...
April 24, 2025 at 5:00 PM
Reposted
Our data imply that the same clades of TFs have been co-opted to regulate cell type specific biosynthesis across species. Thus, 1) cross-species analyses increase the power for finding new metabolic regulators; 2) TFs are evolutionarily older than their target biosynthetic genes. 3/n
April 24, 2025 at 5:00 PM
Reposted
This is my 1st paper as last author & (co-)corresponding author. It's a pleasure to mentor the 1st author @vanhungbui.bsky.social at U. British Columbia, Okanagan on single cell analysis. This study was supported by an NSF-EAGER project awarded to me (coPI) + Robin Buell at University of Georgia.
April 24, 2025 at 5:00 PM
Reposted
New manuscript has been written. An international collaboration between US, Germany, and Canada. And a long Acknowledgement section, since each lab has its own funding, services, and colleagues to acknowledge.
March 31, 2025 at 2:54 AM